BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5160
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus
GN=Pccb PE=1 SV=2
Length = 541
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 146/178 (82%)
Query: 26 APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAE 85
A GC+DIN++VK ARF+RFCDAFNIP++TF+DVPGFLPG AQE+ GIIRHG+KLLYA+AE
Sbjct: 364 ASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAE 423
Query: 86 STVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN 145
+TVPKITVITRKAYGGAY VMS K+L D NYAWPTAEIAVMG+KGAV I+++ +D
Sbjct: 424 ATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVEA 483
Query: 146 YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203
+ EY +KF +P AA +G++DDII+P +TR RI DL+ L +KK P++KH NIPL
Sbjct: 484 AQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANIPL 541
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens
GN=PCCB PE=1 SV=3
Length = 539
Score = 257 bits (657), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 150/188 (79%), Gaps = 1/188 (0%)
Query: 17 IQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ I+ PK A GC+DIN++VK ARF+RFCDAFNIP++TF+DVPGFLPG AQE+ GIIRH
Sbjct: 352 VGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRH 411
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLLYA+AE+TVPK+TVITRKAYGGAY VMS K+L D NYAWPTAEIAVMG+KGAV I
Sbjct: 412 GAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI 471
Query: 136 LYRKEKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
+++ ++ + EY +KF +P AA +G++DDII+P +TR RI DL L +KK P+
Sbjct: 472 IFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPW 531
Query: 196 KKHGNIPL 203
+KH NIPL
Sbjct: 532 RKHANIPL 539
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa
GN=PCCB PE=2 SV=1
Length = 539
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 150/188 (79%), Gaps = 1/188 (0%)
Query: 17 IQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ I+ PK A GC+DIN++VK ARF+RFCDAFNIP++TF+DVPGFLPG AQE+ GIIRH
Sbjct: 352 VGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRH 411
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLLYA+AE+TVPKITVITRKAYGGAY VMS K+L D NYAWPTAEIAVMG+KGAV I
Sbjct: 412 GAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI 471
Query: 136 LYRKEKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
+++ ++ + EY +KF +P AA +G++DDII+P +TR RI DL L +KK P+
Sbjct: 472 IFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPW 531
Query: 196 KKHGNIPL 203
+KH NIPL
Sbjct: 532 RKHANIPL 539
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Pccb PE=2 SV=1
Length = 541
Score = 256 bits (655), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 146/178 (82%)
Query: 26 APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAE 85
A GC+DIN++VK ARF+RFCDAF+IP++TF+DVPGFLPG AQE+ GIIRHG+KLLYA+AE
Sbjct: 364 ASGCLDINSSVKGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAE 423
Query: 86 STVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN 145
+TVPKITVITRKAYGGAY VMS K+L D NYAWPTAEIAVMG+KGAV I+++ +D
Sbjct: 424 ATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHEDVEA 483
Query: 146 YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203
+ EY +KF +P AA +G++DDII+P +TR RI DL+ L +KK P++KH N+PL
Sbjct: 484 AQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANVPL 541
>sp|Q2TBR0|PCCB_BOVIN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus
GN=PCCB PE=2 SV=1
Length = 539
Score = 255 bits (652), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/188 (62%), Positives = 150/188 (79%), Gaps = 1/188 (0%)
Query: 17 IQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ I+ PK A GC+DIN++VK ARF+RFCD+FNIP++TF+DVPGFLPG AQE+ GIIRH
Sbjct: 352 VGIVGNQPKVASGCLDINSSVKGARFVRFCDSFNIPLITFVDVPGFLPGTAQEYGGIIRH 411
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLLYA+AE+TVPK+TVITRKAYGGAY VMS K+L D NYAWPTAEIAVMG+KGAV I
Sbjct: 412 GAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI 471
Query: 136 LYRKEKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
+++ ++ + EY +KF +P AA +G++DDII+P +TR RI DL L +KK P+
Sbjct: 472 IFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPW 531
Query: 196 KKHGNIPL 203
+KH NIPL
Sbjct: 532 RKHANIPL 539
>sp|P53003|PCCB_SACEN Propionyl-CoA carboxylase beta chain OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=pccB PE=3 SV=2
Length = 546
Score = 223 bits (568), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 137/188 (72%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G +DI+A+ K+ARF+RFCDAFNIP++T +DVPGFLPG QE GIIR G+KLLYAYAE+T
Sbjct: 359 GTLDIDASEKAARFVRFCDAFNIPVLTLVDVPGFLPGTGQEWNGIIRRGAKLLYAYAEAT 418
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-------- 139
VP +TVITRKAYGGAY VM K+L +D+N AWPTA+IAVMG++GA ILYR+
Sbjct: 419 VPLVTVITRKAYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAAER 478
Query: 140 ----EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
E ++ + EY D +P AA++GY+D +I P TR +A+ L+ L +K++ P
Sbjct: 479 GEDVEALRARLQQEYEDTLCNPYVAAERGYVDSVIPPSHTRGHVARALRMLADKREALPA 538
Query: 196 KKHGNIPL 203
KKHGNIPL
Sbjct: 539 KKHGNIPL 546
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
leprae (strain TN) GN=accD5 PE=3 SV=1
Length = 549
Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 131/188 (69%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+ARF+R CD FNIPIV +DVPGFLPG QE+ GIIR G+KLL+AY E+T
Sbjct: 362 GCLDINASEKAARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEAT 421
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE-----KD 142
VPKITVITRKAYGGAY VM KN+ DVN AWPTA+IAVMG+ GAV +YRKE K+
Sbjct: 422 VPKITVITRKAYGGAYCVMGSKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQAAKN 481
Query: 143 KSN-------YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
+N + EY D +P AA++GY+D +I P TR IA L L K P
Sbjct: 482 GANVDELRLQLQQEYEDTLVNPYIAAERGYVDAVIPPSHTRGYIATALHLLERKIAHLPP 541
Query: 196 KKHGNIPL 203
KKHGNIPL
Sbjct: 542 KKHGNIPL 549
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
tuberculosis GN=accD5 PE=1 SV=1
Length = 548
Score = 216 bits (550), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 129/188 (68%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+ARF+R CD FNIPIV +DVPGFLPG QE+ GIIR G+KLLYAY E+T
Sbjct: 361 GCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEAT 420
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE------- 140
VPKITVITRKAYGGAY VM K++ DVN AWPTA+IAVMG+ GAV +YR++
Sbjct: 421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAAN 480
Query: 141 -----KDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
K + + EY D +P AA++GY+D +I P TR I L+ L K P
Sbjct: 481 GEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPP 540
Query: 196 KKHGNIPL 203
KKHGN+PL
Sbjct: 541 KKHGNVPL 548
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis
(strain 168) GN=yqjD PE=3 SV=2
Length = 507
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 134/196 (68%), Gaps = 9/196 (4%)
Query: 17 IQILKLNPKA-PGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
I I+ PK G + I+AA K+ARFIRFCDAF+IP++T DVPGFLPG+ QEH GIIRH
Sbjct: 312 IGIVASQPKHLAGSLTIDAADKAARFIRFCDAFDIPLLTVEDVPGFLPGIQQEHNGIIRH 371
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLL+AYAE+TVPK+T+I RKAYGGAY M+ K + +D+ +AWP AEIAVMG +GA +I
Sbjct: 372 GAKLLFAYAEATVPKVTLIIRKAYGGAYVAMNSKAIGADLVFAWPNAEIAVMGPEGAASI 431
Query: 136 LYRKE--------KDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187
LY KE K K EY + P AA G +DDII P +R R+ Q L
Sbjct: 432 LYEKEIKASADPQKTKREKTAEYKKQNAGPYKAAACGMVDDIILPEESRGRLIQAFHMLT 491
Query: 188 NKKQDNPYKKHGNIPL 203
+K ++ P KKHGNIPL
Sbjct: 492 HKTEERPKKKHGNIPL 507
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit
OS=Propionibacterium freudenreichii subsp. shermanii
PE=1 SV=3
Length = 611
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 131/184 (71%), Gaps = 8/184 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+A F+ FCD+FNIP+V +DVPGFLPG+ QE+ GIIRHG+K+LYAY+E+T
Sbjct: 341 GCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEAT 400
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKE------K 141
VPKITV+ RKAYGG+Y M ++L +D YAWP+AEIAVMG++GA +++RKE
Sbjct: 401 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDP 460
Query: 142 DKSNYE--VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHG 199
D E EY + F +P AA +G +DD+I+P TR +IA L+ K+Q P KK
Sbjct: 461 DAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPW 520
Query: 200 NIPL 203
+PL
Sbjct: 521 KLPL 524
>sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
tuberculosis GN=accD6 PE=3 SV=1
Length = 473
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 120/198 (60%), Gaps = 16/198 (8%)
Query: 17 IQILKLNP-KAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ +L NP + GC++ +A K+ARF+R CDAF IP+V +DVPG+LPG+ QE G++R
Sbjct: 281 VGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRR 340
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLL+A+ E TVP++T++TRK YGGAY M+ ++L + +AWP AE+AVMG+K AV I
Sbjct: 341 GAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGI 400
Query: 136 LYRK----------EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185
L++K E E+ +A G +D+ I+P TR ++ + L
Sbjct: 401 LHKKKLAAAPEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQ 460
Query: 186 LLNKKQDNPYKKHGNIPL 203
++ +H NIPL
Sbjct: 461 APARR-----GRHKNIPL 473
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=accD6 PE=3
SV=1
Length = 473
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 120/198 (60%), Gaps = 16/198 (8%)
Query: 17 IQILKLNP-KAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ +L NP + GC++ +A K+ARF+R CDAF IP+V +DVPG+LPG+ QE G++R
Sbjct: 281 VGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRR 340
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+KLL+A+ E TVP++T++TRK YGGAY M+ ++L + +AWP AE+AVMG+K AV I
Sbjct: 341 GAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGI 400
Query: 136 LYRK----------EKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185
L++K E E+ +A G +D+ I+P TR ++ + L
Sbjct: 401 LHKKKLAAAPEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQ 460
Query: 186 LLNKKQDNPYKKHGNIPL 203
++ +H NIPL
Sbjct: 461 APARR-----GRHKNIPL 473
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis
GN=pccB PE=3 SV=1
Length = 476
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 94/123 (76%)
Query: 17 IQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHG 76
+ ++ NP GC++ +A K+ARF+R C+AF +P+V +DVPG+LPG++ E G++R G
Sbjct: 285 VGVIANNPLRLGCLNSESAEKAARFVRLCNAFGVPLVVVVDVPGYLPGVSMEWEGVVRRG 344
Query: 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAIL 136
+KLL+A+AE+TVP++TV+TRK YGGAY M+ + L + +AWP +E+AVMG+K AV IL
Sbjct: 345 AKLLHAFAEATVPRVTVVTRKIYGGAYIAMNSRALGATAVFAWPNSEVAVMGAKAAVGIL 404
Query: 137 YRK 139
+++
Sbjct: 405 HKR 407
>sp|O31825|YNGE_BACSU Uncharacterized carboxylase YngE OS=Bacillus subtilis (strain 168)
GN=yngE PE=3 SV=2
Length = 511
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 17 IQILKLNPKAPGCIDI-NAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRH 75
+ I+ PK G + ++A K+A+FI CDAF+IP++ D+PGF+ G E GIIRH
Sbjct: 315 VGIVANQPKVKGGVLFHDSADKAAKFITLCDAFHIPLLFLADIPGFMIGTKVEQAGIIRH 374
Query: 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAI 135
G+K++ A +E+TVPK++VI RKAYG M+ D A PTA+IAVMG + AV
Sbjct: 375 GAKMISAMSEATVPKLSVIVRKAYGAGLYAMAGPAFEPDCCLALPTAQIAVMGPEAAVNA 434
Query: 136 LYRK------EKDKSNYEVEYNDKFRSPV---AAAKKGYIDDIIEPRTTRMRIAQDLKFL 186
+Y K E++++ + ++++ + A + ID +I + R +A+ LK
Sbjct: 435 VYAKKIAELPEEERAAFISSKREEYKEDINIYRLASEMIIDAVIPANSLRDELAKRLKAY 494
Query: 187 LNKKQDNPYKKHGNIPL 203
+ K+ +KH P+
Sbjct: 495 MTKEMTFTNRKHPVYPV 511
>sp|Q8T2J9|MCCB_DICDI Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Dictyostelium discoideum GN=mccb PE=3 SV=2
Length = 588
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 16/182 (8%)
Query: 34 AAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITV 93
+AVK A FI C+ IP+V ++ GF+ G E GI + G+K++ A A + VPKIT+
Sbjct: 403 SAVKGAHFIELCNQRGIPLVFLQNITGFMVGKTYESKGIAKDGAKMVMAVATAKVPKITM 462
Query: 94 ITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKD---KSN--YEV 148
I ++G M ++ Y WP A+I+VMG + A ++L + +KD K N +
Sbjct: 463 IIGGSFGAGNYGMCGRSYSPRFLYMWPNAKISVMGGEQAASVLAQIQKDNMAKENKQWSP 522
Query: 149 EYNDKFRSPVA-----------AAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKK 197
E + F+ P++ ++ + + D +I+P+ +R IA L +N+ + P
Sbjct: 523 EEENTFKKPISDKFEEEGSIYYSSARCWDDGVIDPQDSRKVIALSLSACMNQPINPPSDG 582
Query: 198 HG 199
G
Sbjct: 583 FG 584
>sp|P34385|MCCB_CAEEL Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Caenorhabditis elegans GN=F02A9.4 PE=2 SV=1
Length = 608
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + +A+K + FI C IP++ ++ GF+ G E GI +HG+KL+ A A +
Sbjct: 419 GVLFAESAMKGSHFIELCCQRKIPLLFLQNITGFMVGRDAEAGGIAKHGAKLVTAVACAK 478
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VPKITV+ +YG M + + WP + I+VMG + A +L +K+K E
Sbjct: 479 VPKITVLVGGSYGAGNYGMCGRGYSPRYVFMWPNSRISVMGGEQAANVLSTVQKEKKKRE 538
Query: 148 -VEYNDK----FRSPVA-----------AAKKGYIDDIIEPRTTRMRIAQDLKFLLNK 189
++ D+ R PV A+ + + D +I+P+ TR + + L K
Sbjct: 539 GADWTDQQDLELRKPVEEKFEKEGHPYFASARLWDDGVIDPKDTRKVLGLAFQSTLQK 596
>sp|Q9V9A7|MCCB_DROME Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1
Length = 578
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + +A+K A FI+ C IP+V ++ GF+ G E GI ++G+K++ A A +
Sbjct: 389 GVLFSESALKGAHFIQLCAQRKIPLVFLQNITGFMVGRDAEANGIAKNGAKMVTAVACAN 448
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDK---- 143
VPK TVI +YG M + Y WP + I+VMG A ++ + +D+
Sbjct: 449 VPKFTVIIGGSYGAGNYGMCGRAYSPRFLYMWPNSRISVMGGTQAANVMAQITEDQRKRA 508
Query: 144 -SNYEVEYNDKFRSPVA-----------AAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188
+ E K ++P+ + + + D II+P TR + LK LN
Sbjct: 509 GKEFSEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPANTRQILGLSLKAALN 565
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1
Length = 587
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 34 AAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITV 93
+A+K A FI C IP+V ++ GF+ G E GI + G+K++ A + + VPKIT+
Sbjct: 404 SALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITI 463
Query: 94 ITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE------ 147
IT ++G M + D + WP A I +MG A +L + E+ +
Sbjct: 464 ITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTE 523
Query: 148 ----------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNK 189
V+ ++ +P + + + D +I+P TR + L LN+
Sbjct: 524 EEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNR 575
>sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus
musculus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + +A K A F++ C NIP++ ++ GF+ G E GI + G+K++ A A +
Sbjct: 374 GVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMVGRDYEAEGIAKDGAKMVAAVACAK 433
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VPKITVI +YG M + Y WP A I+VMG + A +L +D+ E
Sbjct: 434 VPKITVIIGGSYGAGNYGMCGRAYSPRFLYMWPNARISVMGGEQAATVLATVARDQKARE 493
Query: 148 ----------------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188
++ ++ +P ++ + + D II+P TR+ + L LN
Sbjct: 494 GKQFSSAEEAALKEPIIKRFEEEGNPYYSSARLWDDGIIDPVDTRLVLGLSLSAALN 550
>sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + +A K A F++ C NIP++ ++ GF+ G E GI + G+K++ A + +
Sbjct: 374 GVLFSESAKKGAHFVQLCCQRNIPLLFLQNITGFMVGKDYEAEGIAKDGAKMVAAVSCAK 433
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VPKITVI +YG M + Y WP A I+VMG + A +L +D+ E
Sbjct: 434 VPKITVIIGGSYGAGNYGMCGRAYSPRFLYMWPNARISVMGGEQAATVLATVARDQRARE 493
Query: 148 ----------------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188
++ ++ +P ++ + + D II+P TR+ + + LN
Sbjct: 494 GKQFSSAEEAALKEPIIKRFEEEGNPYYSSARLWDDGIIDPVDTRLVLGLSISAALN 550
>sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo
sapiens GN=MCCC2 PE=1 SV=1
Length = 563
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + +A K F++ C NIP++ ++ GF+ G E GI + G+K++ A A +
Sbjct: 374 GVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQ 433
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VPKIT+I +YG M + Y WP A I+VMG + A +L KD+ E
Sbjct: 434 VPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRARE 493
Query: 148 ----------------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188
++ ++ +P ++ + + D II+P TR+ + LN
Sbjct: 494 GKQFSSADEAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAALN 550
>sp|A4SX64|ACCA_POLSQ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Polynucleobacter necessarius subsp. asymbioticus
(strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=accA
PE=3 SV=1
Length = 323
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F+IP+ TF+D PG PG+ E + LY AE TVP I T+I
Sbjct: 139 KAMRLMRLAEKFSIPVFTFVDTPGAFPGIDAEERNQSEAIGRNLYVQAELTVPIIATIIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVE 149
GGA A+ DV + +V+ +G +IL+ K DK++ E
Sbjct: 199 EGGSGGALAIA-----MGDVVLMLQNSTYSVISPEGCASILW-KTADKASEAAE 246
>sp|Q7VX94|ACCA_BORPE Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589
/ NCTC 13251) GN=accA PE=3 SV=1
Length = 321
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TFID PG PG+ E G + LYA AE VP I TVI
Sbjct: 139 KALRLMRLAEKFRLPIFTFIDTPGAYPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ + N + Y A +V+ +G +IL+R
Sbjct: 199 EGGSGGALAI-AVGNAVLMLQY----ATYSVISPEGCASILWR 236
>sp|Q7W860|ACCA_BORPA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587
/ NCTC 13253) GN=accA PE=3 SV=1
Length = 321
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TFID PG PG+ E G + LYA AE VP I TVI
Sbjct: 139 KALRLMRLAEKFRLPIFTFIDTPGAYPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ + N + Y A +V+ +G +IL+R
Sbjct: 199 EGGSGGALAI-AVGNAVLMLQY----ATYSVISPEGCASILWR 236
>sp|Q7WLK8|ACCA_BORBR Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC
13252 / RB50) GN=accA PE=3 SV=1
Length = 321
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TFID PG PG+ E G + LYA AE VP I TVI
Sbjct: 139 KALRLMRLAEKFRLPIFTFIDTPGAYPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ + N + Y A +V+ +G +IL+R
Sbjct: 199 EGGSGGALAI-AVGNAVLMLQY----ATYSVISPEGCASILWR 236
>sp|Q82VP5|ACCA_NITEU Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=accA PE=3 SV=1
Length = 322
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ R +R + F+IP++TFID PG PG+ E G K LY A +P I VI
Sbjct: 139 KALRLMRLAEKFSIPLITFIDTPGAYPGIDAEERGQSEAIGKNLYVMAGLRIPIICVIIG 198
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEY----N 151
+ GGA A+ D + + +V+ +G +IL+ K DK++ E
Sbjct: 199 EGGSGGALAIAV-----GDTSLMLQYSTYSVISPEGCASILW-KSADKASDAAEILGITA 252
Query: 152 DKFRSPVAAAKKGYIDDII-EPRTTRMR--------IAQDLKFLLNKKQDNPYK 196
D+ + + G ID II EP R + Q L+ L K QD P +
Sbjct: 253 DRLK------EMGLIDSIIPEPIGGAHRDYPVVMQSVKQTLQESLRKLQDIPLE 300
>sp|Q3SL76|ACCA_THIDA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=accA PE=3 SV=1
Length = 322
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI+TFID PG PG+ E G ++ LY AE P + T++
Sbjct: 139 KALRLMRLAEKFRLPILTFIDTPGAYPGIGAEERGQSEAIARNLYVMAELQTPIVCTIVG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVE----YN 151
GGA A+ D + +V+ +G +IL+ K DK++ E
Sbjct: 199 EGGSGGALAIGV-----GDRTLILQYSTYSVISPEGCASILW-KSADKASVAAETLGITA 252
Query: 152 DKFRSPVAAAKKGYIDDIIE 171
D+ ++ G +D IIE
Sbjct: 253 DRLKA------NGLVDRIIE 266
>sp|Q2Y814|ACCA_NITMU Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=accA PE=3 SV=1
Length = 322
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F IP+ TFID PG PG+ E G LY AE VP I TVI
Sbjct: 139 KALRLMRLAEKFAIPLFTFIDTPGAYPGIGAEERGQSEAIGHNLYVMAELKVPVICTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKS 144
GGA AV D A +V+ +G +IL+ K DK+
Sbjct: 199 EGGSGGALAVAV-----GDAIQMLQYATYSVISPEGCASILW-KSADKA 241
>sp|B0BR78|ACCA_ACTPJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=accA PE=3 SV=1
Length = 317
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + D FN+PI+TFID PG PG+ E G ++ L A+ VP I TVI
Sbjct: 140 KALRLMEMADRFNMPIITFIDTPGAYPGIGAEERGQAEAIARNLREMAQLKVPVICTVIG 199
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-EKDKSNYEV 148
GGA A+ + VN + +V+ +G +IL++ EK + EV
Sbjct: 200 EGGSGGALAI----GVGDKVNM-LQYSTYSVISPEGCASILWKSAEKASTAAEV 248
>sp|B3H2H3|ACCA_ACTP7 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=accA PE=3 SV=1
Length = 317
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + D FN+PI+TFID PG PG+ E G ++ L A+ VP I TVI
Sbjct: 140 KALRLMEMADRFNMPIITFIDTPGAYPGIGAEERGQAEAIARNLREMAQLKVPVICTVIG 199
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-EKDKSNYEV 148
GGA A+ + VN + +V+ +G +IL++ EK + EV
Sbjct: 200 EGGSGGALAI----GVGDKVNM-LQYSTYSVISPEGCASILWKSAEKASTAAEV 248
>sp|A3N2D4|ACCA_ACTP2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=accA PE=3 SV=1
Length = 317
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + D FN+PI+TFID PG PG+ E G ++ L A+ VP I TVI
Sbjct: 140 KALRLMEMADRFNMPIITFIDTPGAYPGIGAEERGQAEAIARNLREMAQLKVPVICTVIG 199
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-EKDKSNYEV 148
GGA A+ + VN + +V+ +G +IL++ EK + EV
Sbjct: 200 EGGSGGALAI----GVGDKVNM-LQYSTYSVISPEGCASILWKSAEKASTAAEV 248
>sp|P43872|ACCA_HAEIN Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=accA PE=3 SV=1
Length = 315
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + + F +PI+TFID PG PG+ E G ++ L A+ TVP I TVI
Sbjct: 138 KALRLMEMAERFKLPIITFIDTPGAYPGIGAEERGQAEAIARNLREMAQLTVPVICTVIG 197
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRK-EKDKSNYEV------ 148
GGA A+ + VN + +V+ +G +IL++ EK + EV
Sbjct: 198 EGGSGGALAI----GVGDKVNM-LQYSTYSVISPEGCASILWKSAEKASTAAEVMGLTAS 252
Query: 149 ---EYN---DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186
E N + P+ A + Y+ +I E ++R+ +DL L
Sbjct: 253 RLKELNLIDSIVQEPLGGAHRSYL-EIAE--NLKLRLKEDLAEL 293
>sp|B1XUY6|ACCA_POLNS Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Polynucleobacter necessarius subsp. necessarius
(strain STIR1) GN=accA PE=3 SV=1
Length = 323
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F IP+ TF+D PG PG+ E + LY AE VP I T+I
Sbjct: 139 KAMRLMRLAEKFGIPVFTFVDTPGAFPGIDAEERNQSEAIGRNLYVQAELEVPIIATIIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVE 149
GGA A+ D + +V+ +G +IL+ K DK++ E
Sbjct: 199 EGGSGGALAIA-----MGDAVLMLQNSTYSVISPEGCASILW-KTADKASEAAE 246
>sp|Q47HT1|ACCA_DECAR Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Dechloromonas aromatica (strain RCB) GN=accA PE=3
SV=2
Length = 322
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R ++ + F IP++TF+D PG PG+ E G + LY AE VP I T+I
Sbjct: 139 KALRLMKLAEKFGIPVMTFVDTPGAYPGIDAEERGQSEAIGRNLYVMAELKVPVIVTIIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ L+ + Y + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAVGDTLQM-LQY----STYSVISPEGCASILWK 236
>sp|B6JLE0|ACCA_HELP2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Helicobacter pylori (strain P12) GN=accA PE=3 SV=1
Length = 312
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ + +F + FN+PI+ +D G PG+ E G +K L +A VP I+VI
Sbjct: 132 KALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIG 191
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ GGA A+ L + + Y+ +V+ +G AIL+ D S EV
Sbjct: 192 EGGSGGALAIAVADKL-AMMEYSI----FSVISPEGCAAILW---DDPSKTEVAIKAMKI 243
Query: 156 SPVAAAKKGYIDDII-EPRTTRMR 178
+P + G IDDII EP R
Sbjct: 244 TPRDLKEAGLIDDIILEPSKGAHR 267
>sp|B5Z6S9|ACCA_HELPG Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Helicobacter pylori (strain G27) GN=accA PE=3 SV=1
Length = 312
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ + +F + FN+PI+ +D G PG+ E G +K L +A VP I+VI
Sbjct: 132 KALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIG 191
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ GGA A+ L + + Y+ +V+ +G AIL+ D S EV
Sbjct: 192 EGGSGGALAIAVADKL-AMMEYSI----FSVISPEGCAAILW---DDPSKTEVAIKAMKI 243
Query: 156 SPVAAAKKGYIDDII-EPRTTRMR 178
+P + G IDDII EP R
Sbjct: 244 TPRDLKEAGLIDDIILEPSKGAHR 267
>sp|A9AHN8|ACCA_BURM1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|O25283|ACCA_HELPY Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=accA PE=3 SV=1
Length = 312
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ + +F + FN+PI+ +D G PG+ E G +K L +A VP I+VI
Sbjct: 132 KALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIG 191
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ GGA A+ L + + Y+ +V+ +G AIL+ D S EV
Sbjct: 192 EGGSGGALAIAVADKL-AMMEYSI----FSVISPEGCAAILW---DDPSKTEVAIKAMKI 243
Query: 156 SPVAAAKKGYIDDII-EPRTTRMR 178
+P + G IDDII EP R
Sbjct: 244 TPRDLKEAGLIDDIILEPSKGAHR 267
>sp|B2UTS1|ACCA_HELPS Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Helicobacter pylori (strain Shi470) GN=accA PE=3 SV=1
Length = 312
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ + +F + FN+PI+ +D G PG+ E G +K L +A VP I+VI
Sbjct: 132 KALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIG 191
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ GGA A+ L + + Y+ +V+ +G AIL+ D S EV
Sbjct: 192 EGGSGGALAIAVADKL-AMMEYSI----FSVISPEGCAAILW---DDPSKTEVAIKAMKI 243
Query: 156 SPVAAAKKGYIDDII-EPRTTRMR 178
+P + G IDDII EP R
Sbjct: 244 TPRDLKEAGLIDDIILEPSKGAHR 267
>sp|Q39EZ0|ACCA_BURS3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia sp. (strain 383) GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|Q1CTX0|ACCA_HELPH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Helicobacter pylori (strain HPAG1) GN=accA PE=3 SV=1
Length = 312
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ + +F + FN+PI+ +D G PG+ E G +K L +A VP I+VI
Sbjct: 132 KALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIG 191
Query: 97 K-AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ GGA A+ L + + Y+ +V+ +G AIL+ D S EV
Sbjct: 192 EGGSGGALAIAVADKL-AMMEYSI----FSVISPEGCAAILW---DDPSKTEVAIKAMKI 243
Query: 156 SPVAAAKKGYIDDII-EPRTTRMR 178
+P + G IDDII EP R
Sbjct: 244 TPRDLKEAGLIDDIILEPSKGAHR 267
>sp|B2JIR9|ACCA_BURP8 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia phymatum (strain DSM 17167 / STM815)
GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +P+ TFID PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPLFTFIDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIISTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA AV +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAVAV-----ADSVLMLQFSTYSVISPEGCASILWK 236
>sp|Q0BDV6|ACCA_BURCM Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|B4ED71|ACCA_BURCJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|A0K8K0|ACCA_BURCH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia cenocepacia (strain HI2424) GN=accA PE=3
SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|B1JUK6|ACCA_BURCC Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia cenocepacia (strain MC0-3) GN=accA PE=3
SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|Q1BHN9|ACCA_BURCA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia cenocepacia (strain AU 1054) GN=accA
PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|B1YSM6|ACCA_BURA4 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Burkholderia ambifaria (strain MC40-6) GN=accA PE=3
SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R +R + F +PI TF+D PG PG+ E G + LY AE P I TVI
Sbjct: 139 KAERLMRLAEKFGLPIFTFVDTPGAYPGIGAEERGQSEAIGRNLYVMAELKTPIITTVIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ +D + +V+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----ADTVMMLQFSTYSVISPEGCASILWK 236
>sp|Q0KCA7|ACCA_CUPNH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier 337) GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + D F +PI TF+D PG PG+ E G LY A VP I T+I
Sbjct: 139 KAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHNLYVMAGLKVPLIATIIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ DV A AV+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----GDVVQMLQFATYAVISPEGCASILWK 236
>sp|Q473D1|ACCA_CUPPJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=accA PE=3 SV=1
Length = 323
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R + D F +PI TF+D PG PG+ E G LY A VP I T+I
Sbjct: 139 KAKRLMELADKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHNLYVMAGLKVPLIATIIG 198
Query: 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR 138
GGA A+ DV A AV+ +G +IL++
Sbjct: 199 EGGSGGALAIAV-----GDVVQMLQFATYAVISPEGCASILWK 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,882,080
Number of Sequences: 539616
Number of extensions: 2908897
Number of successful extensions: 7604
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 7104
Number of HSP's gapped (non-prelim): 549
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)