RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy516
(80 letters)
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit
VIc {Cow (Bos taurus) [TaxId: 9913]}
Length = 73
Score = 89.4 bits (222), Expect = 4e-26
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 7 TGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDF 66
+ L KPQ+R LL ++ +V +++ G A +K + + KKA ++FY+ YD KDF
Sbjct: 1 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDF 60
Query: 67 ERMKKAGLFE 76
E M+KAG+F+
Sbjct: 61 EEMRKAGIFQ 70
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 28.5 bits (63), Expect = 0.072
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 41 WKVLIMDPH-KKAISEFYKTYD 61
WKVLI+D IS + D
Sbjct: 44 WKVLILDIKSTATISSVLRVND 65
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 28.1 bits (62), Expect = 0.10
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 19 LQSSIKVALVQGAVIAFGTAVAWKVLIMDPH-KKAISEFYKTYD 61
L++++ ++ V+A WKVLI+D + +S K ++
Sbjct: 2 LKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHE 45
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
[TaxId: 1515]}
Length = 340
Score = 27.6 bits (60), Expect = 0.13
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 EFYKTYDGEKDFERMKKAGL 74
E + T+ EKD E + +AG
Sbjct: 23 EHFDTFITEKDIETIAEAGF 42
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 408
Score = 27.5 bits (60), Expect = 0.13
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 50 KKAISEFYKTYDGEKDFERMKKAGL 74
K + + T+ E+DF + G
Sbjct: 63 KSRLQSHWSTFYQEQDFANIASQGF 87
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 27.3 bits (59), Expect = 0.17
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 44 LIMDPHKKAISEFYKTYDGEKDFERMKKAGLFEEY 78
++D YD + ER++ GL EE
Sbjct: 207 ALVDVDTLKPKFIEVEYDKKIIEERIRAEGLPEEI 241
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 589
Score = 26.9 bits (59), Expect = 0.22
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 41 WKVLIMDPH-KKAISEFYKTYD 61
WKVL++D + +S K D
Sbjct: 25 WKVLVVDQLSMRMLSSCCKMTD 46
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 394
Score = 26.8 bits (58), Expect = 0.23
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 47 DPHKKAISEFYKTYDGEKDFERMKKAGL 74
+ + + + + T+ E+DF+++ GL
Sbjct: 55 EAALRILQKHWSTWITEQDFKQISNLGL 82
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 294
Score = 25.1 bits (54), Expect = 1.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 43 VLIMDPHKKAISEFYKTYDGEKDFER 68
V + +A SE Y D ++ F R
Sbjct: 251 VFGSNSILRAYSELYAQDDNKEKFVR 276
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 308
Score = 24.7 bits (53), Expect = 1.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 43 VLIMDPHKKAISEFYKTYDGEKDFER 68
+ + +AISE Y + D EK
Sbjct: 265 IFGSNDRLRAISEVYGSADAEKKLVH 290
>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein
reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}
Length = 241
Score = 24.3 bits (52), Expect = 2.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISEFYKTYDGE 63
K LV GA G A ++ +D ++ ++E + E
Sbjct: 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAE 52
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 23.5 bits (51), Expect = 2.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGT 37
LP +++++ I+V + G
Sbjct: 5 LPNQMVKSMVGKIIRVEMKGEENQLVGK 32
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 308
Score = 23.9 bits (51), Expect = 2.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 43 VLIMDPHKKAISEFYKTYDGEKDFER 68
V +A++E Y + D ++ F R
Sbjct: 265 VFGSHSQLRALAEVYGSADAQEKFVR 290
>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 362
Score = 24.0 bits (52), Expect = 2.8
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 43 VLIMDPHKKAISEFYKTYDGE 63
LI P + I Y+ D
Sbjct: 190 ALIGTPARYVIRRVYRNEDNL 210
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 292
Score = 23.6 bits (50), Expect = 3.8
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 43 VLIMDPHKKAISEFYKTYDGEKDFER 68
V + +A++E Y + D + F +
Sbjct: 249 VFGSNSVLRAVAEVYASSDAHEKFVK 274
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 23.1 bits (50), Expect = 3.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 8 GKLPKPQLRNLLQSSIKVALVQGAVIAFG 36
G + +L LL SI++ G V +FG
Sbjct: 18 GFCDQRRLGLLLHDSIQIPRQLGEVASFG 46
>d1bdba_ c.2.1.2 (A:)
Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
{Pseudomonas sp., lb400 [TaxId: 306]}
Length = 276
Score = 23.1 bits (49), Expect = 5.3
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISEFYKTYDGE 63
+ L+ G G A+ KV ++D + ++E +
Sbjct: 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDN 52
>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family
member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 22.7 bits (48), Expect = 5.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISEFYK 58
KV ++ A G A A KV+ D ++ + E K
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48
>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein
reductase {Streptomyces coelicolor [TaxId: 1902]}
Length = 257
Score = 22.8 bits (48), Expect = 6.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
+VALV GA G +A +V + ++ +
Sbjct: 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT 41
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 241
Score = 22.8 bits (48), Expect = 6.1
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISEFYKTYD 61
+ ALV G G A A ++V+++D ++ Y D
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGD 46
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 22.6 bits (48), Expect = 6.7
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
KVA++ G+ G A A KV I H + + E
Sbjct: 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEE 44
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 22.8 bits (48), Expect = 7.2
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
ALV G G A+ +V ++K + E
Sbjct: 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE 45
>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 22.5 bits (47), Expect = 7.2
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISEFYKTYDGEKDFERM 69
VA++ G G A A +++D K F
Sbjct: 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPA 58
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 22.8 bits (48), Expect = 7.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
KV LV GA G A A + ++D +++A+ +
Sbjct: 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEK 44
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 22.7 bits (48), Expect = 7.5
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
ALV G G + V ++K +++
Sbjct: 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND 47
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 22.3 bits (47), Expect = 9.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
K A++ GA G +A V++ D + A +
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH 50
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 255
Score = 22.5 bits (47), Expect = 9.5
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 24 KVALVQGAVIAFGTAVA-------WKVLIMDPHKKAISE 55
KVALV GA G A+A + V I D +
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,205
Number of extensions: 11428
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 41
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)