BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5160
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 143/180 (79%), Gaps = 4/180 (2%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI+++ K+ARF+RFCDAF IP++T IDVPGFLPG +QE+ G+I+HG+KLLYAY E+T
Sbjct: 352 GCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEAT 411
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE----KDK 143
VP +TVITRKAYGGAY VMS K+LR+D NYAWPTAE+AVMG+KGA I++R + +
Sbjct: 412 VPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKI 471
Query: 144 SNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203
+ + +Y ++F +P A+++G++D++I+PR+TR R+A+ L NK P+KKH NIPL
Sbjct: 472 AQHTADYEERFANPFVASERGFVDEVIQPRSTRKRVARAFASLRNKSVQMPWKKHDNIPL 531
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 138/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAYAVM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYAVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYLVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYIVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 346 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+
Sbjct: 406 VPLITVITRKAFGGAYNVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 465
Query: 140 -EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
E ++ EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 466 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 525
Query: 199 GNIPL 203
GNIPL
Sbjct: 526 GNIPL 530
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 216 bits (551), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 144/198 (72%), Gaps = 9/198 (4%)
Query: 15 NLIQILKLNPKA-PGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGII 73
N++ I+ NP+ G IDI+AA K+ARFIRFCDAFNIP+++ +D PG++PG QE+ GII
Sbjct: 325 NVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGII 384
Query: 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAV 133
RHG+K+LYA+AE+TVPKITVI RK+YGGA+ MS K+L +D+ YAWPTAEIAV G +GAV
Sbjct: 385 RHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAV 444
Query: 134 AILYRKE-KDKSNYE-------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185
ILYRKE + SN + EY F +P AA+KG +DD+IEP+ TR I L+
Sbjct: 445 RILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEM 504
Query: 186 LLNKKQDNPYKKHGNIPL 203
L K++ KKHGNIPL
Sbjct: 505 LKTKREYRYPKKHGNIPL 522
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 216 bits (550), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 129/188 (68%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+ARF+R CD FNIPIV +DVPGFLPG QE+ GIIR G+KLLYAY E+T
Sbjct: 361 GCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEAT 420
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE------- 140
VPKITVITRKAYGGAY VM K++ DVN AWPTA+IAVMG+ GAV +YR++
Sbjct: 421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAAN 480
Query: 141 -----KDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
K + + EY D +P AA++GY+D +I P TR I L+ L K P
Sbjct: 481 GEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPP 540
Query: 196 KKHGNIPL 203
KKHGN+PL
Sbjct: 541 KKHGNVPL 548
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 216 bits (549), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 132/183 (72%), Gaps = 8/183 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+A F+ FCD+FNIP+V +DVPGFLPG+ QE+ GIIRHG+K+LYAY+E+T
Sbjct: 340 GCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEAT 399
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE------K 141
VPKITV+ RKAYGG+Y M ++L +D YAWP+AEIAVMG++GA +++RKE
Sbjct: 400 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDP 459
Query: 142 DKSNYE--VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHG 199
D E EY + F +P AA +G +DD+I+P TR +IA L+ K+Q P KKHG
Sbjct: 460 DAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHG 519
Query: 200 NIP 202
N P
Sbjct: 520 NFP 522
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/188 (55%), Positives = 128/188 (68%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+ARF+R CD FNIPIV +DVPGFLPG QE+ GIIR G+KLLYAY E+T
Sbjct: 361 GCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEAT 420
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE------- 140
VPKITVITRKAYGGAY VM K++ DVN AWPTA+IAVMG+ GAV +YR++
Sbjct: 421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAAN 480
Query: 141 -----KDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
K + + EY D +P AA++GY+ +I P TR I L+ L K P
Sbjct: 481 GEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLLERKIAQLPP 540
Query: 196 KKHGNIPL 203
KKHGN+PL
Sbjct: 541 KKHGNVPL 548
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 133/184 (72%), Gaps = 8/184 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G +DI+++ K+ARFIRF DAFNIPI+TF+D PG+LPG+AQEH GIIRHG+KLLYAY+E+T
Sbjct: 344 GVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEAT 403
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE-KDKSNY 146
VPKITVI RKAYGGAY K+L +D AWP+AEIAV G +GA I++++E + SN
Sbjct: 404 VPKITVILRKAYGGAYIAXGSKHLGADXVLAWPSAEIAVXGPEGAANIIFKREIEASSNP 463
Query: 147 E-------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHG 199
E EY +F +P AA +GY+D +I+PR TR I + L+ K + P KKHG
Sbjct: 464 EETRRKLIEEYKQQFANPYIAASRGYVDXVIDPRETRKYIXRALEVCETKVEYRPKKKHG 523
Query: 200 NIPL 203
NIPL
Sbjct: 524 NIPL 527
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + AA K A FI IP++ ++ GF+ G E GI +HG+KL+ A A +
Sbjct: 366 GILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACAR 425
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKS--- 144
VPK TV+ ++G M + + WP A I VMG + A +L + +++++
Sbjct: 426 VPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAERA 485
Query: 145 --NYEVEYNDKFRSPVA-----------AAKKGYIDDIIEPRTTR 176
VE K ++P+ ++ + + D +I+P TR
Sbjct: 486 GQQLGVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVIDPAQTR 530
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 23/144 (15%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R ++ + F +PI+TFID PG PG+ E G ++ L + VP + TVI
Sbjct: 162 KALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIG 221
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
GGA A+ + VN + +V+ +G +IL+ K DK
Sbjct: 222 EGGSGGALAI----GVGDKVNM-LQYSTYSVISPEGCASILW-KSADK------------ 263
Query: 156 SPVAAAKKGYIDDIIEPRTTRMRI 179
+P+AA G II PR +++
Sbjct: 264 APLAAEAMG----IIRPRLKELKL 283
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
pdb|1PIX|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
Length = 587
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 25 KAPGCIDINAA------VKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSK 78
KA G + I VK F+ C +PIV D G G E ++ G
Sbjct: 376 KAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQS 435
Query: 79 LLYAYAESTVPKITVITRKAYGGAYAVMS--EKNLRSDVNYAWPTAEIAVMGSKGAVAIL 136
L+Y+ S +P+ + RK A+ V+ + N + + EIAVM + A +
Sbjct: 436 LIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAM 495
Query: 137 YRKEK--------------DKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTR 176
Y + DK N ++ P A+ G +D+I++ R
Sbjct: 496 YSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIR 549
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 18/158 (11%)
Query: 36 VKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVIT 95
+K F+ C IP++ D G G E ++ G L+Y+ S +P + +
Sbjct: 395 IKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITI 454
Query: 96 RKAYGGAYAVMS--EKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVE---- 149
RKA A+ V+ + N + + E VM + A +Y ++ K+ E
Sbjct: 455 RKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQP 514
Query: 150 -----------YNDKFRSPVAAAKKGYIDDIIEPRTTR 176
Y DK R P +KG +D+I++ R
Sbjct: 515 IIGKMNDMIQMYTDKSR-PKYCTEKGMVDEIVDMTEVR 551
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVI 94
K+ R ++ + FN PI TFID G PG A E G + L A VP I ++
Sbjct: 148 KALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIV 205
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 304
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 16/164 (9%)
Query: 34 AAVKSARFIRFCDAF---NIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPK 90
+V ARF+R + N P++ F G A L + S L E +P
Sbjct: 135 GSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPY 194
Query: 91 ITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEY 150
I+V+T GG A + + D+N A P A I G + ++ + ++K
Sbjct: 195 ISVLTDPTMGGVSASFA---MLGDLNIAEPKALIGFAGPR----VIEQTVREK------L 241
Query: 151 NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNP 194
F+ +KG ID I+ R+++A L L+N NP
Sbjct: 242 PPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNP 285
>pdb|3FBQ|A Chain A, The Crystal Structure Of The Conserved Domain Protein From
Bacillus Anthracis
Length = 292
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 66 AQEHLG---IIRHGSKLLYAYAESTVPKITVITRKAY-GGAYAVMSEKNLRSDVNYAWPT 121
+++ LG II G ++ A+ S K+T +T K Y G + N + VN+ W
Sbjct: 62 SEQDLGDDPIILGGLDIMDAHGSSGSGKMTKVTEKKYVGMVTTTHHDSNKKDKVNFRWNI 121
Query: 122 AEIAVMGSKGAV 133
I + K ++
Sbjct: 122 EGIEIPDRKKSI 133
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 16/74 (21%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF----LPGLAQEHLGIIRHGSKL---- 79
G ++++A K +R NIP D PG +PG A E+ ++ HGSK
Sbjct: 347 GSVNMSAFAKRKIILRI----NIPK----DSPGAYLSAIPGYAGEYAVLLNHGSKFKINK 398
Query: 80 LYAYAESTVPKITV 93
+ +Y + TV K+ +
Sbjct: 399 VDSYKDGTVTKLIL 412
>pdb|3S46|A Chain A, The Crystal Structure Of Alanine Racemase From
Streptococcus Pneumoniae
pdb|3S46|B Chain B, The Crystal Structure Of Alanine Racemase From
Streptococcus Pneumoniae
Length = 367
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 63 PGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYG-GAYAVMSEKNLRSDVN 116
P A HLG IR + + A+ K+ V+ AYG GA AV K ++ DV+
Sbjct: 8 PTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVXANAYGHGAVAV--AKAIQDDVD 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,873,500
Number of Sequences: 62578
Number of extensions: 229618
Number of successful extensions: 511
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 31
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)