Query psy516
Match_columns 80
No_of_seqs 94 out of 96
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:53:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_I STA, cytochrome C oxida 100.0 6.2E-47 2.1E-51 240.7 8.8 73 7-79 1-73 (73)
2 2knc_B Integrin beta-3; transm 68.3 11 0.00037 23.1 4.7 27 32-58 23-49 (79)
3 2qkl_B SPAC19A8.12 protein, SP 59.6 2 6.9E-05 27.5 0.1 24 53-80 45-74 (95)
4 2rdd_B UPF0092 membrane protei 47.8 29 0.00099 18.1 3.9 18 39-56 14-31 (37)
5 1xi4_J LCA, clathrin light cha 46.7 6.4 0.00022 24.0 0.9 17 49-65 40-56 (70)
6 2knc_A Integrin alpha-IIB; tra 39.0 28 0.00096 20.2 2.8 20 28-47 21-40 (54)
7 2l8s_A Integrin alpha-1; trans 38.0 26 0.00088 20.5 2.5 23 28-51 18-40 (54)
8 2ks1_B Epidermal growth factor 34.2 38 0.0013 18.8 2.7 21 27-47 17-37 (44)
9 2l2t_A Receptor tyrosine-prote 27.5 54 0.0018 18.2 2.6 22 26-47 15-36 (44)
10 2dt7_A Splicing factor 3A subu 27.0 22 0.00075 19.1 0.9 17 52-68 11-27 (38)
11 1jb0_M Photosystem 1 reaction 25.8 64 0.0022 16.8 2.6 14 26-39 7-20 (31)
12 4h41_A Putative alpha-L-fucosi 23.4 35 0.0012 25.7 1.8 16 59-74 50-68 (340)
13 3pcv_A Leukotriene C4 synthase 23.4 68 0.0023 21.5 3.1 29 42-72 23-52 (156)
14 1m0f_B GPB, scaffolding protei 23.2 24 0.00082 21.5 0.6 18 53-75 51-68 (68)
15 1xd7_A YWNA; structural genomi 22.5 43 0.0015 21.3 1.8 17 63-79 41-57 (145)
16 1x3a_A Synapse associated prot 22.3 19 0.00063 22.9 0.0 16 45-60 65-80 (100)
17 1hgv_A PH75 inovirus major coa 22.1 93 0.0032 17.4 2.9 19 27-45 23-41 (46)
18 3arc_I Photosystem II reaction 21.2 1.1E+02 0.0039 16.6 3.5 24 28-51 8-31 (38)
19 2k1a_A Integrin alpha-IIB; sin 20.5 38 0.0013 18.6 1.0 20 28-47 19-38 (42)
No 1
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=100.00 E-value=6.2e-47 Score=240.74 Aligned_cols=73 Identities=37% Similarity=0.701 Sum_probs=71.0
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHhcCcccccc
Q psy516 7 TGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERMKKAGLFEEYT 79 (80)
Q Consensus 7 ~~~l~KPqmRgLl~~~lr~~i~~a~~lsl~~~~~~kf~v~~PRKkaYadFYknYD~~k~Fe~Mk~aG~fqS~~ 79 (80)
++.|+||||||||++|+|+||++|+++|+|++++|||++++|||++|+||||||||||||||||++|+||||+
T Consensus 1 ~~~lakPqmrgLl~~~lr~~i~~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~ferMk~aG~fqS~~ 73 (73)
T 1v54_I 1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK 73 (73)
T ss_dssp CCCCCCCCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSSCC
T ss_pred CCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHccccccCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999996
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.34 E-value=11 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHh
Q psy516 32 VIAFGTAVAWKVLIMDPHKKAISEFYK 58 (80)
Q Consensus 32 ~lsl~~~~~~kf~v~~PRKkaYadFYk 58 (80)
++.+++-.+||+++.--.|+-|+.|=+
T Consensus 23 liGllllliwk~~~~i~DrrE~~kFEk 49 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKFEE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788999999989999998853
No 3
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=59.61 E-value=2 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHHHhcCCc------hHHHHHHHhcCccccccC
Q psy516 53 ISEFYKTYDG------EKDFERMKKAGLFEEYTL 80 (80)
Q Consensus 53 YadFYknYD~------~k~Fe~Mk~aG~fqS~~~ 80 (80)
|.|||+.-|+ +++|-++ +||+||+
T Consensus 45 Y~Df~~~~np~Lp~~~lk~F~~~----if~~cp~ 74 (95)
T 2qkl_B 45 YEDFIRAQNDQLPSLGLRVFSAK----LFAHCPL 74 (95)
T ss_dssp HHHTTTTTCTTSCCCCHHHHHHH----HHHHCTH
T ss_pred hcccccccCCCCCCCcHHHHHHH----HHHhCHH
Confidence 8999997764 6778755 7888873
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=47.82 E-value=29 Score=18.10 Aligned_cols=18 Identities=22% Similarity=0.515 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhhHHHHHH
Q psy516 39 VAWKVLIMDPHKKAISEF 56 (80)
Q Consensus 39 ~~~kf~v~~PRKkaYadF 56 (80)
+.++|+.-.|.+|+-.+.
T Consensus 14 ~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 14 LIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 456788889988886653
No 5
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=46.66 E-value=6.4 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.1
Q ss_pred hhHHHHHHHhcCCchHH
Q psy516 49 HKKAISEFYKTYDGEKD 65 (80)
Q Consensus 49 RKkaYadFYknYD~~k~ 65 (80)
=++...|||.||+-.++
T Consensus 40 A~k~iddfY~~yn~k~e 56 (70)
T 1xi4_J 40 AIKELDEWYARQDEQLQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678999999987654
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.02 E-value=28 Score=20.19 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy516 28 VQGAVIAFGTAVAWKVLIMD 47 (80)
Q Consensus 28 ~~a~~lsl~~~~~~kf~v~~ 47 (80)
.+-+++++++.++||.+...
T Consensus 21 ~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 44455688999999999775
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=37.97 E-value=26 Score=20.46 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q psy516 28 VQGAVIAFGTAVAWKVLIMDPHKK 51 (80)
Q Consensus 28 ~~a~~lsl~~~~~~kf~v~~PRKk 51 (80)
.+-+.+++++.++||.+... ||+
T Consensus 18 ~GLLLL~Lii~~LwK~GFFK-R~~ 40 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFFK-RPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCC
T ss_pred HHHHHHHHHHHHHHHcCccc-CCC
Confidence 34455688999999999775 443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.23 E-value=38 Score=18.76 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy516 27 LVQGAVIAFGTAVAWKVLIMD 47 (80)
Q Consensus 27 i~~a~~lsl~~~~~~kf~v~~ 47 (80)
+++++++-++.++++.|++..
T Consensus 17 VVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 444444444444555455444
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.47 E-value=54 Score=18.20 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy516 26 ALVQGAVIAFGTAVAWKVLIMD 47 (80)
Q Consensus 26 ~i~~a~~lsl~~~~~~kf~v~~ 47 (80)
.+++++++-++.+..+.|++..
T Consensus 15 gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 15 GVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444554444443
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.97 E-value=22 Score=19.08 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.1
Q ss_pred HHHHHHhcCCchHHHHH
Q psy516 52 AISEFYKTYDGEKDFER 68 (80)
Q Consensus 52 aYadFYknYD~~k~Fe~ 68 (80)
...+||+.....|||.+
T Consensus 11 ~f~~FY~rlk~Ike~Hr 27 (38)
T 2dt7_A 11 EFAEFYNRLKQIKEFHR 27 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778887777777764
No 11
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=25.80 E-value=64 Score=16.78 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q psy516 26 ALVQGAVIAFGTAV 39 (80)
Q Consensus 26 ~i~~a~~lsl~~~~ 39 (80)
+|.+|++++++.++
T Consensus 7 Qi~iAL~~Al~~~i 20 (31)
T 1jb0_M 7 QVYVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777776654
No 12
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=23.44 E-value=35 Score=25.74 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=13.8
Q ss_pred cCCchHH---HHHHHhcCc
Q psy516 59 TYDGEKD---FERMKKAGL 74 (80)
Q Consensus 59 nYD~~k~---Fe~Mk~aG~ 74 (80)
|+|+.+. |..||++|+
T Consensus 50 nWd~~eW~~~~~~mK~~Gi 68 (340)
T 4h41_A 50 NWGEKEWDLDFQHMKRIGI 68 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 7888877 999999995
No 13
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=23.43 E-value=68 Score=21.45 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=16.6
Q ss_pred HHHHhhhhhHHHHHHH-hcCCchHHHHHHHhc
Q psy516 42 KVLIMDPHKKAISEFY-KTYDGEKDFERMKKA 72 (80)
Q Consensus 42 kf~v~~PRKkaYadFY-knYD~~k~Fe~Mk~a 72 (80)
-+.|..-| ++|.-.| ..++ ..+|||-.++
T Consensus 23 s~~V~~~R-~k~~V~~P~~~g-~~~f~Ra~RA 52 (156)
T 3pcv_A 23 SLQVISAR-RAFRVSPPLTTG-PPEFERVYRA 52 (156)
T ss_dssp HHHHHHHH-HHTTCCTTCCCC-SHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCCCCCCC-CHHHHHHHHH
Confidence 34445555 4555555 4444 4789987754
No 14
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=23.20 E-value=24 Score=21.55 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=11.7
Q ss_pred HHHHHhcCCchHHHHHHHhcCcc
Q psy516 53 ISEFYKTYDGEKDFERMKKAGLF 75 (80)
Q Consensus 53 YadFYknYD~~k~Fe~Mk~aG~f 75 (80)
-+||||=.|. +.++-|+|
T Consensus 51 ~aEFYRFnD~-----~~~k~GYF 68 (68)
T 1m0f_B 51 PAEFYRFHDA-----EVNTFGYF 68 (68)
T ss_pred hhHheeecch-----hhhhcccC
Confidence 4677777775 36666665
No 15
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=22.45 E-value=43 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.2
Q ss_pred hHHHHHHHhcCcccccc
Q psy516 63 EKDFERMKKAGLFEEYT 79 (80)
Q Consensus 63 ~k~Fe~Mk~aG~fqS~~ 79 (80)
.|-+..++++|+.+|++
T Consensus 41 ~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 41 RRMISLLKKADILTSRA 57 (145)
T ss_dssp HHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHCCceEeec
Confidence 46678999999999975
No 16
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=22.32 E-value=19 Score=22.87 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.9
Q ss_pred HhhhhhHHHHHHHhcC
Q psy516 45 IMDPHKKAISEFYKTY 60 (80)
Q Consensus 45 v~~PRKkaYadFYknY 60 (80)
-.-|++-.+++|.+||
T Consensus 65 ~LVP~~v~e~~FW~rY 80 (100)
T 1x3a_A 65 ALVPKLVKEEVFWRNY 80 (100)
T ss_dssp HTTTTTSCHHHHHHHH
T ss_pred HHCCCCcCHHHHHHHH
Confidence 4459999999999998
No 17
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=22.07 E-value=93 Score=17.44 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy516 27 LVQGAVIAFGTAVAWKVLI 45 (80)
Q Consensus 27 i~~a~~lsl~~~~~~kf~v 45 (80)
-++.+++++|..++|++..
T Consensus 23 gvgvlal~iglsaaw~ya~ 41 (46)
T 1hgv_A 23 GVGVLALAIGLSAAWKYAK 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhHHHHHHHHH
Confidence 3566777888888998754
No 18
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=21.25 E-value=1.1e+02 Score=16.64 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q psy516 28 VQGAVIAFGTAVAWKVLIMDPHKK 51 (80)
Q Consensus 28 ~~a~~lsl~~~~~~kf~v~~PRKk 51 (80)
+-..++.+++-+.|-|+-+||-++
T Consensus 8 Vy~vV~ffvsLFiFGfLsnDP~RN 31 (38)
T 3arc_I 8 VYIVVTFFVLLFVFGFLSGDPARN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGCS
T ss_pred ehhHHHHHHHHHHccccCCCCCCC
Confidence 444455555567788889999764
No 19
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.46 E-value=38 Score=18.62 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy516 28 VQGAVIAFGTAVAWKVLIMD 47 (80)
Q Consensus 28 ~~a~~lsl~~~~~~kf~v~~ 47 (80)
.+-+.+++++.++||.+...
T Consensus 19 ~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 19 GGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 44455688889999988664
Done!