Query psy5160
Match_columns 203
No_of_seqs 142 out of 1435
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:54:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4799 Acetyl-CoA carboxylase 100.0 5.8E-51 1.2E-55 370.2 18.3 194 10-203 319-526 (526)
2 TIGR01117 mmdA methylmalonyl-C 100.0 2.5E-45 5.3E-50 337.7 23.2 193 11-203 311-512 (512)
3 PF01039 Carboxyl_trans: Carbo 100.0 9.2E-46 2E-50 340.0 13.8 192 10-201 289-493 (493)
4 KOG0540|consensus 100.0 3.7E-44 8.1E-49 316.4 14.5 190 11-203 345-536 (536)
5 PLN02820 3-methylcrotonyl-CoA 100.0 1.1E-42 2.4E-47 322.4 22.4 187 10-202 366-568 (569)
6 PRK05724 acetyl-CoA carboxylas 100.0 9.3E-37 2E-41 264.5 21.2 172 11-189 104-297 (319)
7 PRK12319 acetyl-CoA carboxylas 100.0 1.2E-36 2.6E-41 258.0 21.0 172 11-189 51-240 (256)
8 TIGR00513 accA acetyl-CoA carb 100.0 2.1E-36 4.6E-41 262.0 21.7 172 11-189 104-297 (316)
9 TIGR03134 malonate_gamma malon 100.0 7.3E-36 1.6E-40 250.8 21.6 174 10-188 27-208 (238)
10 CHL00198 accA acetyl-CoA carbo 100.0 4.8E-35 1.1E-39 253.7 21.4 172 11-189 107-300 (322)
11 PLN03230 acetyl-coenzyme A car 100.0 1.9E-34 4.2E-39 255.5 21.7 172 10-188 173-366 (431)
12 PRK05654 acetyl-CoA carboxylas 100.0 5.7E-34 1.2E-38 245.7 19.9 163 11-189 117-283 (292)
13 TIGR00515 accD acetyl-CoA carb 100.0 1.3E-33 2.8E-38 242.6 19.2 163 11-189 116-282 (285)
14 PLN03229 acetyl-coenzyme A car 100.0 4.3E-33 9.4E-38 259.6 21.1 170 11-187 195-386 (762)
15 CHL00174 accD acetyl-CoA carbo 100.0 1.8E-27 3.9E-32 204.4 17.9 160 11-186 129-293 (296)
16 COG0825 AccA Acetyl-CoA carbox 100.0 6.2E-28 1.4E-32 204.3 14.7 173 10-190 102-297 (317)
17 PLN02820 3-methylcrotonyl-CoA 99.9 4.9E-25 1.1E-29 204.8 17.4 167 11-190 125-298 (569)
18 TIGR03133 malonate_beta malona 99.9 4.3E-24 9.4E-29 182.5 18.5 166 11-185 55-232 (274)
19 COG0777 AccD Acetyl-CoA carbox 99.9 2.2E-24 4.7E-29 181.5 16.2 167 11-193 118-288 (294)
20 TIGR01117 mmdA methylmalonyl-C 99.9 6.2E-24 1.3E-28 196.0 16.4 169 11-195 78-252 (512)
21 PRK07189 malonate decarboxylas 99.9 2.6E-23 5.7E-28 179.5 15.9 153 11-172 64-226 (301)
22 COG4799 Acetyl-CoA carboxylase 99.9 1.3E-23 2.7E-28 191.8 12.4 170 11-196 87-262 (526)
23 PF01039 Carboxyl_trans: Carbo 99.9 6.6E-23 1.4E-27 188.8 16.0 166 11-189 53-223 (493)
24 PF06833 MdcE: Malonate decarb 99.8 2.8E-20 6.1E-25 154.8 14.8 169 13-186 28-204 (234)
25 KOG0540|consensus 99.6 9.7E-16 2.1E-20 136.6 6.9 122 11-136 108-234 (536)
26 cd07020 Clp_protease_NfeD_1 No 99.0 4E-09 8.7E-14 85.8 12.5 131 28-173 8-166 (187)
27 KOG0368|consensus 98.9 2.2E-09 4.8E-14 106.6 5.7 173 11-184 1845-2088(2196)
28 PRK11423 methylmalonyl-CoA dec 98.8 4.5E-07 9.8E-12 77.3 17.5 174 6-186 4-198 (261)
29 PRK05674 gamma-carboxygeranoyl 98.8 5.5E-07 1.2E-11 77.0 17.6 179 1-186 1-202 (265)
30 cd07014 S49_SppA Signal peptid 98.8 3E-07 6.6E-12 73.9 14.4 138 31-179 20-176 (177)
31 PRK06144 enoyl-CoA hydratase; 98.8 1.5E-06 3.2E-11 74.2 19.2 176 5-187 7-206 (262)
32 PRK06143 enoyl-CoA hydratase; 98.8 1.7E-06 3.7E-11 73.6 19.2 175 8-188 8-203 (256)
33 TIGR02280 PaaB1 phenylacetate 98.8 1.2E-06 2.6E-11 74.4 18.2 172 9-186 2-195 (256)
34 PRK08150 enoyl-CoA hydratase; 98.8 1.8E-06 3.8E-11 73.4 19.1 173 7-186 3-194 (255)
35 PRK09076 enoyl-CoA hydratase; 98.8 1.5E-06 3.3E-11 73.9 18.6 173 7-186 4-197 (258)
36 PRK09245 enoyl-CoA hydratase; 98.7 1.4E-06 3.1E-11 74.3 17.9 174 8-187 5-206 (266)
37 cd07021 Clp_protease_NfeD_like 98.7 4.1E-07 8.8E-12 73.7 13.4 89 28-130 8-97 (178)
38 PRK06023 enoyl-CoA hydratase; 98.7 2.1E-06 4.5E-11 72.8 17.9 174 7-186 4-199 (251)
39 PRK08138 enoyl-CoA hydratase; 98.7 2.8E-06 6E-11 72.4 18.7 174 5-184 6-198 (261)
40 PRK06688 enoyl-CoA hydratase; 98.7 2.4E-06 5.1E-11 72.6 18.1 175 7-187 6-199 (259)
41 PRK08139 enoyl-CoA hydratase; 98.7 3.3E-06 7.3E-11 72.2 19.1 172 9-187 14-206 (266)
42 PRK08140 enoyl-CoA hydratase; 98.7 2.2E-06 4.7E-11 73.0 17.9 176 7-188 5-203 (262)
43 PRK06213 enoyl-CoA hydratase; 98.7 2.5E-06 5.4E-11 71.3 17.7 173 8-188 5-196 (229)
44 PRK07659 enoyl-CoA hydratase; 98.7 1.3E-06 2.7E-11 74.5 16.0 173 7-186 7-199 (260)
45 PF00378 ECH: Enoyl-CoA hydrat 98.7 9.5E-07 2.1E-11 74.3 14.9 173 11-189 3-195 (245)
46 PRK07511 enoyl-CoA hydratase; 98.7 3E-06 6.6E-11 72.0 18.1 172 8-185 5-199 (260)
47 PRK06142 enoyl-CoA hydratase; 98.7 3.5E-06 7.6E-11 72.2 18.6 179 1-186 2-212 (272)
48 cd07016 S14_ClpP_1 Caseinolyti 98.7 1.6E-07 3.4E-12 74.3 9.5 89 28-131 7-98 (160)
49 PRK05995 enoyl-CoA hydratase; 98.7 3.1E-06 6.7E-11 72.0 18.1 173 8-186 6-200 (262)
50 PRK08272 enoyl-CoA hydratase; 98.7 2.5E-06 5.5E-11 74.2 17.8 173 8-187 12-227 (302)
51 PRK09674 enoyl-CoA hydratase-i 98.7 4E-06 8.6E-11 71.2 18.6 172 8-186 4-194 (255)
52 PRK06127 enoyl-CoA hydratase; 98.7 5.9E-06 1.3E-10 70.7 19.7 174 7-187 12-209 (269)
53 PRK08258 enoyl-CoA hydratase; 98.7 4.1E-06 8.8E-11 72.0 18.7 175 6-186 17-216 (277)
54 PRK07854 enoyl-CoA hydratase; 98.7 2.6E-06 5.6E-11 71.9 17.1 163 8-176 2-178 (243)
55 cd06558 crotonase-like Crotona 98.7 3.4E-06 7.3E-11 68.0 16.8 166 10-181 3-190 (195)
56 TIGR03210 badI 2-ketocyclohexa 98.6 4.2E-06 9E-11 71.2 18.1 173 8-186 4-196 (256)
57 PRK07112 polyketide biosynthes 98.6 3.6E-06 7.7E-11 71.5 17.6 162 6-174 4-185 (255)
58 PRK07327 enoyl-CoA hydratase; 98.6 5.7E-06 1.2E-10 70.8 19.0 173 8-186 13-208 (268)
59 PRK05981 enoyl-CoA hydratase; 98.6 4.2E-06 9.1E-11 71.4 18.0 174 7-186 5-205 (266)
60 TIGR01929 menB naphthoate synt 98.6 3.4E-06 7.4E-11 71.8 17.3 173 8-186 4-199 (259)
61 PRK09120 p-hydroxycinnamoyl Co 98.6 4.6E-06 1E-10 71.7 18.3 174 8-188 10-208 (275)
62 PRK06495 enoyl-CoA hydratase; 98.6 6.4E-06 1.4E-10 70.0 18.9 170 7-187 5-197 (257)
63 PRK05980 enoyl-CoA hydratase; 98.6 6.4E-06 1.4E-10 70.0 18.5 174 7-186 4-202 (260)
64 PRK05809 3-hydroxybutyryl-CoA 98.6 4.7E-06 1E-10 70.9 17.6 173 8-187 6-200 (260)
65 PLN02664 enoyl-CoA hydratase/d 98.6 7E-06 1.5E-10 70.5 18.4 178 1-184 1-212 (275)
66 PRK07110 polyketide biosynthes 98.6 5.3E-06 1.2E-10 70.2 17.4 176 5-187 4-197 (249)
67 PRK07468 enoyl-CoA hydratase; 98.6 6.9E-06 1.5E-10 70.0 17.7 173 7-186 5-201 (262)
68 PRK07799 enoyl-CoA hydratase; 98.6 9.5E-06 2.1E-10 69.1 18.5 178 1-186 1-202 (263)
69 PRK06190 enoyl-CoA hydratase; 98.6 7.3E-06 1.6E-10 69.9 17.8 173 8-186 6-196 (258)
70 PRK07260 enoyl-CoA hydratase; 98.6 6.3E-06 1.4E-10 69.9 17.3 172 8-187 4-201 (255)
71 cd07015 Clp_protease_NfeD Nodu 98.6 2.4E-06 5.1E-11 68.9 13.7 131 28-172 8-165 (172)
72 PRK03580 carnitinyl-CoA dehydr 98.6 9.7E-06 2.1E-10 69.1 18.2 173 7-186 4-196 (261)
73 PRK08260 enoyl-CoA hydratase; 98.6 8E-06 1.7E-10 70.9 17.8 172 7-184 5-213 (296)
74 PRK07396 dihydroxynaphthoic ac 98.6 9.6E-06 2.1E-10 69.6 17.9 173 7-185 14-208 (273)
75 PRK06210 enoyl-CoA hydratase; 98.5 6.4E-06 1.4E-10 70.5 16.6 174 7-186 6-210 (272)
76 PRK05862 enoyl-CoA hydratase; 98.5 9.1E-06 2E-10 69.0 17.3 172 7-184 5-194 (257)
77 PLN02267 enoyl-CoA hydratase/i 98.5 2E-05 4.4E-10 66.4 19.0 174 9-188 3-201 (239)
78 PRK06494 enoyl-CoA hydratase; 98.5 1.6E-05 3.4E-10 67.7 18.3 173 7-186 5-196 (259)
79 PRK06563 enoyl-CoA hydratase; 98.5 1.3E-05 2.9E-10 67.9 17.7 169 10-183 3-191 (255)
80 PRK07938 enoyl-CoA hydratase; 98.5 1.6E-05 3.4E-10 67.4 18.1 166 13-186 9-193 (249)
81 PRK07658 enoyl-CoA hydratase; 98.5 1.2E-05 2.6E-10 68.2 17.3 172 8-186 4-196 (257)
82 PRK08259 enoyl-CoA hydratase; 98.5 1.2E-05 2.5E-10 68.4 17.1 173 5-184 2-193 (254)
83 PRK07657 enoyl-CoA hydratase; 98.5 2E-05 4.3E-10 67.1 18.6 174 7-186 4-199 (260)
84 PRK05869 enoyl-CoA hydratase; 98.5 1.8E-05 3.9E-10 66.0 17.6 159 21-187 23-202 (222)
85 PRK08252 enoyl-CoA hydratase; 98.5 1.6E-05 3.5E-10 67.4 17.6 173 7-186 4-193 (254)
86 PRK05864 enoyl-CoA hydratase; 98.5 1.1E-05 2.4E-10 69.3 16.6 176 4-186 4-212 (276)
87 PRK08290 enoyl-CoA hydratase; 98.5 1.4E-05 3E-10 69.2 16.8 173 8-188 6-220 (288)
88 PLN02600 enoyl-CoA hydratase 98.5 4.6E-05 1E-09 64.6 19.2 157 22-184 11-188 (251)
89 TIGR03189 dienoyl_CoA_hyt cycl 98.4 3.9E-05 8.6E-10 65.1 18.5 159 8-174 3-178 (251)
90 PRK05870 enoyl-CoA hydratase; 98.4 2.9E-05 6.2E-10 65.7 17.6 157 8-170 5-181 (249)
91 cd00394 Clp_protease_like Case 98.4 7.1E-06 1.5E-10 64.6 12.6 89 28-130 6-96 (161)
92 PLN02921 naphthoate synthase 98.4 5E-05 1.1E-09 67.1 18.8 173 8-186 67-263 (327)
93 PLN03214 probable enoyl-CoA hy 98.4 7.7E-05 1.7E-09 64.3 19.6 174 7-186 12-210 (278)
94 PRK00277 clpP ATP-dependent Cl 98.4 8.7E-06 1.9E-10 67.0 13.0 135 26-172 36-196 (200)
95 PRK07509 enoyl-CoA hydratase; 98.4 3.3E-05 7.1E-10 65.7 17.0 161 6-172 3-190 (262)
96 PRK08321 naphthoate synthase; 98.4 5.5E-05 1.2E-09 65.9 18.3 169 13-187 32-239 (302)
97 PLN02888 enoyl-CoA hydratase 98.4 5.7E-05 1.2E-09 64.6 18.0 170 8-183 11-198 (265)
98 PRK12553 ATP-dependent Clp pro 98.4 5.9E-06 1.3E-10 68.4 11.1 133 26-172 40-202 (207)
99 COG1024 CaiD Enoyl-CoA hydrata 98.3 0.00012 2.5E-09 62.2 17.7 171 9-186 8-201 (257)
100 TIGR00706 SppA_dom signal pept 98.3 5.9E-05 1.3E-09 62.2 14.9 89 28-129 9-99 (207)
101 PRK08788 enoyl-CoA hydratase; 98.2 0.00025 5.4E-09 61.6 19.3 166 16-187 26-224 (287)
102 PRK07827 enoyl-CoA hydratase; 98.2 9.1E-05 2E-09 63.0 16.4 157 7-171 7-187 (260)
103 cd07019 S49_SppA_1 Signal pept 98.2 4E-05 8.7E-10 63.4 13.8 84 34-128 22-107 (211)
104 cd07013 S14_ClpP Caseinolytic 98.2 2.9E-05 6.2E-10 61.8 11.9 90 27-130 6-99 (162)
105 PRK05617 3-hydroxyisobutyryl-C 98.2 7.1E-05 1.5E-09 66.4 15.3 164 8-178 5-193 (342)
106 PRK12478 enoyl-CoA hydratase; 98.2 0.00013 2.8E-09 63.6 16.4 172 8-186 7-211 (298)
107 PRK14512 ATP-dependent Clp pro 98.2 5.5E-05 1.2E-09 62.2 12.8 133 26-172 28-188 (197)
108 CHL00028 clpP ATP-dependent Cl 98.2 5E-05 1.1E-09 62.7 12.4 135 26-174 35-198 (200)
109 cd07022 S49_Sppa_36K_type Sign 98.1 8.4E-05 1.8E-09 61.6 13.2 91 26-128 18-110 (214)
110 TIGR03222 benzo_boxC benzoyl-C 98.1 0.0003 6.4E-09 66.2 18.2 179 7-189 12-229 (546)
111 TIGR03200 dearomat_oah 6-oxocy 98.1 0.00069 1.5E-08 60.5 18.8 156 13-174 34-214 (360)
112 PRK11730 fadB multifunctional 98.1 0.00062 1.3E-08 66.0 19.8 174 7-187 7-205 (715)
113 PLN02874 3-hydroxyisobutyryl-C 98.0 0.00042 9E-09 62.4 17.1 164 7-177 12-197 (379)
114 PRK14514 ATP-dependent Clp pro 98.0 0.0001 2.2E-09 61.7 11.8 133 26-172 59-219 (221)
115 PRK06072 enoyl-CoA hydratase; 98.0 0.00052 1.1E-08 58.1 16.3 153 10-169 4-173 (248)
116 cd07017 S14_ClpP_2 Caseinolyti 98.0 6.5E-05 1.4E-09 60.2 10.2 91 26-130 14-108 (171)
117 TIGR02440 FadJ fatty oxidation 98.0 0.0004 8.7E-09 67.1 17.2 158 17-180 11-194 (699)
118 PRK12551 ATP-dependent Clp pro 98.0 0.00014 3.1E-09 59.7 12.1 134 26-173 30-191 (196)
119 cd07018 S49_SppA_67K_type Sign 98.0 0.00016 3.4E-09 60.3 12.5 89 30-130 26-116 (222)
120 PRK11154 fadJ multifunctional 98.0 0.00076 1.7E-08 65.3 18.6 170 6-181 5-200 (708)
121 TIGR02441 fa_ox_alpha_mit fatt 98.0 0.00069 1.5E-08 65.9 18.3 160 7-172 14-198 (737)
122 PRK08184 benzoyl-CoA-dihydrodi 98.0 0.0011 2.4E-08 62.5 18.8 179 7-190 16-234 (550)
123 TIGR00493 clpP ATP-dependent C 97.9 0.00025 5.4E-09 58.0 12.7 92 26-130 31-125 (191)
124 TIGR00705 SppA_67K signal pept 97.9 0.00013 2.8E-09 69.1 12.3 100 15-125 308-412 (584)
125 PLN02157 3-hydroxyisobutyryl-C 97.9 0.0013 2.9E-08 59.6 17.9 172 7-186 38-233 (401)
126 PRK14513 ATP-dependent Clp pro 97.9 0.00033 7.1E-09 57.8 12.6 135 26-174 32-194 (201)
127 PF00574 CLP_protease: Clp pro 97.9 0.00012 2.6E-09 58.9 9.6 90 26-129 21-114 (182)
128 cd07023 S49_Sppa_N_C Signal pe 97.9 0.00016 3.5E-09 59.5 10.4 91 28-129 9-104 (208)
129 TIGR02437 FadB fatty oxidation 97.9 0.0023 5E-08 62.1 19.7 170 7-183 7-201 (714)
130 KOG0368|consensus 97.8 9.3E-05 2E-09 74.8 9.9 178 3-191 1532-1777(2196)
131 PLN02851 3-hydroxyisobutyryl-C 97.8 0.002 4.3E-08 58.6 17.8 171 5-184 41-236 (407)
132 PLN02988 3-hydroxyisobutyryl-C 97.8 0.0022 4.8E-08 57.8 17.1 166 5-177 8-197 (381)
133 COG1030 NfeD Membrane-bound se 97.7 0.00025 5.5E-09 64.3 10.3 98 13-129 24-126 (436)
134 PRK08184 benzoyl-CoA-dihydrodi 97.7 0.0022 4.8E-08 60.4 16.6 170 11-186 267-483 (550)
135 TIGR03222 benzo_boxC benzoyl-C 97.7 0.0062 1.3E-07 57.4 18.5 156 28-187 293-480 (546)
136 PRK12552 ATP-dependent Clp pro 97.6 0.00057 1.2E-08 57.2 9.6 142 26-172 35-214 (222)
137 KOG0840|consensus 97.6 0.00029 6.2E-09 59.7 7.7 141 26-178 97-264 (275)
138 KOG1680|consensus 97.5 0.0018 4E-08 55.6 11.9 162 9-174 39-217 (290)
139 COG0616 SppA Periplasmic serin 97.4 0.0017 3.7E-08 57.1 10.5 101 16-129 60-166 (317)
140 COG0740 ClpP Protease subunit 97.4 0.0018 3.8E-08 53.4 9.8 136 26-174 32-194 (200)
141 PF01972 SDH_sah: Serine dehyd 97.3 0.004 8.6E-08 53.6 11.0 89 27-131 69-158 (285)
142 PRK11778 putative inner membra 97.1 0.0051 1.1E-07 54.5 9.9 98 16-129 91-192 (330)
143 KOG0016|consensus 97.0 0.092 2E-06 44.8 16.2 168 7-179 8-202 (266)
144 PRK10949 protease 4; Provision 96.8 0.056 1.2E-06 51.8 15.1 99 14-126 325-431 (618)
145 COG0447 MenB Dihydroxynaphthoi 96.6 0.0036 7.7E-08 52.3 4.8 162 18-184 31-216 (282)
146 PRK10949 protease 4; Provision 93.1 2 4.3E-05 41.3 12.6 86 33-130 95-183 (618)
147 KOG1679|consensus 92.3 3.2 6.9E-05 35.0 11.2 144 26-175 51-215 (291)
148 TIGR00705 SppA_67K signal pept 91.4 4 8.6E-05 39.0 12.4 85 32-129 75-163 (584)
149 KOG1682|consensus 88.6 2.3 4.9E-05 35.6 7.2 100 72-181 110-221 (287)
150 PF01343 Peptidase_S49: Peptid 88.4 0.62 1.3E-05 36.4 3.7 42 84-129 3-44 (154)
151 KOG1681|consensus 88.4 0.19 4E-06 42.6 0.7 167 3-173 17-216 (292)
152 COG4245 TerY Uncharacterized p 72.1 8.1 0.00018 31.8 4.7 48 48-95 2-51 (207)
153 COG1570 XseA Exonuclease VII, 71.1 14 0.00031 34.1 6.6 83 28-122 171-254 (440)
154 KOG0259|consensus 58.9 14 0.0003 33.7 4.1 46 6-54 190-237 (447)
155 PF02601 Exonuc_VII_L: Exonucl 51.2 52 0.0011 28.5 6.4 82 29-122 51-136 (319)
156 PF06626 DUF1152: Protein of u 51.1 57 0.0012 28.6 6.5 65 35-99 102-168 (297)
157 PRK13600 putative ribosomal pr 49.6 45 0.00097 23.6 4.7 32 16-56 31-62 (84)
158 PRK13602 putative ribosomal pr 49.4 45 0.00098 23.2 4.7 35 13-56 26-60 (82)
159 PRK00286 xseA exodeoxyribonucl 47.2 75 0.0016 28.9 7.0 83 28-122 171-253 (438)
160 COG0052 RpsB Ribosomal protein 46.6 32 0.00069 29.4 4.1 37 12-59 153-189 (252)
161 COG1136 SalX ABC-type antimicr 46.0 46 0.001 28.0 5.0 13 51-63 161-173 (226)
162 TIGR01012 Sa_S2_E_A ribosomal 42.9 24 0.00051 29.1 2.7 22 39-60 121-142 (196)
163 PRK12311 rpsB 30S ribosomal pr 42.7 21 0.00045 31.7 2.6 37 13-60 150-186 (326)
164 TIGR01011 rpsB_bact ribosomal 42.4 22 0.00048 29.7 2.6 36 14-60 154-189 (225)
165 TIGR00237 xseA exodeoxyribonuc 42.4 83 0.0018 28.9 6.5 82 29-122 166-248 (432)
166 PRK04020 rps2P 30S ribosomal p 42.0 24 0.00052 29.2 2.7 22 39-60 127-148 (204)
167 CHL00067 rps2 ribosomal protei 41.9 24 0.00052 29.6 2.7 37 13-60 159-195 (230)
168 cd01425 RPS2 Ribosomal protein 41.7 25 0.00054 28.5 2.7 22 39-60 140-161 (193)
169 PRK09435 membrane ATPase/prote 41.5 65 0.0014 28.6 5.5 50 12-62 82-160 (332)
170 PF00448 SRP54: SRP54-type pro 41.3 87 0.0019 25.4 5.9 15 11-25 26-40 (196)
171 PRK05299 rpsB 30S ribosomal pr 40.7 24 0.00051 30.2 2.5 37 13-60 155-191 (258)
172 PRK09732 hypothetical protein; 40.6 64 0.0014 24.8 4.7 34 30-63 7-42 (134)
173 PF01248 Ribosomal_L7Ae: Ribos 39.8 33 0.00072 24.0 2.9 34 15-56 32-65 (95)
174 PF00318 Ribosomal_S2: Ribosom 39.4 29 0.00063 28.6 2.8 22 39-60 156-177 (211)
175 COG3222 Uncharacterized protei 39.4 87 0.0019 25.8 5.4 61 33-108 88-149 (211)
176 COG4181 Predicted ABC-type tra 39.3 53 0.0011 27.2 4.2 40 14-55 163-203 (228)
177 KOG1470|consensus 38.5 1.9E+02 0.0041 25.7 7.9 76 3-83 100-181 (324)
178 PRK01018 50S ribosomal protein 37.7 86 0.0019 22.6 4.8 35 15-58 33-67 (99)
179 PTZ00254 40S ribosomal protein 37.6 30 0.00064 29.6 2.6 21 40-60 132-152 (249)
180 PF11020 DUF2610: Domain of un 37.0 43 0.00094 23.6 2.9 27 26-52 42-68 (82)
181 PF10609 ParA: ParA/MinD ATPas 36.4 52 0.0011 23.2 3.3 27 35-61 39-65 (81)
182 PF05990 DUF900: Alpha/beta hy 35.6 2.6E+02 0.0055 23.2 9.6 85 13-101 16-104 (233)
183 COG0634 Hpt Hypoxanthine-guani 35.5 56 0.0012 26.5 3.8 41 162-202 95-141 (178)
184 COG3977 Alanine-alpha-ketoisov 35.0 70 0.0015 28.6 4.5 46 9-59 173-220 (417)
185 PF07905 PucR: Purine cataboli 34.9 33 0.00072 25.5 2.3 22 40-61 90-111 (123)
186 COG0816 Predicted endonuclease 34.4 86 0.0019 24.4 4.6 39 16-55 54-94 (141)
187 PRK00103 rRNA large subunit me 34.4 1.7E+02 0.0037 23.1 6.3 69 52-136 69-137 (157)
188 PRK09722 allulose-6-phosphate 32.9 1.5E+02 0.0033 24.8 6.1 11 14-24 108-118 (229)
189 COG1797 CobB Cobyrinic acid a, 32.3 1.5E+02 0.0034 27.5 6.5 21 43-63 105-125 (451)
190 PF03928 DUF336: Domain of unk 32.0 75 0.0016 23.8 3.9 34 30-63 3-38 (132)
191 PF13285 DUF4073: Domain of un 31.8 44 0.00095 26.3 2.5 24 2-25 48-71 (158)
192 PLN02974 adenosylmethionine-8- 31.7 1E+02 0.0022 30.9 5.6 78 14-106 582-663 (817)
193 PF14307 Glyco_tran_WbsX: Glyc 30.9 1E+02 0.0022 27.2 5.1 18 172-189 293-310 (345)
194 PTZ00106 60S ribosomal protein 30.9 1.2E+02 0.0027 22.3 4.7 35 15-58 42-76 (108)
195 cd01464 vWA_subfamily VWA subf 30.2 2.1E+02 0.0045 22.1 6.3 19 48-66 2-20 (176)
196 PRK08227 autoinducer 2 aldolas 30.0 1.8E+02 0.004 25.0 6.3 25 32-56 123-147 (264)
197 PF02639 DUF188: Uncharacteriz 29.8 47 0.001 25.4 2.4 23 41-63 2-24 (130)
198 COG2884 FtsE Predicted ATPase 29.6 1E+02 0.0022 25.8 4.4 15 49-63 154-168 (223)
199 PF10881 DUF2726: Protein of u 29.0 2.1E+02 0.0045 21.0 5.8 47 12-61 66-113 (126)
200 PLN02743 nicotinamidase 28.7 1.9E+02 0.004 24.4 6.0 24 36-59 61-84 (239)
201 PF12982 DUF3866: Protein of u 28.0 4.3E+02 0.0094 23.5 10.1 104 11-134 86-204 (320)
202 cd05014 SIS_Kpsf KpsF-like pro 27.6 89 0.0019 22.6 3.6 28 36-63 61-88 (128)
203 PRK13601 putative L7Ae-like ri 27.6 1.6E+02 0.0035 20.6 4.6 31 16-55 26-56 (82)
204 PF08645 PNK3P: Polynucleotide 27.1 2.5E+02 0.0054 21.8 6.2 48 10-58 41-90 (159)
205 TIGR00064 ftsY signal recognit 26.9 4E+02 0.0086 22.7 8.2 14 11-24 97-110 (272)
206 PRK06683 hypothetical protein; 26.8 1.8E+02 0.0039 20.3 4.8 32 16-56 29-60 (82)
207 COG0647 NagD Predicted sugar p 26.7 90 0.0019 26.9 3.8 27 38-64 29-55 (269)
208 PF01343 Peptidase_S49: Peptid 26.6 45 0.00098 25.8 1.8 27 156-182 124-150 (154)
209 COG1703 ArgK Putative periplas 25.7 36 0.00077 30.2 1.2 24 8-31 73-99 (323)
210 PRK07714 hypothetical protein; 25.4 1.7E+02 0.0037 20.9 4.6 32 15-55 35-66 (100)
211 PRK07283 hypothetical protein; 25.3 1.7E+02 0.0038 20.9 4.6 32 16-56 36-67 (98)
212 KOG0073|consensus 25.0 1.9E+02 0.0041 23.5 5.1 53 11-63 114-166 (185)
213 TIGR03614 RutB pyrimidine util 24.9 2.2E+02 0.0048 23.3 5.8 25 34-58 47-71 (226)
214 TIGR03677 rpl7ae 50S ribosomal 24.7 1.5E+02 0.0033 22.0 4.3 18 38-55 58-75 (117)
215 PF10758 DUF2586: Protein of u 24.4 2.6E+02 0.0055 25.4 6.3 67 40-107 119-185 (363)
216 PF06373 CART: Cocaine and amp 24.3 24 0.00052 24.2 -0.1 31 173-203 8-38 (73)
217 PF03969 AFG1_ATPase: AFG1-lik 24.0 4.3E+02 0.0094 23.7 7.8 75 7-93 242-325 (362)
218 PHA03050 glutaredoxin; Provisi 23.7 2.7E+02 0.0059 20.2 5.5 76 8-103 6-84 (108)
219 PF02110 HK: Hydroxyethylthiaz 23.6 1.2E+02 0.0025 25.9 3.9 50 10-61 28-89 (246)
220 COG2145 ThiM Hydroxyethylthiaz 23.4 1.1E+02 0.0024 26.4 3.7 34 26-61 62-95 (265)
221 PRK11440 putative hydrolase; P 23.2 1.3E+02 0.0028 23.7 4.0 26 33-58 32-57 (188)
222 cd03028 GRX_PICOT_like Glutare 23.1 2E+02 0.0043 19.9 4.5 78 9-105 2-80 (90)
223 TIGR02751 PEPCase_arch phospho 23.0 1.7E+02 0.0036 27.7 5.1 50 12-61 202-254 (506)
224 PRK07482 hypothetical protein; 23.0 2.5E+02 0.0055 25.8 6.3 74 15-103 219-295 (461)
225 PRK06173 adenosylmethionine--8 22.9 84 0.0018 28.7 3.1 77 14-105 204-284 (429)
226 TIGR03181 PDH_E1_alph_x pyruva 22.9 2.1E+02 0.0045 25.3 5.6 45 13-64 143-187 (341)
227 PF02590 SPOUT_MTase: Predicte 22.6 2.7E+02 0.0058 21.9 5.5 70 51-136 68-137 (155)
228 PRK12724 flagellar biosynthesi 22.5 3.9E+02 0.0084 24.8 7.3 12 53-64 302-313 (432)
229 TIGR03217 4OH_2_O_val_ald 4-hy 22.4 2.4E+02 0.0052 24.9 5.8 30 35-64 142-171 (333)
230 PTZ00222 60S ribosomal protein 22.4 1.2E+02 0.0026 26.1 3.7 34 15-56 149-182 (263)
231 PF03308 ArgK: ArgK protein; 22.4 52 0.0011 28.5 1.5 20 12-31 55-77 (266)
232 PRK07765 para-aminobenzoate sy 22.3 1.1E+02 0.0025 25.0 3.5 31 26-56 53-83 (214)
233 PF01301 Glyco_hydro_35: Glyco 22.3 94 0.002 27.3 3.2 45 9-53 1-80 (319)
234 CHL00149 odpA pyruvate dehydro 21.9 2.2E+02 0.0048 25.2 5.5 44 14-64 157-200 (341)
235 COG1071 AcoA Pyruvate/2-oxoglu 21.9 1.4E+02 0.0029 27.0 4.1 53 40-97 178-231 (358)
236 PRK05965 hypothetical protein; 21.8 2.3E+02 0.0049 26.1 5.7 74 16-104 215-291 (459)
237 KOG0780|consensus 21.8 4.9E+02 0.011 24.2 7.6 51 10-61 125-194 (483)
238 COG3638 ABC-type phosphate/pho 21.8 1.5E+02 0.0032 25.5 4.1 18 113-130 215-232 (258)
239 PRK07481 hypothetical protein; 21.6 2.5E+02 0.0054 25.7 6.0 74 15-103 212-288 (449)
240 PRK12403 putative aminotransfe 21.6 2.8E+02 0.0061 25.5 6.3 74 15-104 221-298 (460)
241 PRK07678 aminotransferase; Val 21.5 2.9E+02 0.0062 25.3 6.3 74 15-103 212-288 (451)
242 PF00682 HMGL-like: HMGL-like 21.5 1.3E+02 0.0028 24.6 3.8 28 36-63 137-164 (237)
243 COG1160 Predicted GTPases [Gen 21.5 44 0.00096 31.0 1.0 44 11-65 22-65 (444)
244 COG2144 Selenophosphate synthe 21.5 1.9E+02 0.004 25.7 4.7 39 12-54 90-129 (324)
245 cd01012 YcaC_related YcaC rela 21.4 1.7E+02 0.0038 22.3 4.3 29 31-59 18-46 (157)
246 PF01926 MMR_HSR1: 50S ribosom 21.4 2.8E+02 0.006 19.5 5.1 11 54-64 50-60 (116)
247 PF11111 CENP-M: Centromere pr 21.3 2.4E+02 0.0052 22.9 5.1 66 16-92 98-163 (176)
248 PF01380 SIS: SIS domain SIS d 21.2 2.9E+02 0.0062 19.7 5.3 20 40-59 71-90 (131)
249 PF06858 NOG1: Nucleolar GTP-b 21.1 2.6E+02 0.0056 18.4 4.7 41 47-94 12-54 (58)
250 PLN02760 4-aminobutyrate:pyruv 20.8 2.6E+02 0.0056 26.2 6.0 73 15-103 259-335 (504)
251 PRK07036 hypothetical protein; 20.8 2.8E+02 0.006 25.6 6.1 74 15-103 219-296 (466)
252 PRK06186 hypothetical protein; 20.7 91 0.002 26.3 2.7 29 27-56 61-89 (229)
253 smart00053 DYNc Dynamin, GTPas 20.7 2.1E+02 0.0045 24.1 4.9 37 49-85 123-160 (240)
254 PF01855 POR_N: Pyruvate flavo 20.7 1.2E+02 0.0027 25.3 3.5 28 32-59 127-155 (230)
255 cd07943 DRE_TIM_HOA 4-hydroxy- 20.6 5.1E+02 0.011 21.7 7.5 29 36-64 141-169 (263)
256 cd05005 SIS_PHI Hexulose-6-pho 20.4 1.4E+02 0.0031 23.3 3.7 28 35-62 88-115 (179)
257 PRK14974 cell division protein 20.4 6.1E+02 0.013 22.5 8.1 23 40-63 213-235 (336)
258 COG1830 FbaB DhnA-type fructos 20.3 3.8E+02 0.0083 23.2 6.4 34 30-63 124-157 (265)
259 TIGR00789 flhB_rel flhB C-term 20.3 1.1E+02 0.0025 21.4 2.7 19 36-54 27-45 (82)
260 COG0108 RibB 3,4-dihydroxy-2-b 20.2 1E+02 0.0022 25.6 2.7 38 15-58 156-194 (203)
261 PRK06852 aldolase; Validated 20.2 2.9E+02 0.0062 24.4 5.7 32 32-63 150-181 (304)
262 PRK06541 hypothetical protein; 20.1 3E+02 0.0066 25.3 6.2 74 14-103 219-296 (460)
No 1
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=5.8e-51 Score=370.19 Aligned_cols=194 Identities=57% Similarity=0.935 Sum_probs=183.2
Q ss_pred eeeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCC
Q psy5160 10 SSEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTV 88 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~v 88 (203)
-.|+|+||||||||++ +||.|++++++|++|||++|+.++||||+|+|+|||++|..+|..|++++++++++++++++|
T Consensus 319 aRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatV 398 (526)
T COG4799 319 ARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATV 398 (526)
T ss_pred EEECCEEEEEEecCccccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccC
Confidence 3689999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchh------------hhhhHHHHhhhcCC
Q psy5160 89 PKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKD------------KSNYEVEYNDKFRS 156 (203)
Q Consensus 89 P~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~------------~~e~~~~~~~~~~~ 156 (203)
|+|+||+|++|||++++|+++.+.+||+||||+++++|||||+|++++|+.+++ .+++.++|.+.+.+
T Consensus 399 PkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~ 478 (526)
T COG4799 399 PKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSN 478 (526)
T ss_pred CeEEEEecccccceeeeecCccCCCceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999975533 13356778887789
Q ss_pred HHHHHHcCCcceecCCcchHHHHHHHHHHhhcC-CCCCCCCCCCCCCC
Q psy5160 157 PVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNK-KQDNPYKKHGNIPL 203 (203)
Q Consensus 157 ~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~-~~~~p~~~~~~~~~ 203 (203)
|+.++++|+||+||+|.+||.+|.+.|+.+..+ ....|.|||+|+|+
T Consensus 479 p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~~~~~~~kk~g~~~~ 526 (526)
T COG4799 479 PYYAAERGYIDAVIDPADTRAVLGRALSALANKPVVETPLKKHGNIPL 526 (526)
T ss_pred hHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCccccccccccCCCCC
Confidence 999999999999999999999999999999999 66788999999996
No 2
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.5e-45 Score=337.70 Aligned_cols=193 Identities=58% Similarity=0.989 Sum_probs=180.2
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
+|+|+||+|+|||++ ++|++++++++|++||+++|+++++|||+|+|||||++|.++|..|+++++++++.++++.+||
T Consensus 311 ri~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 390 (512)
T TIGR01117 311 RINGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVP 390 (512)
T ss_pred EECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 689999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchh--------hhhhHHHHhhhcCCHHHHH
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKD--------KSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~--------~~e~~~~~~~~~~~~~~~~ 161 (203)
+|+||+|+++||++++|+++++.+|++||||++++++|||++++.++|+++++ ..+..++|.+...+|++++
T Consensus 391 ~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a 470 (512)
T TIGR01117 391 KVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAA 470 (512)
T ss_pred EEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999987532 1222345556678999999
Q ss_pred HcCCcceecCCcchHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy5160 162 KKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203 (203)
Q Consensus 162 ~~G~iD~Vi~p~~tR~~l~~~L~~l~~~~~~~p~~~~~~~~~ 203 (203)
++|+||+||+|.|||++|+++|+.+.++....|+|||+|+|+
T Consensus 471 ~~g~vD~VI~P~~tR~~l~~~l~~~~~~~~~~~~~~~~~~p~ 512 (512)
T TIGR01117 471 ARGYVDDVIEPKQTRPKIVNALAMLESKREKLPPKKHGNIPL 512 (512)
T ss_pred hcCCCCeeEChHHHHHHHHHHHHHHhcCcccCCCCCCCCCCC
Confidence 999999999999999999999999999888889999999995
No 3
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=9.2e-46 Score=339.96 Aligned_cols=192 Identities=51% Similarity=0.865 Sum_probs=169.4
Q ss_pred eeeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCC
Q psy5160 10 SSEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTV 88 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~v 88 (203)
-.++|+||||||||++ ++|++++++++|++||+++|++++||||+|+|||||++|.++|+.|+++++++++.++++++|
T Consensus 289 arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~v 368 (493)
T PF01039_consen 289 ARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATV 368 (493)
T ss_dssp EEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S
T ss_pred eeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCC
Confidence 3689999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhh------------hhhHHHHhhhcCC
Q psy5160 89 PKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDK------------SNYEVEYNDKFRS 156 (203)
Q Consensus 89 P~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~------------~e~~~~~~~~~~~ 156 (203)
|+|+||+|++|||++++|+++++.+|+++|||++++++|+||+++.++|+++.+. .+..++|.+...+
T Consensus 369 P~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (493)
T PF01039_consen 369 PKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSS 448 (493)
T ss_dssp -EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSS
T ss_pred CEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999766431 2233445556689
Q ss_pred HHHHHHcCCcceecCCcchHHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy5160 157 PVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNI 201 (203)
Q Consensus 157 ~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~~~~~p~~~~~~~ 201 (203)
|+++++++++|+||+|++||.+|+++|+.+.+++...|+|||+||
T Consensus 449 ~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~~~~~~rkh~~i 493 (493)
T PF01039_consen 449 PYRAASRGYVDDIIDPAETRKVLIAALEMLWQKPRFLPWRKHRNI 493 (493)
T ss_dssp HHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSHCHHHCHSHHHC
T ss_pred HHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCcccccccccccC
Confidence 999999999999999999999999999999999999999999886
No 4
>KOG0540|consensus
Probab=100.00 E-value=3.7e-44 Score=316.44 Aligned_cols=190 Identities=41% Similarity=0.672 Sum_probs=176.5
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
+++|+||||++|||+ .||+++.+++.|.+|||++|++++||||+|+|++||++|..+|..|+.++++++++++++++||
T Consensus 345 rlnG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvp 424 (536)
T KOG0540|consen 345 RLNGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVP 424 (536)
T ss_pred eECCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCc
Confidence 789999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCch-hhhhhHHHHhhhcCCHHHHHHcCCcce
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEK-DKSNYEVEYNDKFRSPVAAAKKGYIDD 168 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~-~~~e~~~~~~~~~~~~~~~~~~G~iD~ 168 (203)
+||+++|++|||++. ||++++.+|+.||||+|+|+|||.+.++.++++.++ +..+..+++.|.+.+|+.++.+||+|+
T Consensus 425 kITiit~~syGG~y~-m~sr~~~gd~~yawP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f~npy~a~~Rg~~D~ 503 (536)
T KOG0540|consen 425 KITIITGGSYGGNYA-MCSRGYSGDINYAWPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKFGNPYYAAARGWDDG 503 (536)
T ss_pred eEEEEecCccCCccc-ccccccCCceeEEcccceeeeccccchhhhhhhhhhhhhhhhcchHHHHhcCccHHHHhhcccc
Confidence 999999999996666 999999999999999999999999999999987643 233344567788899999999999999
Q ss_pred ecCCcchHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy5160 169 IIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203 (203)
Q Consensus 169 Vi~p~~tR~~l~~~L~~l~~~~~~~p~~~~~~~~~ 203 (203)
||+|.+||..|...|..+..++.+. +|||++|+
T Consensus 504 II~p~~tR~vl~~~l~~~~~~pl~~--~k~g~~~m 536 (536)
T KOG0540|consen 504 IIDPSDTRKVLGLDLQAAANKPLQT--TKFGVFRM 536 (536)
T ss_pred ccChhHhhHHHHHHHHHHhcCCCcc--cccccccC
Confidence 9999999999999999998887655 99999986
No 5
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.1e-42 Score=322.40 Aligned_cols=187 Identities=28% Similarity=0.465 Sum_probs=166.9
Q ss_pred eeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
-.|+|+||||+||| |++++++++|++||+++|+++++|||+|+|||||++|.++|..|+.+++++++.++++++||
T Consensus 366 aRi~G~~VgvvAn~----g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP 441 (569)
T PLN02820 366 ARIYGQPVGIIGNN----GILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVP 441 (569)
T ss_pred EEECCEEEEEEEEC----CccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 47999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchh------------hh----hhHHHHhhh
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKD------------KS----NYEVEYNDK 153 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~------------~~----e~~~~~~~~ 153 (203)
+|+||+|++||+++++|+++++.+|+++|||++++++|||++++.++|+.+++ .+ +..++|.+.
T Consensus 442 ~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (569)
T PLN02820 442 KITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYER 521 (569)
T ss_pred EEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975331 11 111234455
Q ss_pred cCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy5160 154 FRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHGNIP 202 (203)
Q Consensus 154 ~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~~~~~p~~~~~~~~ 202 (203)
..+|++++++|+||+||||+|||++|.++|+.+...+.+. .++|+++
T Consensus 522 ~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~~~~~--~~~g~~r 568 (569)
T PLN02820 522 EANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNRSPED--TKFGVFR 568 (569)
T ss_pred hCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcCCCCC--CCCCccC
Confidence 6899999999999999999999999999999887665522 5666654
No 6
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=9.3e-37 Score=264.53 Aligned_cols=172 Identities=20% Similarity=0.295 Sum_probs=152.8
Q ss_pred eeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY 81 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~ 81 (203)
+++|+||+|+|||++ ++|++++++++|+.||+++|+++++|||+|+||||+++|.++|..|+.+++++++.
T Consensus 104 ri~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~ 183 (319)
T PRK05724 104 RLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLR 183 (319)
T ss_pred EECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHH
Confidence 689999999999982 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~ 161 (203)
++++.+||+|+||+|+|+||++++++ .+|+++|||++.++||+||+++.|+|++....++.++ .+..+|.+++
T Consensus 184 ~~a~~~VP~IsVIiGeg~sGGAla~~----~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae---~~~ita~~l~ 256 (319)
T PRK05724 184 EMARLKVPIICTVIGEGGSGGALAIG----VGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAE---AMKITAQDLK 256 (319)
T ss_pred HHhCCCCCEEEEEeCCccHHHHHHHh----ccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHH---HcCCCHHHHH
Confidence 99999999999999999999889887 6999999999999999999999999998765555444 2346899999
Q ss_pred HcCCcceecC-C------------cchHHHHHHHHHHhhcC
Q psy5160 162 KKGYIDDIIE-P------------RTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 162 ~~G~iD~Vi~-p------------~~tR~~l~~~L~~l~~~ 189 (203)
+.|+||+||+ | ..+++.|.+.|..|...
T Consensus 257 ~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~ 297 (319)
T PRK05724 257 ELGIIDEIIPEPLGGAHRDPEAAAAALKEALLEALAELKGL 297 (319)
T ss_pred HCCCceEeccCCCCCccCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999 4 12456667777666543
No 7
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=1.2e-36 Score=257.99 Aligned_cols=172 Identities=19% Similarity=0.290 Sum_probs=151.0
Q ss_pred eeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY 81 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~ 81 (203)
.+||+||+|++||+. ++|++++++++|+.||+++|+++++|||+|+||||++++.+.|..|+.+++++++.
T Consensus 51 ri~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~ 130 (256)
T PRK12319 51 YLAGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLM 130 (256)
T ss_pred EECCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHH
Confidence 589999999998752 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~ 161 (203)
++++.+||+|+||+|+|+||++++++ .+|+++|||++.+++|+||+++.|+|++....++. +++.+ .+|++++
T Consensus 131 ~~s~~~VP~IsVI~G~~~gGgA~a~~----~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~a-a~~~~--~~a~~l~ 203 (256)
T PRK12319 131 EMSDLKVPIIAIIIGEGGSGGALALA----VADQVWMLENTMYAVLSPEGFASILWKDGSRATEA-AELMK--ITAGELL 203 (256)
T ss_pred HHhCCCCCEEEEEeCCcCcHHHHHhh----cCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHH-HHHcC--CCHHHHH
Confidence 99999999999999999999999887 79999999999999999999999999876443333 33432 4899999
Q ss_pred HcCCcceecCCc---------chHHHHHHHHHHhhcC
Q psy5160 162 KKGYIDDIIEPR---------TTRMRIAQDLKFLLNK 189 (203)
Q Consensus 162 ~~G~iD~Vi~p~---------~tR~~l~~~L~~l~~~ 189 (203)
++|+||+||++. .+++.|.+.|..|...
T Consensus 204 ~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~ 240 (256)
T PRK12319 204 EMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQK 240 (256)
T ss_pred HCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999842 2566677777766544
No 8
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=2.1e-36 Score=262.04 Aligned_cols=172 Identities=22% Similarity=0.296 Sum_probs=151.3
Q ss_pred eeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY 81 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~ 81 (203)
+++|+||+|++||+. ++|++++++++|+.||+++|+++++|||+|+||||+++|.++|..|+.+++++++.
T Consensus 104 ri~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~ 183 (316)
T TIGR00513 104 RLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLR 183 (316)
T ss_pred EECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999972 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~ 161 (203)
++++.+||+|+||+|+|+||+++.++ .+|+++|||++.++||+||+++.|+|++....++.++ + ...+|.+++
T Consensus 184 a~s~~~VP~IsVViGeggsGGAla~~----~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae-~--~~~ta~~l~ 256 (316)
T TIGR00513 184 EMARLGVPVICTVIGEGGSGGALAIG----VGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAE-A--MKITAPDLK 256 (316)
T ss_pred HHHcCCCCEEEEEecccccHHHhhhc----cCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHH-H--ccCCHHHHH
Confidence 99999999999999999888888876 6999999999999999999999999998655444343 3 235899999
Q ss_pred HcCCcceecC-C------------cchHHHHHHHHHHhhcC
Q psy5160 162 KKGYIDDIIE-P------------RTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 162 ~~G~iD~Vi~-p------------~~tR~~l~~~L~~l~~~ 189 (203)
+.|+||+||+ | ..+++.|.+.|..|...
T Consensus 257 ~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~ 297 (316)
T TIGR00513 257 ELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQL 297 (316)
T ss_pred HCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999 4 12456677777766554
No 9
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=100.00 E-value=7.3e-36 Score=250.76 Aligned_cols=174 Identities=21% Similarity=0.209 Sum_probs=155.5
Q ss_pred eeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHH-H-hCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCC
Q psy5160 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFC-D-AFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a-~-~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~ 87 (203)
-+++|+||+|++|++. -.++.+++.|+++|+.+| + ++++|||+|+|||||++|.++|..|+.++++++++++++++
T Consensus 27 arl~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~ 104 (238)
T TIGR03134 27 AELAGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALAR 104 (238)
T ss_pred EEECCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999985 479999999999999885 5 49999999999999999999999999999999999998766
Q ss_pred ---CCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcC
Q psy5160 88 ---VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKG 164 (203)
Q Consensus 88 ---vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G 164 (203)
||+|+||+|+++||++++|+ +.+|+++|||++++++|+||++++|+|++..+.+|++++|+....++++++++|
T Consensus 105 ~~~vP~IsvI~g~a~ggg~lamg---~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G 181 (238)
T TIGR03134 105 LAGHPVIGLIYGKAISGAFLAHG---LQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLG 181 (238)
T ss_pred cCCCCEEEEEeCCccHHHHHHHc---cCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCC
Confidence 99999999999999999994 579999999999999999999999999988777888888876667899999999
Q ss_pred CcceecCCcc---hHHHHHHHHHHhhc
Q psy5160 165 YIDDIIEPRT---TRMRIAQDLKFLLN 188 (203)
Q Consensus 165 ~iD~Vi~p~~---tR~~l~~~L~~l~~ 188 (203)
.||+||+|.+ ..++|.+.++.+..
T Consensus 182 ~vd~vi~~~~~~~~~~~~~~~~~~~~~ 208 (238)
T TIGR03134 182 GVHALLDVADADAPAAQLAAVLAALAA 208 (238)
T ss_pred CccEEeCCCCcccHHHHHHHHHHhhhh
Confidence 9999999765 34677777765543
No 10
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=253.67 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=152.9
Q ss_pred eeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY 81 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~ 81 (203)
++||+||+|++||++ ++|++++++++|+.|++++|+++++|||+|+||||+++|.++|..|+.+++++++.
T Consensus 107 ri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~ 186 (322)
T CHL00198 107 KINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLR 186 (322)
T ss_pred EECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHH
Confidence 689999999999983 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~ 161 (203)
++++.+||+|+||+|+|+||++++++ .+|+++||+++.++|++||+++.|+|++....++.++. +.-++.++.
T Consensus 187 ~~a~~~VP~IsVViGeggsGGAlal~----~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~---~~ita~dL~ 259 (322)
T CHL00198 187 EMFSFEVPIICTIIGEGGSGGALGIG----IGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEA---LKITSEDLK 259 (322)
T ss_pred HHHcCCCCEEEEEeCcccHHHHHhhh----cCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHH---cCCCHHHHH
Confidence 99999999999999999988888886 69999999999999999999999999987766665553 346899999
Q ss_pred HcCCcceecC-C------------cchHHHHHHHHHHhhcC
Q psy5160 162 KKGYIDDIIE-P------------RTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 162 ~~G~iD~Vi~-p------------~~tR~~l~~~L~~l~~~ 189 (203)
+.|.||+||+ | ..+++.|.+.|..|...
T Consensus 260 ~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~ 300 (322)
T CHL00198 260 VLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKIL 300 (322)
T ss_pred hCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999 4 12456677777666544
No 11
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=1.9e-34 Score=255.52 Aligned_cols=172 Identities=21% Similarity=0.256 Sum_probs=149.1
Q ss_pred eeeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHH
Q psy5160 10 SSEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLL 80 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~ 80 (203)
-+++|+||+|++||+. +.|++++++++|+.||+++|+++++|||+|+||||+++|.++|..|+.+++++++
T Consensus 173 grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l 252 (431)
T PLN03230 173 GSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNL 252 (431)
T ss_pred EEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHH
Confidence 3689999999999973 4699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHH
Q psy5160 81 YAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAA 160 (203)
Q Consensus 81 ~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~ 160 (203)
.++++.+||+|+||+|++.+|+++.++ .+|+++||+++.+++++||+++.|+|++....++.++. +..+|.++
T Consensus 253 ~ams~l~VPiISVViGeGgSGGAlalg----~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAea---lkitA~dL 325 (431)
T PLN03230 253 REMFGLRVPIIATVIGEGGSGGALAIG----CGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEA---LRITAAEL 325 (431)
T ss_pred HHHhcCCCCEEEEEeCCCCcHHHHHhh----cCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHH---cCCCHHHH
Confidence 999999999999999998666555554 58999999999999999999999999987665555542 34789999
Q ss_pred HHcCCcceecC-C-----c-------chHHHHHHHHHHhhc
Q psy5160 161 AKKGYIDDIIE-P-----R-------TTRMRIAQDLKFLLN 188 (203)
Q Consensus 161 ~~~G~iD~Vi~-p-----~-------~tR~~l~~~L~~l~~ 188 (203)
++.|+||+||+ | . .+++.|.+.|..|..
T Consensus 326 ~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~ 366 (431)
T PLN03230 326 VKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMK 366 (431)
T ss_pred HhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999 4 1 245566777766643
No 12
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=5.7e-34 Score=245.66 Aligned_cols=163 Identities=21% Similarity=0.202 Sum_probs=141.4
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHH---HHhC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA---YAES 86 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a---~~~~ 86 (203)
+|||++|+|++||++ +||+++...++|++|++++|+++++|||+|+|++|+++ +|....+.++++.+.+ ++++
T Consensus 117 ~I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarm---qEgi~sL~~~ak~~~a~~~~~~a 193 (292)
T PRK05654 117 TIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARM---QEGLLSLMQMAKTSAALKRLSEA 193 (292)
T ss_pred EECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcch---hhhhhHHHhHHHHHHHHHHHHcC
Confidence 699999999999999 99999999999999999999999999999999999974 5654445566775544 5678
Q ss_pred CCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCc
Q psy5160 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYI 166 (203)
Q Consensus 87 ~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~i 166 (203)
+||+|+|++|+|+||+.+.++ +.+|+++|||+|+|+++||+++...+. +++++.++++..++++|+|
T Consensus 194 ~vP~IsVv~gpt~GG~aas~a---~~~D~iia~p~A~ig~aGprvie~~~~----------e~lpe~~~~ae~~~~~G~v 260 (292)
T PRK05654 194 GLPYISVLTDPTTGGVSASFA---MLGDIIIAEPKALIGFAGPRVIEQTVR----------EKLPEGFQRAEFLLEHGAI 260 (292)
T ss_pred CCCEEEEEeCCCchHHHHHHH---HcCCEEEEecCcEEEecCHHHHHhhhh----------hhhhhhhcCHHHHHhCCCC
Confidence 999999999999999777664 379999999999999999998876552 2234457889999999999
Q ss_pred ceecCCcchHHHHHHHHHHhhcC
Q psy5160 167 DDIIEPRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 167 D~Vi~p~~tR~~l~~~L~~l~~~ 189 (203)
|.||+|.|||++|.+.|+++..+
T Consensus 261 D~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 261 DMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred cEEECHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998655
No 13
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=1.3e-33 Score=242.58 Aligned_cols=163 Identities=23% Similarity=0.193 Sum_probs=142.8
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH---HHHhC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY---AYAES 86 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~---a~~~~ 86 (203)
+|||++|+|+++|++ +||+++...++|++|++++|.++++|||+|+||+|+++ +|....+.++++.+. .++++
T Consensus 116 ~I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRm---qEg~~sL~~~ak~~~~~~~~~~~ 192 (285)
T TIGR00515 116 TLYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARM---QEALLSLMQMAKTSAALAKMSER 192 (285)
T ss_pred EECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCccc---ccchhHHHhHHHHHHHHHHHHcC
Confidence 699999999999999 99999999999999999999999999999999999985 676667777787544 45678
Q ss_pred CCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCc
Q psy5160 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYI 166 (203)
Q Consensus 87 ~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~i 166 (203)
++|+|+|++|+|+||+.+.++ +.+|+++|||+|.|+++||+++...+. +++++.+++++.++++|+|
T Consensus 193 ~vP~IsVv~gpt~GG~aas~a---~~~D~iia~p~A~ig~aGprVie~ti~----------e~lpe~~q~ae~~~~~G~v 259 (285)
T TIGR00515 193 GLPYISVLTDPTTGGVSASFA---MLGDLNIAEPKALIGFAGPRVIEQTVR----------EKLPEGFQTSEFLLEHGAI 259 (285)
T ss_pred CCCEEEEEeCCcchHHHHHHH---hCCCEEEEECCeEEEcCCHHHHHHHhc----------CccchhcCCHHHHHhCCCC
Confidence 999999999999999777663 379999999999999999998766542 2244567899999999999
Q ss_pred ceecCCcchHHHHHHHHHHhhcC
Q psy5160 167 DDIIEPRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 167 D~Vi~p~~tR~~l~~~L~~l~~~ 189 (203)
|.||+|.++|++|.+.|+++.++
T Consensus 260 D~iv~~~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 260 DMIVHRPEMKKTLASLLAKLQNL 282 (285)
T ss_pred cEEECcHHHHHHHHHHHHHHhhC
Confidence 99999999999999999987654
No 14
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=4.3e-33 Score=259.56 Aligned_cols=170 Identities=19% Similarity=0.228 Sum_probs=151.3
Q ss_pred eeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY 81 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~ 81 (203)
++|||||+|++||++ ++|++++.+++|+.||+++|+++++|||+|+||||+++|.++|..|+.+++++++.
T Consensus 195 RIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~ 274 (762)
T PLN03229 195 TIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLR 274 (762)
T ss_pred EECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHH
Confidence 689999999999983 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA 161 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~ 161 (203)
+++..+||+|+||+|+|+||++++++ .+|+++||+++.++++||++++.|+|++.....+.++. +..++.++.
T Consensus 275 amasl~VP~ISVViGeggSGGAlA~g----~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~---lkiTa~dL~ 347 (762)
T PLN03229 275 TMFGLKVPIVSIVIGEGGSGGALAIG----CANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEK---LRITAQELC 347 (762)
T ss_pred HHhCCCCCEEEEEeCCcchHHHHHhh----cCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHH---cCCCHHHHH
Confidence 99999999999999999988888886 69999999999999999999999999987766665553 346899999
Q ss_pred HcCCcceecC-C-----c-------chHHHHHHHHHHhh
Q psy5160 162 KKGYIDDIIE-P-----R-------TTRMRIAQDLKFLL 187 (203)
Q Consensus 162 ~~G~iD~Vi~-p-----~-------~tR~~l~~~L~~l~ 187 (203)
+.|+||+||+ | . .++..|.+.|..|.
T Consensus 348 ~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~ 386 (762)
T PLN03229 348 RLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELG 386 (762)
T ss_pred hCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 4 1 24556666666554
No 15
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.95 E-value=1.8e-27 Score=204.40 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=137.2
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHH---HHH-HHh
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKL---LYA-YAE 85 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~---~~a-~~~ 85 (203)
+|||++|.|+++|++ +||+++...++|+.|++++|.+.++|+|.|.||+|+|+ +|..-.+..+++. +.. ..+
T Consensus 129 ~I~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARm---QEg~~sL~qmak~saa~~~~~~~ 205 (296)
T CHL00174 129 QLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARM---QEGSLSLMQMAKISSALYDYQSN 205 (296)
T ss_pred EECCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccc---cccchhhhhhHHHHHHHHHHHHc
Confidence 799999999999999 99999999999999999999999999999999999997 4443334445555 232 236
Q ss_pred CCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCC
Q psy5160 86 STVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGY 165 (203)
Q Consensus 86 ~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~ 165 (203)
+.+|+|+|++|+|+||.++..+ +.+|+++|.|++.|++.||+++...+. +++++.++++..+.++|.
T Consensus 206 ~~vP~Isvl~gPt~GG~aas~a---~l~Diiiae~~A~IgfAGPrVIe~t~g----------e~lpe~fq~ae~l~~~G~ 272 (296)
T CHL00174 206 KKLFYISILTSPTTGGVTASFG---MLGDIIIAEPNAYIAFAGKRVIEQTLN----------KTVPEGSQAAEYLFDKGL 272 (296)
T ss_pred CCCCEEEEEcCCCchHHHHHHH---HcccEEEEeCCeEEEeeCHHHHHHhcC----------CcCCcccccHHHHHhCcC
Confidence 8899999999999999888764 269999999999999999999987652 124456788999999999
Q ss_pred cceecCCcchHHHHHHHHHHh
Q psy5160 166 IDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 166 iD~Vi~p~~tR~~l~~~L~~l 186 (203)
||.|+++.++|+.|.+.|+++
T Consensus 273 vD~iV~r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 273 FDLIVPRNLLKGVLSELFQLH 293 (296)
T ss_pred ceEEEcHHHHHHHHHHHHHhh
Confidence 999999999999999999876
No 16
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=99.95 E-value=6.2e-28 Score=204.30 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=148.4
Q ss_pred eeeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHH
Q psy5160 10 SSEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLL 80 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~ 80 (203)
-.++|+||.|+.++.. +=|...+++.+|+.|++++|++|++|||+|+||+|+.+|..+|..|+..++++.+
T Consensus 102 ar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL 181 (317)
T COG0825 102 ARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNL 181 (317)
T ss_pred eeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHH
Confidence 3689999999999854 4478889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEcCCC-chhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHH
Q psy5160 81 YAYAESTVPKITVITRKA-YGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVA 159 (203)
Q Consensus 81 ~a~~~~~vP~isvv~g~~-~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~ 159 (203)
..++...||+|++|+|.. .|||.... -+|.|+|.+++.++|++||+++.|+|++.....+.++. ..-++.+
T Consensus 182 ~em~~LkvPiI~iVIGEGgSGGALAi~-----vad~V~mle~s~ySVisPEG~AsILWkD~~ka~eAAe~---mkita~d 253 (317)
T COG0825 182 REMARLKVPIISIVIGEGGSGGALAIG-----VADRVLMLENSTYSVISPEGCASILWKDASKAKEAAEA---MKITAHD 253 (317)
T ss_pred HHHhCCCCCEEEEEecCCCchhhHHhh-----HHHHHHHHHhceeeecChhhhhhhhhcChhhhHHHHHH---cCCCHHH
Confidence 999999999999999965 45555544 58999999999999999999999999997666665553 3467889
Q ss_pred HHHcCCcceecCC-------------cchHHHHHHHHHHhhcCC
Q psy5160 160 AAKKGYIDDIIEP-------------RTTRMRIAQDLKFLLNKK 190 (203)
Q Consensus 160 ~~~~G~iD~Vi~p-------------~~tR~~l~~~L~~l~~~~ 190 (203)
+.+.|.||.||++ ..+++.|.+.|..|....
T Consensus 254 Lk~lgiID~II~Ep~ggAhr~~~~~a~~l~~~l~~~l~~L~~l~ 297 (317)
T COG0825 254 LKELGIIDGIIPEPLGGAHRDPEAAAEALKNALLKELHELDKLP 297 (317)
T ss_pred HHhCCCcceeccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999995 135666777776766543
No 17
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.93 E-value=4.9e-25 Score=204.80 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=135.1
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHH---HHhC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA---YAES 86 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a---~~~~ 86 (203)
+||||+|+|++||++ +||++++.+++|+.|++++|.++++|||+|+||+|+++..+.|.......++++++. ++..
T Consensus 125 ~V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~ 204 (569)
T PLN02820 125 PVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSA 204 (569)
T ss_pred EECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCC
Confidence 799999999999999 999999999999999999999999999999999999986555554444455666665 3456
Q ss_pred CCCEEEEEcCCCchhhhhhhhccCCCcceEEecC-CCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHH-HcC
Q psy5160 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWP-TAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAA-KKG 164 (203)
Q Consensus 87 ~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~-~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~-~~G 164 (203)
+||+|++|+|+|+||++|.++ .+|+++|.+ ++.++++||+++..++- ++.+. +++..+..+. .+|
T Consensus 205 ~VP~Isvv~G~~~gGgAy~~a----~~D~vim~~~~a~i~~aGP~vV~~~~G-e~v~~--------eeLGGa~~h~~~sG 271 (569)
T PLN02820 205 GIPQIALVLGSCTAGGAYVPA----MADESVIVKGNGTIFLAGPPLVKAATG-EEVSA--------EDLGGADVHCKVSG 271 (569)
T ss_pred CCCEEEEEeCCCChHHHHHHH----hCCceEEecCCcEEEecCHHHHHhhcC-cccCH--------HHhCCHHHhccccc
Confidence 899999999999999888886 689988865 69999999998877652 22222 2345564444 699
Q ss_pred CcceecC-CcchHHHHHHHHHHhhcCC
Q psy5160 165 YIDDIIE-PRTTRMRIAQDLKFLLNKK 190 (203)
Q Consensus 165 ~iD~Vi~-p~~tR~~l~~~L~~l~~~~ 190 (203)
.+|.+.+ ..+.-..+++.|++|+.+.
T Consensus 272 v~d~~~~de~~a~~~~R~lls~Lp~~~ 298 (569)
T PLN02820 272 VSDHFAQDELHALAIGRNIVKNLHLAA 298 (569)
T ss_pred ccccccCchHHHHHHHHHHHHhcCcCC
Confidence 9999988 5567678899999998765
No 18
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.92 E-value=4.3e-24 Score=182.48 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=128.3
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHh-----CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDA-----FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYA 84 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~-----~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~ 84 (203)
+|||+||.|+++|++ +||++++.+++|+.|++++|.+ .++|+|+|+||+|.++. |..-.+..+++.++++.
T Consensus 55 ~I~Gr~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlq---Eg~~~L~~~a~i~~~~~ 131 (274)
T TIGR03133 55 TIDGKPVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQ---EANAGLIAIAEIMRAIL 131 (274)
T ss_pred EECCEEEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChh---hhHHHHHHHHHHHHHHH
Confidence 699999999999999 9999999999999999999987 67899999999999984 33223345567666544
Q ss_pred --hCCCCEEEEEcCC--CchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHH
Q psy5160 85 --ESTVPKITVITRK--AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAA 160 (203)
Q Consensus 85 --~~~vP~isvv~g~--~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~ 160 (203)
+..||+|++|+|+ |+||+++.++ .+|+++|.+++.+++.||+++....-.++.+.+|+.=-. +.+..+ +.
T Consensus 132 ~ls~~vP~Isvv~Gp~gc~GG~a~~a~----l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~-~~lGG~-~~ 205 (274)
T TIGR03133 132 DARAAVPVIGVIGGRVGCFGGMGIAAG----LCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVW-RTTGGK-HR 205 (274)
T ss_pred HHhCCCCEEEEEeCCCCcchHHHHHHh----cCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccc-cccchH-hH
Confidence 3349999999999 8999887776 799999999999999999999886533333333211000 123334 45
Q ss_pred HHcCCcceecCC--cchHHHHHHHHHH
Q psy5160 161 AKKGYIDDIIEP--RTTRMRIAQDLKF 185 (203)
Q Consensus 161 ~~~G~iD~Vi~p--~~tR~~l~~~L~~ 185 (203)
..+|.+|.+++. +..|+.+.++|..
T Consensus 206 ~~sG~~D~~v~dd~~a~~~~~~~~l~~ 232 (274)
T TIGR03133 206 FLSGDADVLVEDDVDAFRAAVIAALAL 232 (274)
T ss_pred hhcccceEEeCCHHHHHHHHHHHHHhc
Confidence 569999999995 4577777777764
No 19
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.92 E-value=2.2e-24 Score=181.52 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=144.5
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHH---HHHhC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLY---AYAES 86 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~---a~~~~ 86 (203)
+|+|.||.+.+.|+. +|||+|...++|++|+++.|.+.++|+|.+.-|+|+|+ ||..-.+-++++.-. .+.++
T Consensus 118 ~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARM---QEg~lSLMQMaktsaAl~~l~ea 194 (294)
T COG0777 118 TINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARM---QEGILSLMQMAKTSAALKRLSEA 194 (294)
T ss_pred EECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhH---hHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999 99999999999999999999999999999999999995 665555666666544 45689
Q ss_pred CCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCc
Q psy5160 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYI 166 (203)
Q Consensus 87 ~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~i 166 (203)
..|.|+|++.|++||..+.++ +..|+++|.|+|.||+.||+++.+.+. +.+++.++++.++.++|.|
T Consensus 195 ~lpyIsVLt~PTtGGVsASfA---~lGDi~iAEP~AlIGFAGpRVIEQTir----------e~LPegfQ~aEfLlehG~i 261 (294)
T COG0777 195 GLPYISVLTDPTTGGVSASFA---MLGDIIIAEPGALIGFAGPRVIEQTIR----------EKLPEGFQTAEFLLEHGMI 261 (294)
T ss_pred CCceEEEecCCCccchhHhHH---hccCeeecCcccccccCcchhhhhhhc----------ccCCcchhhHHHHHHcCCc
Confidence 999999999999999555543 279999999999999999999877652 3356778899999999999
Q ss_pred ceecCCcchHHHHHHHHHHhhcCCCCC
Q psy5160 167 DDIIEPRTTRMRIAQDLKFLLNKKQDN 193 (203)
Q Consensus 167 D~Vi~p~~tR~~l~~~L~~l~~~~~~~ 193 (203)
|.|++..|.|+.|...|..+...+...
T Consensus 262 D~iv~R~elr~tla~ll~~~~~~~~~~ 288 (294)
T COG0777 262 DMIVHRDELRTTLASLLAKLTPQPAPC 288 (294)
T ss_pred eeeecHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999887665543
No 20
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.91 E-value=6.2e-24 Score=196.03 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=137.8
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHH--HhCC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAY--AEST 87 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~--~~~~ 87 (203)
+||||+|.|+++|++ +||+++..+++|+.|++++|.+.++|+|+|+||+|.++.+..+ .+..+++.+... .+..
T Consensus 78 ~v~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~---~l~~~~~~~~~~~~~s~~ 154 (512)
T TIGR01117 78 TIDGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVD---ALKGYGDIFYRNTIASGV 154 (512)
T ss_pred EECCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccch---hhhhHHHHHHHHHHHcCC
Confidence 799999999999999 9999999999999999999999999999999999999843322 233345555433 4578
Q ss_pred CCEEEEEcCCCchhhhhhhhccCCCcceEEecCC-CeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHH-HHcCC
Q psy5160 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT-AEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAA-AKKGY 165 (203)
Q Consensus 88 vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~-a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~-~~~G~ 165 (203)
+|+|++|+|+|+||+++..+ .+|+++|.++ +.+++.||+++...+- ++.+. ++++.+..+ ..+|.
T Consensus 155 iP~Isvv~G~~~GG~a~~~a----l~D~vim~~~~a~i~~aGP~vv~~~~G-e~v~~--------e~lGGa~~h~~~sGv 221 (512)
T TIGR01117 155 VPQISAIMGPCAGGAVYSPA----LTDFIYMVDNTSQMFITGPQVIKTVTG-EEVTA--------EQLGGAMAHNSVSGV 221 (512)
T ss_pred CcEEEEEecCCCcHHHHHHH----hcCceEEeccceEEEecChHHHHhhcC-cccch--------hhcchHHHhccccce
Confidence 99999999999999888876 7999999997 5799999999877652 22222 234555444 46999
Q ss_pred cceecC-CcchHHHHHHHHHHhhcCCCCCCC
Q psy5160 166 IDDIIE-PRTTRMRIAQDLKFLLNKKQDNPY 195 (203)
Q Consensus 166 iD~Vi~-p~~tR~~l~~~L~~l~~~~~~~p~ 195 (203)
+|.+.+ +.+....+.++|++++++..+.||
T Consensus 222 ~d~~~~de~ea~~~~r~~ls~lp~~~~~~~p 252 (512)
T TIGR01117 222 AHFIAEDDDDCIMLIRRLLSFLPSNNMEKAP 252 (512)
T ss_pred eEEecCChHHHHHHHHHHHHhCCcCCCCCCC
Confidence 999998 788999999999999988765544
No 21
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.91 E-value=2.6e-23 Score=179.53 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=119.9
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCC-----CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFN-----IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYA 84 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~-----lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~ 84 (203)
+|||+||.|+++|++ +||++++.+++|+.|++++|.+.+ +|+|+|+||+|.+++ |....+..+++.++++.
T Consensus 64 ~I~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlq---Eg~~~L~~~a~i~~~~~ 140 (301)
T PRK07189 64 TLDGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQ---EANAGLAAIAEIMRAIV 140 (301)
T ss_pred EECCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCcc---chHHHHHHHHHHHHHHH
Confidence 699999999999999 999999999999999999999999 999999999999985 33333445567776653
Q ss_pred --hCCCCEEEEEcCC--CchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHH
Q psy5160 85 --ESTVPKITVITRK--AYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAA 160 (203)
Q Consensus 85 --~~~vP~isvv~g~--~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~ 160 (203)
+..||+|+||.|+ |+||+.+.++ .+|+++|++++++++.||+++....-.++.+.+|+.--. +.++.+ +.
T Consensus 141 ~ls~~VP~I~vv~G~~gc~GG~a~~a~----l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw-~~lGG~-h~ 214 (301)
T PRK07189 141 DLRAAVPVIGLIGGRVGCFGGMGIAAA----LCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVW-RTTGGK-HR 214 (301)
T ss_pred HHhCCCCEEEEEcCCCCCcHHHHHHHh----cCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccc-cccCcc-ee
Confidence 3449999999999 9999888776 799999999999999999998876532333333221001 112333 34
Q ss_pred HHcCCcceecCC
Q psy5160 161 AKKGYIDDIIEP 172 (203)
Q Consensus 161 ~~~G~iD~Vi~p 172 (203)
..+|.+|.+++-
T Consensus 215 ~~sG~~D~~v~d 226 (301)
T PRK07189 215 YLSGLADALVDD 226 (301)
T ss_pred eecccceEEeCC
Confidence 449999999984
No 22
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.90 E-value=1.3e-23 Score=191.82 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=142.6
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHH--HhCC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAY--AEST 87 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~--~~~~ 87 (203)
+||||+|.|+|||+| +||++++..++|+.|+.++|.+.++|+|.|.|++|++++++.+ .++..++.|+.. .++.
T Consensus 87 ~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~---~l~g~g~iF~~~a~~Sg~ 163 (526)
T COG4799 87 TINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVP---SLAGYGRIFYRNARASGV 163 (526)
T ss_pred eeCCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCcc---ccccchHHHHHHHHhccC
Confidence 799999999999999 9999999999999999999999999999999999999976643 334456777654 3567
Q ss_pred CCEEEEEcCCCchhhhhhhhccCCCcceEEecCC-CeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHH-cCC
Q psy5160 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT-AEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAK-KGY 165 (203)
Q Consensus 88 vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~-a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~-~G~ 165 (203)
||+|++|+|+|.||+.|.+. ++||++|.++ +.+++.||+.+..++ .++... ++++.+.-+.+ +|.
T Consensus 164 IPqIsvv~G~c~gGgaY~pa----l~D~~imv~~~~~mfltGP~~ik~vt-Ge~V~~--------e~LGGa~vh~~~sGv 230 (526)
T COG4799 164 IPQISVVMGPCAGGGAYSPA----LTDFVIMVRDQSYMFLTGPPVIKAVT-GEEVSA--------EELGGAQVHARKSGV 230 (526)
T ss_pred CCEEEEEEecCccccccccc----ccceEEEEcCCccEEeeCHHHHHhhc-CcEeeh--------hhccchhhhcccccc
Confidence 99999999999999999987 7999999998 899999999887765 222221 23455555555 599
Q ss_pred cceecC-CcchHHHHHHHHHHhhcCCCCCCCC
Q psy5160 166 IDDIIE-PRTTRMRIAQDLKFLLNKKQDNPYK 196 (203)
Q Consensus 166 iD~Vi~-p~~tR~~l~~~L~~l~~~~~~~p~~ 196 (203)
+|-+.+ ..+..+.+.++|++|+.+..+.+|.
T Consensus 231 a~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~ 262 (526)
T COG4799 231 ADLLAEDDEDAIELVRRLLSYLPSNNREPPPV 262 (526)
T ss_pred eeeeecCHHHHHHHHHHHHHhcCccCCCCCCc
Confidence 999999 6789999999999999988776664
No 23
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.90 E-value=6.6e-23 Score=188.77 Aligned_cols=166 Identities=21% Similarity=0.215 Sum_probs=135.1
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHH--hCC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYA--EST 87 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~--~~~ 87 (203)
+|+|++|.|+++|++ +||++++.+++|+.|++++|.+.++|+|.|.||+|. .+..+|....+..+++.+..+. +..
T Consensus 53 ~I~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa-~~r~~eg~~~l~~~g~i~~~~~~~~~~ 131 (493)
T PF01039_consen 53 KINGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGA-FLRMQEGVESLMGMGRIFRAIARLSGG 131 (493)
T ss_dssp EETTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSB-CGGGGGHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeCCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEecccccc-ccccchhhhhhhhhHHHHHHHHHHhcC
Confidence 799999999999999 999999999999999999999999999999999999 2234565555666777776643 459
Q ss_pred CCEEEEEcCCCchhhhhhhhccCCCcceEEecCC-CeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCc
Q psy5160 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT-AEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYI 166 (203)
Q Consensus 88 vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~-a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~i 166 (203)
+|+|++++|+|+||++|.+. .+|+++|+++ +.+++.||+++...+. ++.+.++ ......+...+|.+
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~----~~d~~i~~~~~a~i~l~GP~vv~~~~G-e~~~~~~-------lgG~~~h~~~sG~~ 199 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAA----LSDFVIMVKGTARIFLAGPRVVESATG-EEVDSEE-------LGGADVHAAKSGVV 199 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHH----HSSEEEEETTTCEEESSTHHHHHHHHS-SCTSHHH-------HHBHHHHHHTSSSS
T ss_pred CCeEEEEccccccchhhccc----ccCccccCccceEEEeccccccccccC-ccccchh-------hhhhhhhcccCCCc
Confidence 99999999999998777765 6999999998 9999999999887764 3333221 22333556789999
Q ss_pred ceecC-CcchHHHHHHHHHHhhcC
Q psy5160 167 DDIIE-PRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 167 D~Vi~-p~~tR~~l~~~L~~l~~~ 189 (203)
|.+.+ +.++.+.+.+.|++++..
T Consensus 200 d~v~~de~~a~~~ir~~ls~lp~~ 223 (493)
T PF01039_consen 200 DYVVDDEEDALAQIRRLLSYLPSP 223 (493)
T ss_dssp SEEESSHHHHHHHHHHHHHTS-SS
T ss_pred eEEEechHHHHHHHHHhhcccccc
Confidence 99998 567889999999999933
No 24
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.85 E-value=2.8e-20 Score=154.77 Aligned_cols=169 Identities=24% Similarity=0.257 Sum_probs=141.4
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHH--HHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHH---hCC
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIR--FCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYA---EST 87 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~--~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~---~~~ 87 (203)
+++.+.||.+... |.+|.+.+.++++.+. +....+.|||.++||+|+.+|..+|..|+.++++.+..++. ..+
T Consensus 28 ~~~~iaVvg~~~~--~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~G 105 (234)
T PF06833_consen 28 DGRFIAVVGDANH--GEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAG 105 (234)
T ss_pred CCcEEEEEecCCC--CcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 7799999998875 9999999999999995 55678999999999999999999999999999998888775 578
Q ss_pred CCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCcc
Q psy5160 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYID 167 (203)
Q Consensus 88 vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~iD 167 (203)
+|+|++|+|++.+|+|.+. +|.+|.++|.|++++.+|+.+++++|+.+..++.+|+.+..+-.--+..+..+.|.+|
T Consensus 106 HpvI~Lv~G~A~SGaFLA~---GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~ 182 (234)
T PF06833_consen 106 HPVIGLVYGKAMSGAFLAH---GLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALD 182 (234)
T ss_pred CCeEEEEecccccHHHHHH---HHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHH
Confidence 9999999999999999998 4689999999999999999999999998776555555554332223456889999999
Q ss_pred eecC---CcchHHHHHHHHHHh
Q psy5160 168 DIIE---PRTTRMRIAQDLKFL 186 (203)
Q Consensus 168 ~Vi~---p~~tR~~l~~~L~~l 186 (203)
++++ +....+.+...+...
T Consensus 183 ~l~~~~~~~~~~~~~~~~v~~~ 204 (234)
T PF06833_consen 183 ELWDGDLADQPAEALAAQVQEA 204 (234)
T ss_pred HHhcccccccccHHHHHHHHHH
Confidence 9999 344555555555543
No 25
>KOG0540|consensus
Probab=99.61 E-value=9.7e-16 Score=136.60 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=109.0
Q ss_pred eeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHH---HHhC
Q psy5160 11 SEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA---YAES 86 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a---~~~~ 86 (203)
-|+||.|.+++||++ +||+..+-+++|..|..+.|+..++|.|+|+||+|.++..+.|..---.+.++.|+. +++.
T Consensus 108 ~i~gr~~~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~ 187 (536)
T KOG0540|consen 108 RINGRKCFVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSYHFGRIFYNQNVMSSG 187 (536)
T ss_pred cccceEEEEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChhhhheeeeecceeccC
Confidence 378899999999999 999999999999999999999999999999999999998888865555667888773 5688
Q ss_pred CCCEEEEEcCCCchhhhhhhhccCCCcceEEecCC-CeeeeeCHHHHHHHH
Q psy5160 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT-AEIAVMGSKGAVAIL 136 (203)
Q Consensus 87 ~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~-a~i~v~gp~~~~~i~ 136 (203)
.+|+|++|+|.|.+|+.|.++ ++|+.++..+ +.++..||..+....
T Consensus 188 ~ipqis~Img~Ct~gg~y~pA----m~d~~~~vk~~s~lfl~gp~lVka~t 234 (536)
T KOG0540|consen 188 NIPQISVIMGSCTAGGAYVPA----MADETIMVKDTSTLFLAGPPLVKAAT 234 (536)
T ss_pred CCCceeEEEecccCCceeccc----ccceeEEecCcceEEecCCchhhhhc
Confidence 999999999999999999987 7999999875 899999999876553
No 26
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.05 E-value=4e-09 Score=85.78 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=90.0
Q ss_pred cccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEc---CCCchhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVIT---RKAYGGAY 103 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~---g~~~Gga~ 103 (203)
|.|+...+..+.+.++.|.+.+ -+|+..+||||..+.... .++..+.....|+|+.+. |.|+||++
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~----------~i~~~l~~~~kPvia~v~~~~G~AasgG~ 77 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR----------EIVQAILASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH----------HHHHHHHhCCCCEEEEEecCCCCchhHHH
Confidence 6688888888999998777665 567888899997643222 334445567899999998 99999888
Q ss_pred hhhhccCCCcceEEecCCCeeeeeCHHHH---------------------H-HHHhcCchhhhhhHHH--HhhhcCCHHH
Q psy5160 104 AVMSEKNLRSDVNYAWPTAEIAVMGSKGA---------------------V-AILYRKEKDKSNYEVE--YNDKFRSPVA 159 (203)
Q Consensus 104 ~~~~~~~~~~d~~~a~~~a~i~v~gp~~~---------------------~-~i~~~~~~~~~e~~~~--~~~~~~~~~~ 159 (203)
+... .||+++|.|+++++..+|... . .+..+... ..+.+++ +..+.-++..
T Consensus 78 ~ial----a~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~a~~~l~~g~~~~a~e 152 (187)
T cd07020 78 YILL----AAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGR-NAEWAEKAVRESLSLTAEE 152 (187)
T ss_pred HHHH----hCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHcCCeecHHH
Confidence 7775 699999999999998666411 0 01111000 0012222 1123346788
Q ss_pred HHHcCCcceecCCc
Q psy5160 160 AAKKGYIDDIIEPR 173 (203)
Q Consensus 160 ~~~~G~iD~Vi~p~ 173 (203)
+.+.|++|+|+++.
T Consensus 153 A~~~Glvd~v~~~~ 166 (187)
T cd07020 153 ALKLGVIDLIAADL 166 (187)
T ss_pred HHHcCCcccccCCH
Confidence 99999999999875
No 27
>KOG0368|consensus
Probab=98.87 E-value=2.2e-09 Score=106.59 Aligned_cols=173 Identities=19% Similarity=0.268 Sum_probs=138.3
Q ss_pred eeCCeEEEEEEeCCC----------------------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHH
Q psy5160 11 SEKFNLIQILKLNPK----------------------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQE 68 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~----------------------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E 68 (203)
.++|.||||||.+.+ -|-.|.+++|-|-+++|.-.++.++||+.|.+.-||.-|..+.
T Consensus 1845 rLgGIPvGVIavEtrtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDM 1924 (2196)
T KOG0368|consen 1845 RLGGIPVGVIAVETRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDM 1924 (2196)
T ss_pred ecCCcceEEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHH
Confidence 578999999998642 3889999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhCCCCEEEEEc--CCCchhhhhhhhccCCCcce--EEecCCCeeeeeCHHHHHHHHhcCchh--
Q psy5160 69 HLGIIRHGSKLLYAYAESTVPKITVIT--RKAYGGAYAVMSEKNLRSDV--NYAWPTAEIAVMGSKGAVAILYRKEKD-- 142 (203)
Q Consensus 69 ~~g~~~~~a~~~~a~~~~~vP~isvv~--g~~~Gga~~~~~~~~~~~d~--~~a~~~a~i~v~gp~~~~~i~~~~~~~-- 142 (203)
-...++.++.++.+++...-|++..|- |.--||++.+ ..+.+++|+ .||-..++-+|..|++++.|.+|.+.-
T Consensus 1925 y~~VLkfGa~IVDaL~~YkQPv~vYIPp~gELRGGsWvV-vD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre~Lle 2003 (2196)
T KOG0368|consen 1925 YDQVLKFGAYIVDALRQYKQPVLVYIPPMGELRGGSWVV-VDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRREMLLE 2003 (2196)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEcCcchhhcCceEEE-EcCccCHHHHHHHhhhhhccccccCCceEEEEeeHHHHHH
Confidence 999999999999999999999998776 5555665554 567788887 456667999999999999988775410
Q ss_pred -------------------------hhhh------------------HHHHhhhcCCHHHHHHcCCcceecCCcchHHHH
Q psy5160 143 -------------------------KSNY------------------EVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRI 179 (203)
Q Consensus 143 -------------------------~~e~------------------~~~~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l 179 (203)
.+++ .-++.+...++.++...|+|..+.++.+.|..+
T Consensus 2004 ~MrR~D~~y~~L~~~l~~~~ls~~~~~~l~kqLk~Re~~L~piY~QisvqFAdlHDr~~RM~~kgVI~~~lew~~sRrff 2083 (2196)
T KOG0368|consen 2004 MMRRLDPTYIKLKSSLSEAKLSPEDRKDLQKQLKEREEQLLPIYNQISVQFADLHDRSGRMKAKGVISKVLEWTESRRFF 2083 (2196)
T ss_pred HHHhcchhhhhhhhhcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhHHHHH
Confidence 0001 112233334667889999999999999888766
Q ss_pred HHHHH
Q psy5160 180 AQDLK 184 (203)
Q Consensus 180 ~~~L~ 184 (203)
.+-|.
T Consensus 2084 ywrLr 2088 (2196)
T KOG0368|consen 2084 YWRLR 2088 (2196)
T ss_pred HHHHH
Confidence 55553
No 28
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.82 E-value=4.5e-07 Score=77.34 Aligned_cols=174 Identities=13% Similarity=0.072 Sum_probs=107.9
Q ss_pred ccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEec-------CCCCCCcHHH----HHhHHHH
Q psy5160 6 SGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFID-------VPGFLPGLAQ----EHLGIIR 74 (203)
Q Consensus 6 ~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~D-------t~G~~~g~~~----E~~g~~~ 74 (203)
+.+.+.++|.-.-|.-|+|..--+++.+....+..+++.+.+..+-+|.|.- +.|.++.... +......
T Consensus 4 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (261)
T PRK11423 4 QYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_pred cceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence 3577888876666666666434689999999999999877665566566642 2233432211 1111223
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-H-HHHHHhcCchhhhhh
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-G-AVAILYRKEKDKSNY 146 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~-~~~i~~~~~~~~~e~ 146 (203)
...+++..+.....|+|+.|-|.|+||++.... .+|+++|.+++.+++.. |. + ...+..+ -....
T Consensus 84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~---vg~~~ 156 (261)
T PRK11423 84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIM----SCDLIIAASTSTFAMTPANLGVPYNLSGILNFTND---AGFHI 156 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEecEEechHHHHHH----hCCEEEecCCCEecCchhhcCCCCCccHHHHHHHH---hHHHH
Confidence 334566677789999999999999998876664 69999999988765411 11 1 1111110 01112
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.++ ..+.-++..+.+.|+||.|++++++.+...+..+.+
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 198 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHI 198 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHH
Confidence 2221 222346778999999999999877655544444443
No 29
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.81 E-value=5.5e-07 Score=76.98 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=107.0
Q ss_pred CccccccceeeeCCeEEEEEEeC-CCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH-----
Q psy5160 1 MSAYKSGLQSSEKFNLIQILKLN-PKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE----- 68 (203)
Q Consensus 1 ~~~~~~~~~~~i~Gr~V~vva~d-~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E----- 68 (203)
|+.|.. +..+.+...|+.+--| |..--+++.+..+.+.++++.+++ ..+=+|.|.-.+ |.++....+
T Consensus 1 ~~~~~~-l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 79 (265)
T PRK05674 1 MSDFQT-IELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLD 79 (265)
T ss_pred CCCcce-EEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhccccc
Confidence 566665 7777753346555444 433457999999999999987654 344555553322 333321110
Q ss_pred ---HhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee------eCHHHHHHHHhcC
Q psy5160 69 ---HLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV------MGSKGAVAILYRK 139 (203)
Q Consensus 69 ---~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v------~gp~~~~~i~~~~ 139 (203)
.....+.+.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++ +.|......+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~ 155 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLIS----CCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKA 155 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhh----hcCEEEEeCCCEEeCcccccCCCcchhHHHHHHH
Confidence 000112334566677789999999999999998877765 699999998877654 1122221111110
Q ss_pred chhhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 140 EKDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 140 ~~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
. ....+.++ .-+.-++..+.+.|+||+|++++++.+...+..+.+
T Consensus 156 -v-G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 202 (265)
T PRK05674 156 -I-GERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANL 202 (265)
T ss_pred -h-CHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHH
Confidence 0 11112222 122246778999999999999877666555555444
No 30
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.78 E-value=3e-07 Score=73.89 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHHh-CCC-cEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhc
Q psy5160 31 DINAAVKSARFIRFCDA-FNI-PIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSE 108 (203)
Q Consensus 31 ~~~~~~K~~r~i~~a~~-~~l-Plv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~ 108 (203)
+..+...+.+.++.+.+ .++ -||.-.|++|..+... +.+.+++..+.+...|+|+.+-|.|.|++++...
T Consensus 20 ~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~-------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~- 91 (177)
T cd07014 20 GNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVASGGGNAASGGYWIST- 91 (177)
T ss_pred CCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHH-
Confidence 33455677777765544 444 4566678888754321 2344566667778999999999999999988876
Q ss_pred cCCCcceEEecCCCeeeeeCHHHHHHH----Hh------------cCchhhhhhHHHHhh-hcCCHHHHHHcCCcceecC
Q psy5160 109 KNLRSDVNYAWPTAEIAVMGSKGAVAI----LY------------RKEKDKSNYEVEYND-KFRSPVAAAKKGYIDDIIE 171 (203)
Q Consensus 109 ~~~~~d~~~a~~~a~i~v~gp~~~~~i----~~------------~~~~~~~e~~~~~~~-~~~~~~~~~~~G~iD~Vi~ 171 (203)
.||+++|.|++.++..|....... +. ......+...+.+.+ ..-++..+.+.|+||+|..
T Consensus 92 ---a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~ 168 (177)
T cd07014 92 ---PANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS 168 (177)
T ss_pred ---hCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC
Confidence 699999999999999887433221 11 000111111121211 1246789999999999999
Q ss_pred CcchHHHH
Q psy5160 172 PRTTRMRI 179 (203)
Q Consensus 172 p~~tR~~l 179 (203)
+.++.+.|
T Consensus 169 ~~e~~~~l 176 (177)
T cd07014 169 FDDAVAKL 176 (177)
T ss_pred HHHHHHHh
Confidence 88776654
No 31
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=1.5e-06 Score=74.15 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=107.5
Q ss_pred cccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCcHHH-----H-HhH
Q psy5160 5 KSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP------GFLPGLAQ-----E-HLG 71 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~------G~~~g~~~-----E-~~g 71 (203)
.+.+.++++|.-.-|--|+|..-.+++....+.+..+++.+.+ ..+-+|.|.=++ |.++.... + ...
T Consensus 7 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 86 (262)
T PRK06144 7 TDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVA 86 (262)
T ss_pred CCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHH
Confidence 3457778888544445555544468999999999999976654 456666665322 23332110 0 011
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH--------H-HHHHHhcCchh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK--------G-AVAILYRKEKD 142 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~--------~-~~~i~~~~~~~ 142 (203)
..+.+.+++..+.....|+|+.|-|.|+||++.... .+|+++|.+++.++.-... + ...+...-
T Consensus 87 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~v--- 159 (262)
T PRK06144 87 YERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA----ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALL--- 159 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHH----hCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHh---
Confidence 122344566667788999999999999998877765 6999999999888752211 0 11111110
Q ss_pred hhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 143 KSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 143 ~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
....+.++ ..+.-++..+.+.|+||+|++++++.+...+..+.+.
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~ 206 (262)
T PRK06144 160 GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLA 206 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHH
Confidence 11112221 1222467889999999999998776665555554443
No 32
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=1.7e-06 Score=73.61 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=104.4
Q ss_pred ceeeeCCeEEEEEEeC-CCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC--CCCCcHH----HH-----HhHHHH
Q psy5160 8 LQSSEKFNLIQILKLN-PKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP--GFLPGLA----QE-----HLGIIR 74 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d-~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~--G~~~g~~----~E-----~~g~~~ 74 (203)
++++...-.|+++--| |...-+++.+..+.+.++++.++. ..+-+|.|.=.+ .|--|.. .+ ......
T Consensus 8 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (256)
T PRK06143 8 AGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFIS 87 (256)
T ss_pred ceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHH
Confidence 5566433345555544 435568999999999999986654 455556554332 2333311 11 011122
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHHHHHHHhcCchhhhhhHH
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~~~~i~~~~~~~~~e~~~ 148 (203)
.+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++.. .+......+.+. -....+.
T Consensus 88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~--iG~~~a~ 161 (256)
T PRK06143 88 RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAA----ACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRL--IGWARTR 161 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHH----hCCEEEecCCCEEeCCccccCCCCccHHHHHHHh--cCHHHHH
Confidence 334556667789999999999999998777765 6999999988766531 111111111110 0111222
Q ss_pred HH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhc
Q psy5160 149 EY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~ 188 (203)
++ .-+.-++..+.+.|+||.|++++++.+...+..+.+..
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 203 (256)
T PRK06143 162 WLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAG 203 (256)
T ss_pred HHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHc
Confidence 22 12234678899999999999987776665555554443
No 33
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.76 E-value=1.2e-06 Score=74.39 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=102.5
Q ss_pred eeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCCCcHHHH-------H-hHHHHH
Q psy5160 9 QSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP-----GFLPGLAQE-------H-LGIIRH 75 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~-----G~~~g~~~E-------~-~g~~~~ 75 (203)
..+++|.-.-|.-|+|..--+++.+....+.++++.+++..+-+|.|.-.+ |.++..-.. . ......
T Consensus 2 ~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 81 (256)
T TIGR02280 2 LSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETF 81 (256)
T ss_pred eEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHH
Confidence 345566544455555543357999999999999987776555556554222 233321110 0 011112
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~ 148 (203)
...++..+....+|+|+.|-|.|+||++.... .+|++||.+++.++. ..+-+....+.+ .-....+.
T Consensus 82 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~--~vG~~~a~ 155 (256)
T TIGR02280 82 YNPLVRRLRALPLPVVCAVNGVAAGAGANLAL----ACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPR--LVGRARAM 155 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHH----hCCEEEecCCCEEeChhhhcCCCCCccHHHHHHH--HhCHHHHH
Confidence 23455667788999999999999998877765 699999999987763 111111111110 00111122
Q ss_pred HH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 149 EY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
++ .-+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 156 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 195 (256)
T TIGR02280 156 GLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHL 195 (256)
T ss_pred HHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHH
Confidence 21 122246778999999999999877666555544444
No 34
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=1.8e-06 Score=73.45 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=104.3
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCCCcHHHH-----HhHHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP-----GFLPGLAQE-----HLGIIRHG 76 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~-----G~~~g~~~E-----~~g~~~~~ 76 (203)
.+.++++|.-+-|.-|++...-+++.+..+.+.+.++.++ ..+-+|.|.-.+ |.++..... .....+.+
T Consensus 3 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRW 81 (255)
T ss_pred eEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 4566777754444445443446899999999999998776 666666665332 334332111 01112233
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC-------HHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG-------SKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g-------p~~~~~i~~~~~~~~~e~~~~ 149 (203)
.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++.-. +-+....+.+. -....+.+
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--iG~~~a~~ 155 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELAS----AAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL--IGVARMTD 155 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHH----hCCEEEEeCCCEEeccccccCCCCCccHHHHHHHH--hCHHHHHH
Confidence 4556667788999999999999998877765 69999999988776411 11111111100 01111222
Q ss_pred H--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+ .-+.-++..+.+.|+||.|++++++.+...+..+.+
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 194 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRI 194 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHH
Confidence 1 122346788999999999999876655444444333
No 35
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=1.5e-06 Score=73.88 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=104.4
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCcHHHH-----HhHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP------GFLPGLAQE-----HLGIIR 74 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~------G~~~g~~~E-----~~g~~~ 74 (203)
.++++++|.-+-|.-|+|.. -+++.+....+.++++.+++ ..+-+|.|.-.+ |.++....+ .....+
T Consensus 4 ~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (258)
T PRK09076 4 ELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMAR 82 (258)
T ss_pred EEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHH
Confidence 46777777655555555543 68999999999999986654 556666664322 223221111 011222
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhH
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYE 147 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~ 147 (203)
.+.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. . ....+
T Consensus 83 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-i-G~~~a 156 (258)
T PRK09076 83 RFGEAFEALSAFRGVSIAAINGYAMGGGLECAL----ACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWL-V-GEGWA 156 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHH----hCCEEEecCCCEeeCcccccCCCCCccHHHHHHHH-h-CHHHH
Confidence 344566667788999999999999998887765 699999999887653 2111111111110 0 11111
Q ss_pred HHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 148 VEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 148 ~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.++ .-..-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 197 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKV 197 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHH
Confidence 221 112246788999999999999876555444433333
No 36
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=1.4e-06 Score=74.28 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=103.4
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCH-HHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHHH-----------
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDI-NAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQEH----------- 69 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~-~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E~----------- 69 (203)
+.++++|.-.-|.-|++...-+++. +..+.+.++++.+++ ..+-+|.|.-. .|.++....+.
T Consensus 5 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (266)
T PRK09245 5 LLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADI 84 (266)
T ss_pred eEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhH
Confidence 6777887555555555543457874 777888888876654 55667766432 23343221110
Q ss_pred hH-HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCch
Q psy5160 70 LG-IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEK 141 (203)
Q Consensus 70 ~g-~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~ 141 (203)
.. ....+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+ .
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~--~ 158 (266)
T PRK09245 85 RQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLAC----MCDIRIASETARFAESFVKLGLIPGDGGAWLLPR--I 158 (266)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHH----hCCEEEecCCCEEcccccccCcCCCcchhhhHHH--H
Confidence 01 111233456667788999999999999998877765 699999999887663 211111111110 0
Q ss_pred hhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 142 DKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 142 ~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
-....+.++. .+.-++..+.+.|+||.|++++++.+...+..+.+.
T Consensus 159 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 206 (266)
T PRK09245 159 IGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIA 206 (266)
T ss_pred hhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 0111222221 222467889999999999998776555555444443
No 37
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.72 E-value=4.1e-07 Score=73.69 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=71.4
Q ss_pred cccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVM 106 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~ 106 (203)
|.+++.....+.|.++.|.+.+ -.|++.+||||..+.. .-.++..+.+..+|+++.|.|.|.+++++..
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~----------~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia 77 (178)
T cd07021 8 GEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDS----------ALEIVDLILNSPIPTIAYVNDRAASAGALIA 77 (178)
T ss_pred eEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHH----------HHHHHHHHHhCCCCEEEEECCchHHHHHHHH
Confidence 7788888999999998887765 6889999999986421 1234455667889999999999988776665
Q ss_pred hccCCCcceEEecCCCeeeeeCHH
Q psy5160 107 SEKNLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 107 ~~~~~~~d~~~a~~~a~i~v~gp~ 130 (203)
. .+|+++|.|++.++..+|-
T Consensus 78 ~----a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 78 L----AADEIYMAPGATIGAAEPI 97 (178)
T ss_pred H----hCCeEEECCCCeEecCeeE
Confidence 4 6999999999999987773
No 38
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=2.1e-06 Score=72.79 Aligned_cols=174 Identities=16% Similarity=0.102 Sum_probs=106.3
Q ss_pred cceeeeCCe--EEEEEEeCCC-CCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHH----HhHHH
Q psy5160 7 GLQSSEKFN--LIQILKLNPK-APGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQE----HLGII 73 (203)
Q Consensus 7 ~~~~~i~Gr--~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E----~~g~~ 73 (203)
.+.+.++|. .|.++--|.- ..-+++.+..+.+.++++..+ ...+-+|.|.-.+ |.++..... .....
T Consensus 4 ~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (251)
T PRK06023 4 HILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFG 83 (251)
T ss_pred eEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhH
Confidence 467777774 4776665533 557899999999999997664 4556667665433 333321111 00112
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHHHHHHHhcCchhhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~~~~i~~~~~~~~~e~ 146 (203)
..+.+++..+....+|+|+.|-|.|+||+..... .||++++.++++++ +..+-+....+.+. -....
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--~g~~~ 157 (251)
T PRK06023 84 SEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHL----HCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRL--MGHQR 157 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHH----hCCEEEEeCCCEecCcccccCCCCCchHHHHHHHH--HhHHH
Confidence 2334566677789999999999999998877765 69999999887754 32221211111110 01111
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.++ .-+.-++..+.+.|+||+|++++++-+...+..+.+
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 199 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEEL 199 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHH
Confidence 1211 112246788999999999999876555444444443
No 39
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=2.8e-06 Score=72.41 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=102.6
Q ss_pred cccceeeeCCeEEEEEEe-CCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHH---HhHHHH
Q psy5160 5 KSGLQSSEKFNLIQILKL-NPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQE---HLGIIR 74 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~-d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E---~~g~~~ 74 (203)
-+.+.++.+.-.|+++-- ++...-+++.+....+.++++.++ ...+-+|.|.-.+ |.++....+ .....+
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLR 85 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHH
Confidence 345667763334555444 443446899999999999997665 4556666664322 333321111 111122
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhH
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYE 147 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~ 147 (203)
...+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. . ....+
T Consensus 86 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-v-G~~~a 159 (261)
T PRK08138 86 HTERYWEAIAQCPKPVIAAVNGYALGGGCELAM----HADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA-V-GKFKA 159 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHH----hCCEEEecCCCEeeCcccccccCCCCcHHHHHHHH-h-CHHHH
Confidence 334566667789999999999999998777664 699999998876653 2111111111100 0 11111
Q ss_pred HH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 148 VE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 148 ~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.+ +.-+.-++..+.+.|+||.|++++++.+...+..+
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 198 (261)
T PRK08138 160 MRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAR 198 (261)
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHH
Confidence 21 12223468889999999999998765554444333
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=2.4e-06 Score=72.55 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=106.2
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHHH----hHHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQEH----LGIIRHG 76 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E~----~g~~~~~ 76 (203)
.+.+..+|.-.-|.-|++..-.+++.+..+.+.+.++.+.. ..+-+|.|.-. .|.++....+. ....+.+
T Consensus 6 ~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06688 6 DLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV 85 (259)
T ss_pred ceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHH
Confidence 46667777533344444434468999999999999976654 56777777533 23443221111 1123344
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~ 149 (203)
.+++..+.....|+|+.|-|.|+||++.... .+|++++.+++.+++ ..+-+....+.+. -....+.+
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~--~G~~~a~~ 159 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLAL----ACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRL--IGRARAAE 159 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHH----hCCEEEecCCCEecCchhhcCCCCCcchhhHHHHH--hhHHHHHH
Confidence 5666677788999999999999998877765 699999998877654 2111111111110 01111222
Q ss_pred Hh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 150 YN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 150 ~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
+. -+.-++..+.+.|+||+|++++++.+...+..+.+.
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~ 199 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLA 199 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 21 122467789999999999998766665555554443
No 41
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.70 E-value=3.3e-06 Score=72.18 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=102.8
Q ss_pred eeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHH-----H-HhHHHHHH
Q psy5160 9 QSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQ-----E-HLGIIRHG 76 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~-----E-~~g~~~~~ 76 (203)
.++++|.-.-|.-|+|....+++.+..+.+.++++.++. ..+-+|.|.-.+ |.++.... + .....+..
T Consensus 14 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK08139 14 LREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARC 93 (266)
T ss_pred EEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHH
Confidence 445556444444455544467999999999999986654 445555554322 33332111 0 11122233
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~ 149 (203)
.+++..+.....|+|+.|-|.|+||++.... .+|++++.+++.++. .++-....+...- ....+.+
T Consensus 94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~v---G~~~A~~ 166 (266)
T PRK08139 94 SRVMQAIVALPQPVIARVHGIATAAGCQLVA----SCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNV---PRKQAME 166 (266)
T ss_pred HHHHHHHHhCCCCEEEEECceeeHHHHHHHH----hCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHh---CHHHHHH
Confidence 4566677789999999999999998877664 699999998876653 2111111111110 1111222
Q ss_pred H--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
+ .-+.-++..+.+.|+||+|++++++.+...+..+.+.
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 206 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIA 206 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHH
Confidence 2 1222467889999999999998776665555554443
No 42
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=2.2e-06 Score=72.99 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=105.9
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCCCcHHHH-------H-h-HH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP-----GFLPGLAQE-------H-L-GI 72 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~-----G~~~g~~~E-------~-~-g~ 72 (203)
.+.++++|.-.-|.-|+|..--+++.+..+.+.+.++.++...+.+|.|.=.+ |.++..... . . ..
T Consensus 5 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK08140 5 TILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESI 84 (262)
T ss_pred eEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHH
Confidence 36777777544455555544468999999999999987765556666664322 334321110 0 0 01
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhh
Q psy5160 73 IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSN 145 (203)
Q Consensus 73 ~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e 145 (203)
.+...+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. -...
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~--vG~~ 158 (262)
T PRK08140 85 ETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLAL----ACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRL--VGMA 158 (262)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHH----hCCEEEecCCCEEeccccccCCCCCccHHHHHHHH--hCHH
Confidence 11223456667788999999999999998877765 699999999887652 2111111111100 0111
Q ss_pred hHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhc
Q psy5160 146 YEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188 (203)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~ 188 (203)
.+.++. -+.-++.++.+.|+||+|++++++.+...+..+.+.+
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~ 203 (262)
T PRK08140 159 RALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLAT 203 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHh
Confidence 122221 1224677899999999999987766655555554443
No 43
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=2.5e-06 Score=71.28 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=103.7
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCCCcHHH----HHhHHHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP-----GFLPGLAQ----EHLGIIRHGSK 78 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~-----G~~~g~~~----E~~g~~~~~a~ 78 (203)
+.++.++.-.-|--|++. --+++.+....+.+.++.+. ...-+|.+.-.+ |.++.... +.....+.+.+
T Consensus 5 i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 82 (229)
T PRK06213 5 VSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGST 82 (229)
T ss_pred EEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHH
Confidence 455555533333334332 26899999999999998776 445666665433 33332111 11122233445
Q ss_pred HHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCC-Ceeee-------eCHHHHHHHHhcCchhhhhhHHH-
Q psy5160 79 LLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT-AEIAV-------MGSKGAVAILYRKEKDKSNYEVE- 149 (203)
Q Consensus 79 ~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~-a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~- 149 (203)
++..+....+|+|+.|-|.|+||+..... .+|+++|.++ +.+++ ..|......+.+. . ......+
T Consensus 83 l~~~l~~~~kPvIAav~G~a~GgG~~lal----~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~-~-g~~~a~~l 156 (229)
T PRK06213 83 LARRLLSHPKPVIVACTGHAIAKGAFLLL----SADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDR-L-TPSAFQRA 156 (229)
T ss_pred HHHHHHcCCCCEEEEEcCeeeHHHHHHHH----hCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHH-c-CHHHHHHH
Confidence 66677788999999999999998877664 6999999998 76653 2233222222110 0 0111111
Q ss_pred -HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhc
Q psy5160 150 -YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188 (203)
Q Consensus 150 -~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~ 188 (203)
+..+.-++.++.+.|+||+|++++++.+...+..+.+..
T Consensus 157 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 196 (229)
T PRK06213 157 VINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAG 196 (229)
T ss_pred HHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhc
Confidence 112224678899999999999987776665555554433
No 44
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=1.3e-06 Score=74.45 Aligned_cols=173 Identities=16% Similarity=0.091 Sum_probs=104.6
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCCCcHHH------HHhHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP-----GFLPGLAQ------EHLGIIRH 75 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~-----G~~~g~~~------E~~g~~~~ 75 (203)
.+.+.++|.-+-|.-|++....+++.+....+.++++.+....+-+|.|.-.+ |.++.... +.......
T Consensus 7 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07659 7 SVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNT 86 (260)
T ss_pred eEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHH
Confidence 36677777555555555545578999999999999987755566666665433 33332211 11112233
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC-------HHHHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG-------SKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g-------p~~~~~i~~~~~~~~~e~~~ 148 (203)
+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.+++-. +-+....+.+. -....+.
T Consensus 87 ~~~~~~~l~~~~~pvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~--vg~~~a~ 160 (260)
T PRK07659 87 ISEIVVTLYTMPKLTISAIHGPAAGLGLSIAL----TADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKR--VGENKAK 160 (260)
T ss_pred HHHHHHHHHhCCCCEEEEecCceecHHHHHHH----hCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHh--cCHHHHH
Confidence 44566677788999999999999998877765 69999999998765311 11111111000 0111122
Q ss_pred HH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 149 EY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
++ .-+.-++..+.+.|+||.|+ +.++.....+..+.+
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l 199 (260)
T PRK07659 161 QIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEW 199 (260)
T ss_pred HHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHH
Confidence 21 12224677899999999999 665544444444433
No 45
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.68 E-value=9.5e-07 Score=74.25 Aligned_cols=173 Identities=17% Similarity=0.119 Sum_probs=110.1
Q ss_pred eeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCcHHH-----HHhHHHHHHHHH
Q psy5160 11 SEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAF-NIPIVTFIDVP-----GFLPGLAQ-----EHLGIIRHGSKL 79 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~-~lPlv~l~Dt~-----G~~~g~~~-----E~~g~~~~~a~~ 79 (203)
++++.-.-|.=|++...-+++.+..+.+.++++.+++. ++-+|.+.-.+ |.++.... +.....+.+.++
T Consensus 3 ~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 82 (245)
T PF00378_consen 3 EIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQEL 82 (245)
T ss_dssp EEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccc
Confidence 34555555555665445789999999999999877654 44566664433 33332111 122334556677
Q ss_pred HHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHHH--
Q psy5160 80 LYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVEY-- 150 (203)
Q Consensus 80 ~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~~-- 150 (203)
+..+....+|+|+.|-|.|+||++.... .+|++|+.+++.+++ ..+.+....+.+. -....+.++
T Consensus 83 ~~~l~~~~kp~Iaav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~--~g~~~a~~l~l 156 (245)
T PF00378_consen 83 LSRLANFPKPTIAAVNGHAVGGGFELAL----ACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRL--IGPSRARELLL 156 (245)
T ss_dssp HHHHHHSSSEEEEEESSEEETHHHHHHH----HSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHH--HHHHHHHHHHH
T ss_pred cccchhhhhheeeccccccccccccccc----ccceEEeecccceeeeecccCccccccccccccee--eeccccccccc
Confidence 7778899999999999999998776664 699999999988663 2222222222110 011112222
Q ss_pred hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhcC
Q psy5160 151 NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 151 ~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~ 189 (203)
.-..-++..+.+.|+||.|+++.++.+...+..+.+...
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~ 195 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAK 195 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTS
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcC
Confidence 112236788999999999999988777776666665544
No 46
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=3e-06 Score=72.02 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=104.2
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEec-----CCCCCCcHHHH--------HhHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFID-----VPGFLPGLAQE--------HLGII 73 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~D-----t~G~~~g~~~E--------~~g~~ 73 (203)
+...++|.-.-|.-|++..-.+++.+..+.+.++++.+++ ..+-+|.|.- +.|.++..-.+ .....
T Consensus 5 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI 84 (260)
T ss_pred eEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence 5667777555555555544468999999999999987754 4555666632 23444432111 11122
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~ 146 (203)
..+.+++..+....+|+|+.|-|.|+||++.... .+|++++++++.+++ ..+-+....+.+. -....
T Consensus 85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vg~~~ 158 (260)
T PRK07511 85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLAL----ACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARA--LPRQL 158 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHH----hCCEEEeeCCCEEeccccccCcCCCchHHHHHHHH--hCHHH
Confidence 3334566667789999999999999998887765 699999999887664 2111221111110 01111
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHH
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~ 185 (203)
+.++ .-+.-++.++.+.|+||.|+++++..+...+..+.
T Consensus 159 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~ 199 (260)
T PRK07511 159 ATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQ 199 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHH
Confidence 2221 12234678899999999999987654444444433
No 47
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=3.5e-06 Score=72.16 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=108.4
Q ss_pred CccccccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH------
Q psy5160 1 MSAYKSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE------ 68 (203)
Q Consensus 1 ~~~~~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E------ 68 (203)
|+.| +.+.++++|.-.-|.-|+|..-.+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++..-.+
T Consensus 2 ~~~~-~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTY-ESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCc-ceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 4444 458888887755565666644578999999999999986654 557777776543 223221100
Q ss_pred ----------HhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-H
Q psy5160 69 ----------HLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-G 131 (203)
Q Consensus 69 ----------~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~ 131 (203)
.......+.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++.-. |. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g 156 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLIS----ACDMRYASADAKFSVREVDLGMVADVG 156 (272)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHH----hCCEEEecCCCeecchhhhhCCCCCch
Confidence 001112234556667788999999999999998777765 69999999998765321 11 1
Q ss_pred HHHHHhcCchhhhhhHHHH--hhhcCCHHHHHHcCCcceecCC-cchHHHHHHHHHHh
Q psy5160 132 AVAILYRKEKDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEP-RTTRMRIAQDLKFL 186 (203)
Q Consensus 132 ~~~i~~~~~~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p-~~tR~~l~~~L~~l 186 (203)
....+.+. . ....+.++ .-+.-++..+.+.|+||+|+++ +++.+...+..+.+
T Consensus 157 ~~~~l~~~-~-G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~i 212 (272)
T PRK06142 157 SLQRLPRI-I-GDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREI 212 (272)
T ss_pred HHHHHHHH-h-CHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHH
Confidence 11111000 0 01112221 2223467889999999999985 65555444444433
No 48
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.68 E-value=1.6e-07 Score=74.26 Aligned_cols=89 Identities=17% Similarity=0.015 Sum_probs=68.2
Q ss_pred cccCH---HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhh
Q psy5160 28 GCIDI---NAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYA 104 (203)
Q Consensus 28 G~~~~---~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~ 104 (203)
|.++. ..+..+.+.++.+.+. -||+..+||||..+. . .-.++..+.....|+++++.|.|.|++++
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~---~-------~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ 75 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVF---A-------GLAIYNALKRHKGKVTVKIDGLAASAASV 75 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHH---H-------HHHHHHHHHhcCCCEEEEEcchHHhHHHH
Confidence 55666 5677777777766555 899999999998642 1 12344455667899999999999998888
Q ss_pred hhhccCCCcceEEecCCCeeeeeCHHH
Q psy5160 105 VMSEKNLRSDVNYAWPTAEIAVMGSKG 131 (203)
Q Consensus 105 ~~~~~~~~~d~~~a~~~a~i~v~gp~~ 131 (203)
... .+|.++|.|++.+++-.|..
T Consensus 76 ia~----a~d~~~~~~~a~~~~~~~~~ 98 (160)
T cd07016 76 IAM----AGDEVEMPPNAMLMIHNPST 98 (160)
T ss_pred HHh----cCCeEEECCCcEEEEECCcc
Confidence 776 69999999999998776653
No 49
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=3.1e-06 Score=72.04 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=104.8
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHH--------HHhHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQ--------EHLGII 73 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~--------E~~g~~ 73 (203)
+.++.+|.-.-|.-|+|..--+++.+..+.+.++++.++. ..+-+|.|.-.+ |.++.... +.....
T Consensus 6 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK05995 6 LEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADA 85 (262)
T ss_pred EEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHH
Confidence 6677777544444455543358999999999999987654 456666664333 23332110 000011
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HHHHHHHHhcCchhhhhhH
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SKGAVAILYRKEKDKSNYE 147 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~~~~~i~~~~~~~~~e~~ 147 (203)
+.+.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++-. |......+.+ .-....+
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~--~vg~~~a 159 (262)
T PRK05995 86 RRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVA----ACDIAVAADHAVFCLSEVRLGLIPATISPYVIR--AMGERAA 159 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHH----hCCEEEeeCCCEEeCcccccccCccchHHHHHH--HhCHHHH
Confidence 2334566677789999999999999998877765 69999999887765311 2221111110 0012222
Q ss_pred HHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 148 VEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 148 ~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.++ .-+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (262)
T PRK05995 160 RRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAAL 200 (262)
T ss_pred HHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHH
Confidence 222 122246788999999999998777666555444444
No 50
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=2.5e-06 Score=74.22 Aligned_cols=173 Identities=11% Similarity=0.089 Sum_probs=106.0
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHHHh-----------
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQEHL----------- 70 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E~~----------- 70 (203)
+.+.++|.-.-|.-|+|..-.+++.+....+.++++.++. ..+-+|.|.-. .|.++....+..
T Consensus 12 v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 91 (302)
T PRK08272 12 MTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPG 91 (302)
T ss_pred EEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccccccc
Confidence 5667777544445555544578999999999999987654 55666666432 234443211100
Q ss_pred -------------------HHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-
Q psy5160 71 -------------------GIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK- 130 (203)
Q Consensus 71 -------------------g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~- 130 (203)
.......+++..+....+|+|+.|-|.|+||++.... .||++||.+++.++.-.-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lal----acD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 92 KRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIAL----HCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHH----hCCEEEEeCCCEecCcchhc
Confidence 0122333456677789999999999999999887765 7999999999877632111
Q ss_pred ----HHHHHHhcCchhhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 131 ----GAVAILYRKEKDKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 131 ----~~~~i~~~~~~~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
......++- ....+.++. -..-++.++.+.|+||.|++++++.+...+..+.+.
T Consensus 168 gg~~~~~~~~~~v---G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia 227 (302)
T PRK08272 168 WGVPATGMWAYRL---GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIA 227 (302)
T ss_pred ccCChHHHHHHHh---hHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHH
Confidence 111111110 112222222 122367789999999999998776555444444443
No 51
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.67 E-value=4e-06 Score=71.20 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=103.3
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH---hHHHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH---LGIIRHGSK 78 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~---~g~~~~~a~ 78 (203)
+..+++|.-.-|.-|+|....+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++....+. ........+
T Consensus 4 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK09674 4 LLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQ 83 (255)
T ss_pred EEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHH
Confidence 4566777544444455545578999999999999987654 456666664322 3333211110 011122334
Q ss_pred HHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHH-HHHhcCchhhhhhHHH-
Q psy5160 79 LLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAV-AILYRKEKDKSNYEVE- 149 (203)
Q Consensus 79 ~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~-~i~~~~~~~~~e~~~~- 149 (203)
++..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+.. .+...- ....+.+
T Consensus 84 ~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i---g~~~a~~l 156 (255)
T PRK09674 84 LWQRLQAFNKPLIAAVNGYALGAGCELAL----LCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSV---GKSLASQM 156 (255)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHH----hCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHh---CHHHHHHH
Confidence 56667789999999999999998777765 699999999887653 2111111 111110 1111122
Q ss_pred -HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 150 -YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 150 -~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.-+.-++.++.+.|+||.|+++++..+...+..+.+
T Consensus 157 ~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l 194 (255)
T PRK09674 157 VLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKI 194 (255)
T ss_pred HHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHH
Confidence 1122346788999999999999876554444444444
No 52
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=5.9e-06 Score=70.73 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=105.0
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecCC------CCCCcHHH------H-HhHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAF-NIPIVTFIDVP------GFLPGLAQ------E-HLGI 72 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~-~lPlv~l~Dt~------G~~~g~~~------E-~~g~ 72 (203)
.+.++.+|.-.-|.-|++..-.+++.+..+.+.++++.+++. .+=+|.|.-.+ |.++.... + ....
T Consensus 12 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 91 (269)
T PRK06127 12 KLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAY 91 (269)
T ss_pred ceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHH
Confidence 356677775444444445455789999999999999877654 44455554333 22322110 0 0111
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHH-HH-HHHHhcCchhhh
Q psy5160 73 IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSK-GA-VAILYRKEKDKS 144 (203)
Q Consensus 73 ~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~-~~-~~i~~~~~~~~~ 144 (203)
.+...+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++- .|. +. ..+...- ..
T Consensus 92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~Lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---G~ 164 (269)
T PRK06127 92 EQAVEAAQAALADYAKPTIACIRGYCIGGGMGIAL----ACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLV---GP 164 (269)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHH----hCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHh---CH
Confidence 22233456667789999999999999998877765 6999999999877642 121 11 1111110 11
Q ss_pred hhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 145 NYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 145 e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
.++.+ +.-+.-++..+.+.|+||+|++++++.+...+..+.+.
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~ 209 (269)
T PRK06127 165 SAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIA 209 (269)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHH
Confidence 11222 12223467789999999999998776665555554443
No 53
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=4.1e-06 Score=72.02 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred ccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecC-----CCCCCcHHH---------HHh
Q psy5160 6 SGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDV-----PGFLPGLAQ---------EHL 70 (203)
Q Consensus 6 ~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt-----~G~~~g~~~---------E~~ 70 (203)
..+.++++|.-.-|.-|++...-+++.+....+..+++.++ ...+-+|.|.-. .|.++.... +..
T Consensus 17 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred cceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 35677887765555555554446899999999998887665 455666666432 233332110 001
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHH-HHHHHHhcCchh
Q psy5160 71 GIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSK-GAVAILYRKEKD 142 (203)
Q Consensus 71 g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~-~~~~i~~~~~~~ 142 (203)
...+...+++..+....+|+|++|-|.|+||++.... .||++||.+++.+++ .+|. +....+.+. -
T Consensus 97 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal----acD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~--v 170 (277)
T PRK08258 97 AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAM----ASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRI--I 170 (277)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHH----hCCEEEecCCCEEeccccccCcCCCCchHHHHHHHH--h
Confidence 1222234566677789999999999999998877765 699999999877653 2222 111111110 0
Q ss_pred hhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 143 KSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 143 ~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
....+.++ .-+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 171 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 216 (277)
T PRK08258 171 GQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRL 216 (277)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHH
Confidence 11112222 122246788999999999999876655544444443
No 54
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=2.6e-06 Score=71.94 Aligned_cols=163 Identities=12% Similarity=0.031 Sum_probs=98.6
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEec-----CCCCCCcHHHHHhHHHHHHHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFID-----VPGFLPGLAQEHLGIIRHGSKLLYA 82 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~D-----t~G~~~g~~~E~~g~~~~~a~~~~a 82 (203)
++++++|.-.-|.-|+|...-+++.+....+.++++.+++..+-+|.|.- +.|.++............+.+++..
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA 81 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH
Confidence 45677775333444444444689999999999999877665666666643 2344443211111222334456677
Q ss_pred HHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHHHh--hh
Q psy5160 83 YAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVEYN--DK 153 (203)
Q Consensus 83 ~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~~~--~~ 153 (203)
+.....|+|+.|-|.|+||++.... .+|+++|.+++.++. ..+-+....+.+. -....+.++. -.
T Consensus 82 l~~~~kP~Iaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~--~G~~~a~~l~ltg~ 155 (243)
T PRK07854 82 IDAAPVPVIAAINGPAIGAGLQLAM----ACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSL--VGGGRARAMLLGAE 155 (243)
T ss_pred HHhCCCCEEEEecCcccccHHHHHH----hCCEEEEcCCCEEeccccccccCCCccHHHHHHHH--hCHHHHHHHHHcCC
Confidence 7788999999999999998877765 699999999887663 1111111111000 0111122221 12
Q ss_pred cCCHHHHHHcCCcceecCCcchH
Q psy5160 154 FRSPVAAAKKGYIDDIIEPRTTR 176 (203)
Q Consensus 154 ~~~~~~~~~~G~iD~Vi~p~~tR 176 (203)
.-++.++.+.|+||+|.+..++.
T Consensus 156 ~~~a~eA~~~Glv~~v~~~~~a~ 178 (243)
T PRK07854 156 KLTAEQALATGMANRIGTLADAQ 178 (243)
T ss_pred CcCHHHHHHCCCcccccCHHHHH
Confidence 24677899999999997644333
No 55
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.65 E-value=3.4e-06 Score=68.01 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=101.4
Q ss_pred eeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHH----H---HhHHHHHH
Q psy5160 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQ----E---HLGIIRHG 76 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~----E---~~g~~~~~ 76 (203)
++.++.-.-|.-|++..-.+++.+..+.+.++++.+.. ..+-+|.|.-.+ |.++.... + .....+..
T Consensus 3 ~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~ 82 (195)
T cd06558 3 VERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIREL 82 (195)
T ss_pred EEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHH
Confidence 45555333334444423478999999999999987765 556666665533 33322110 0 12234455
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC-------HHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG-------SKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g-------p~~~~~i~~~~~~~~~e~~~~ 149 (203)
.+++..+....+|+|+++-|.|+|+++.... .+|++++.+++.++... |.+....+.+.- ......+
T Consensus 83 ~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~----~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~--g~~~a~~ 156 (195)
T cd06558 83 QELLRALLRLPKPVIAAVNGAALGGGLELAL----ACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLV--GPARARE 156 (195)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHH----hCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHh--CHHHHHH
Confidence 5667777788999999999999998777664 69999999998776432 222222221110 1122222
Q ss_pred Hh--hhcCCHHHHHHcCCcceecCCcchHHHHHH
Q psy5160 150 YN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQ 181 (203)
Q Consensus 150 ~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~ 181 (203)
+. ...-++.++.+.|++|++++.+++.+...+
T Consensus 157 ~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~ 190 (195)
T cd06558 157 LLLTGRRISAEEALELGLVDEVVPDEELLAAALE 190 (195)
T ss_pred HHHcCCccCHHHHHHcCCCCeecChhHHHHHHHH
Confidence 21 112357789999999999998665554433
No 56
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.65 E-value=4.2e-06 Score=71.17 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=103.9
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC------CCCCcHHHH---HhH-HHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP------GFLPGLAQE---HLG-IIRHG 76 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~------G~~~g~~~E---~~g-~~~~~ 76 (203)
+.++++|.-.-|--|+|..--+++.+..+.+.++++.++ ...+-+|.|.-.+ |.++..... ... ....+
T Consensus 4 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPM 83 (256)
T ss_pred eEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHH
Confidence 566777754444445554446899999999999998765 4455566665333 233321110 001 11223
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~ 149 (203)
..++..+.....|+|+.|-|.|+||++.... .||++++.+++.++. ..|......+.+. . ....+.+
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~-v-G~~~A~~ 157 (256)
T TIGR03210 84 EELHSAIRDVPKPVIARVQGYAIGGGNVLVT----ICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARV-V-GEKKARE 157 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEehhhHHHHH----hCCEEEEeCCCEEecccccccccCCccHHHHHHHH-h-CHHHHHH
Confidence 3466667788999999999999998887765 699999999887764 2232222222110 0 1111222
Q ss_pred H--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+ .-+.-++..+.+.|+||.|++++++.+...+..+.+
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i 196 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEI 196 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHH
Confidence 1 122246788999999999999876555444444333
No 57
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.65 E-value=3.6e-06 Score=71.55 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=99.8
Q ss_pred ccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEec-----CCCCCCcHHHH-----Hh--HHH
Q psy5160 6 SGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFID-----VPGFLPGLAQE-----HL--GII 73 (203)
Q Consensus 6 ~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~D-----t~G~~~g~~~E-----~~--g~~ 73 (203)
+.+++++++.-.-|.-|+|...-+++.+..+.+.++++.++. .+-+|.|.- +.|.++..-.+ .. ...
T Consensus 4 ~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07112 4 QTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA 82 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence 357888887544445555544468999999999999987763 566666643 23444432111 00 012
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHHHHHHHhcCchhhhhhH
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKGAVAILYRKEKDKSNYE 147 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~~~~i~~~~~~~~~e~~ 147 (203)
+...+++..+....+|+|+.|-|.|+||++.... .+|++++.+++.+++. .|......+.+. . ....+
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~-v-g~~~a 156 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVA----ASDIVIADETAPFSLSELLFGLIPACVLPFLIRR-I-GTQKA 156 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHH----cCCEEEEcCCCEEeCchhhhccCcchhhHHHHHH-h-CHHHH
Confidence 2234566677788999999999999998877765 6999999999877651 122111111100 0 11112
Q ss_pred HHH--hhhcCCHHHHHHcCCcceecCCcc
Q psy5160 148 VEY--NDKFRSPVAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 148 ~~~--~~~~~~~~~~~~~G~iD~Vi~p~~ 174 (203)
.++ ..+.-++..+.+.|+||+|+++.+
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 157 HYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred HHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 221 122346778999999999998654
No 58
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=5.7e-06 Score=70.79 Aligned_cols=173 Identities=16% Similarity=0.081 Sum_probs=101.1
Q ss_pred ceeeeCCeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHH-------HhHHH
Q psy5160 8 LQSSEKFNLIQILK-LNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQE-------HLGII 73 (203)
Q Consensus 8 ~~~~i~Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E-------~~g~~ 73 (203)
+.++...-.|+++- |++..-.+++.+....+.++++.+++ ..+-+|.|.-. .|.++..-.+ .....
T Consensus 13 i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 92 (268)
T PRK07327 13 LRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVW 92 (268)
T ss_pred EEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHH
Confidence 55666322355444 44433468999999999998876654 45555655432 2334321110 11122
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~ 146 (203)
+...+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+.+....+.+. -....
T Consensus 93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vG~~~ 166 (268)
T PRK07327 93 REARDLVYNVINCDKPIVSAIHGPAVGAGLVAAL----LADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLL--CGMAK 166 (268)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHH----hCCEEEecCCCEEeCcccccCCCCCcchhhHHHHH--hCHHH
Confidence 2334566667788999999999999998877765 699999999887653 2111111111000 01112
Q ss_pred HHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 147 EVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 147 ~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.++. -+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 208 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERL 208 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence 22221 12246778999999999999876655544444433
No 59
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=4.2e-06 Score=71.39 Aligned_cols=174 Identities=10% Similarity=0.012 Sum_probs=103.7
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhC-C-CcEEEEecCC-----CCCCcHHH----------HH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAF-N-IPIVTFIDVP-----GFLPGLAQ----------EH 69 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~-~-lPlv~l~Dt~-----G~~~g~~~----------E~ 69 (203)
.++++++|.-.-|.-|++....+++.+..+.+.++++.+.+. . +=+|.|.-.+ |.++.... +.
T Consensus 5 ~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (266)
T PRK05981 5 KVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA 84 (266)
T ss_pred eEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence 467777775434444444355789999999999999877653 2 5555554322 23332111 00
Q ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCch
Q psy5160 70 -LGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEK 141 (203)
Q Consensus 70 -~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~ 141 (203)
......+.+++..+.....|+|++|-|.|+||++.... .+|+++|.+++.++... |. +....+.+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~-- 158 (266)
T PRK05981 85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFAL----MGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL-- 158 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHH----hCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH--
Confidence 01112234566677789999999999999999887765 79999999998775321 11 111111100
Q ss_pred hhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 142 DKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 142 ~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
-....+.++ .-+.-++..+.+.|+||.|+++++.-+...+..+.+
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l 205 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHEL 205 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHH
Confidence 011112221 122246778999999999999876655544444444
No 60
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.64 E-value=3.4e-06 Score=71.83 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=101.8
Q ss_pred ceeee-CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCcHHHH-----HhHH-H
Q psy5160 8 LQSSE-KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP------GFLPGLAQE-----HLGI-I 73 (203)
Q Consensus 8 ~~~~i-~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~------G~~~g~~~E-----~~g~-~ 73 (203)
++..+ ++.-.-|.-|+|...-+++.+..+.+.+.++.++. ..+-+|.|.-.+ |.++....+ ..+. .
T Consensus 4 i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR 83 (259)
T ss_pred EEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence 56676 56544444455544458999999999999976654 455566554333 223321110 0010 0
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------H-HHHHHHHhcCchhhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------S-KGAVAILYRKEKDKSNY 146 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p-~~~~~i~~~~~~~~~e~ 146 (203)
....+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++-. | -.....+.+. -....
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~--vG~~~ 157 (259)
T TIGR01929 84 LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHV----VCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARI--VGQKK 157 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHH----hCCEEEecCCCEecCcccccccCCCccHHHHHHHH--hHHHH
Confidence 1123455567788999999999999998887765 69999999888766421 2 1122111110 01111
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.++ .-+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 199 (259)
T TIGR01929 158 AREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREI 199 (259)
T ss_pred HHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHH
Confidence 2221 122246788999999999999876655544444333
No 61
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.64 E-value=4.6e-06 Score=71.69 Aligned_cols=174 Identities=11% Similarity=0.090 Sum_probs=106.5
Q ss_pred ceeeeCCeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH----H-h----H
Q psy5160 8 LQSSEKFNLIQILK-LNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE----H-L----G 71 (203)
Q Consensus 8 ~~~~i~Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E----~-~----g 71 (203)
+.++++|. |+++- |++...-+++.+..+.+.++++.++. ..+-+|.|.-.+ |.++..... . . .
T Consensus 10 i~~~~~~~-va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PRK09120 10 VKVEVEDG-IAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQER 88 (275)
T ss_pred EEEEEECC-EEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHH
Confidence 67777775 55544 44444568999999999999987654 556666664332 333321100 0 0 0
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKS 144 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~ 144 (203)
..+..-.++..+....+|+|+.|-|.|+||++.... .||++++++++.++. ..+-+....+.+. -..
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--iG~ 162 (275)
T PRK09120 89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLV----ACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT--VGH 162 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHH----hCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH--cCH
Confidence 111223456667788999999999999999888765 699999998877654 2221222211110 011
Q ss_pred hhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhc
Q psy5160 145 NYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188 (203)
Q Consensus 145 e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~ 188 (203)
..+.+ +.-+.-++..+.+.|+||.|++++++.+...+..+.+..
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 208 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLE 208 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 11222 112224677899999999999988777766665555443
No 62
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=6.4e-06 Score=70.04 Aligned_cols=170 Identities=12% Similarity=0.096 Sum_probs=103.1
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH-------HhHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE-------HLGII 73 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E-------~~g~~ 73 (203)
.+.+.++|.-.-|.-|+|.. -+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++....+ .....
T Consensus 5 ~i~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (257)
T PRK06495 5 QLKLEVSDHVAVVTLDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHN 83 (257)
T ss_pred eEEEEeeCCEEEEEECCCcc-ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHH
Confidence 35666666544444444433 78999999999999986654 455566665322 223321110 01111
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHH-HHHHHhcCchhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKG-AVAILYRKEKDKSN 145 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~-~~~i~~~~~~~~~e 145 (203)
....+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++. +|+-. ..+++ ...
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~------g~~ 153 (257)
T PRK06495 84 RRTRECFHAIRECAKPVIAAVNGPALGAGLGLVA----SCDIIVASENAVFGLPEIDVGLAGGGKHAMRLF------GHS 153 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHH----hCCEEEecCCCEeeChhhccCccccHHHHHHHh------CHH
Confidence 2234556667788999999999999998877765 699999998876653 32211 11111 111
Q ss_pred hHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 146 YEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 146 ~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
.+.++ .-+.-++..+.+.|+||+|+++.++.+...+..+.+.
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~ 197 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIA 197 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence 12221 1223467789999999999998776555555554443
No 63
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=6.4e-06 Score=70.02 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=104.8
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC--CCCcHHH-H------------Hh
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVPG--FLPGLAQ-E------------HL 70 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~G--~~~g~~~-E------------~~ 70 (203)
.+.++.+|.-.-|.-|+|...-+++.+..+.+.++++.+++ ..+-+|.|.-+++ |--|.+- + ..
T Consensus 4 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 4 TVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred eEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 46777777655555565544468999999999999987654 4566666654331 3222110 1 01
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhh
Q psy5160 71 GIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDK 143 (203)
Q Consensus 71 g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~ 143 (203)
...+...+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. -.
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vG 157 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITE----AVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRL--AG 157 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhH----hCCEEEecCCCEecCcccccCCCCCchHhhHHHhh--cC
Confidence 1112223456667788999999999999998887765 699999998877653 2111222111110 01
Q ss_pred hhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 144 SNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 144 ~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
...+.+ +.-..-++..+.+.|+||+|++++++.+...+..+.+
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 202 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRI 202 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHH
Confidence 111222 1122246788999999999999877655544444333
No 64
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.62 E-value=4.7e-06 Score=70.85 Aligned_cols=173 Identities=15% Similarity=0.109 Sum_probs=102.4
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC---C----CCcHH-----HHHhHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVPG---F----LPGLA-----QEHLGIIR 74 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~G---~----~~g~~-----~E~~g~~~ 74 (203)
+.++.+|.-.-|.-|+|....+++.+..+.+.++++.+.+ ..+-+|.|. +.| | ++..- .+.....+
T Consensus 6 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~-g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK05809 6 VILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILT-GAGEKAFVAGADISEMKDLNEEEGRKFGL 84 (260)
T ss_pred EEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEE-cCCCCceeeCcChHhHhccChHHHHHHHH
Confidence 5666666433344444444468999999999999986654 445555554 333 2 22211 01111122
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHHH-HHHHhcCchhhhhhH
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKGA-VAILYRKEKDKSNYE 147 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~~-~~i~~~~~~~~~e~~ 147 (203)
...+++..+....+|+|+.|-|.|.||++.... .+|++++.+++.+++- -|... ...+.+. -....+
T Consensus 85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vG~~~a 158 (260)
T PRK05809 85 LGNKVFRKLENLDKPVIAAINGFALGGGCELSM----ACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARI--VGPGKA 158 (260)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHH----hCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHH--hCHHHH
Confidence 234566677789999999999999998877765 6999999988776641 12211 1111100 011112
Q ss_pred HHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 148 VEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 148 ~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
.++ .-+.-++.++.+.|+||+|++++++.+...+..+.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 200 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIA 200 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHH
Confidence 221 1222467889999999999998776555555444443
No 65
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.60 E-value=7e-06 Score=70.50 Aligned_cols=178 Identities=14% Similarity=0.148 Sum_probs=105.2
Q ss_pred Ccccccc--ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHHH---
Q psy5160 1 MSAYKSG--LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQEH--- 69 (203)
Q Consensus 1 ~~~~~~~--~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E~--- 69 (203)
|..|++= ++...++.-.-|.-|+|...-+++.+..+.+.++++.++ ...+-+|.|.-.+ |.++....+.
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~ 80 (275)
T PLN02664 1 MESYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQ 80 (275)
T ss_pred CCCccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccc
Confidence 3445543 344456654445555554446899999999999997665 4556677665433 3333211110
Q ss_pred -------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHH
Q psy5160 70 -------------LGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSK 130 (203)
Q Consensus 70 -------------~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~ 130 (203)
......+.+++..+.....|+|+.|-|.|+||++.... .+|++++.+++.++.- .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~ 156 (275)
T PLN02664 81 SSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVT----ACDIRYCSEDAFFSVKEVDLAITAD 156 (275)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHH----hCCEEEecCCCEeccHHHhhCCCCC
Confidence 01112234556667789999999999999998877765 6999999999877641 111
Q ss_pred HH-HHHHhcCchhhhhhHHH--HhhhcCCHHHHHHcCCcceecCC-cchHHHHHHHHH
Q psy5160 131 GA-VAILYRKEKDKSNYEVE--YNDKFRSPVAAAKKGYIDDIIEP-RTTRMRIAQDLK 184 (203)
Q Consensus 131 ~~-~~i~~~~~~~~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p-~~tR~~l~~~L~ 184 (203)
.. ...+.+. -....+.+ +.-+.-++.++.+.|+||+|+++ +++.+.+.+..+
T Consensus 157 ~g~~~~l~~~--vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~ 212 (275)
T PLN02664 157 LGTLQRLPSI--VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAE 212 (275)
T ss_pred ccHHHHHHHH--hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHH
Confidence 11 1111000 01111222 12223467889999999999985 666554444333
No 66
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.60 E-value=5.3e-06 Score=70.23 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=104.0
Q ss_pred cccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH-hHH--HHH
Q psy5160 5 KSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH-LGI--IRH 75 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~-~g~--~~~ 75 (203)
||-+-+++++.-.-|.-|++...-+++.+....+.++++.+++ ..+.+|.|.-.+ |.++....+. .+. ...
T Consensus 4 ~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK07110 4 KVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE 83 (249)
T ss_pred CceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh
Confidence 3444466666543444444544468999999999999876654 456677775433 2332211110 011 111
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~ 148 (203)
..++..+.....|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. . ....+.
T Consensus 84 -~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~-g~~~a~ 156 (249)
T PRK07110 84 -ANLYSLALNCPIPVIAAMQGHAIGGGLVLGL----YADIVVLSRESVYTANFMKYGFTPGMGATAILPEK-L-GLALGQ 156 (249)
T ss_pred -HHHHHHHHcCCCCEEEEecCceechHHHHHH----hCCEEEEeCCCEecCchhccCCCCCchHHHHHHHH-h-CHHHHH
Confidence 3566667789999999999999998877765 699999999876543 2111111111110 0 111122
Q ss_pred H--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 149 E--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 149 ~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
+ +.-+.-++.++.+.|+||.|++++++.+...+..+.+.
T Consensus 157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 197 (249)
T PRK07110 157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLA 197 (249)
T ss_pred HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHH
Confidence 2 11222467789999999999998776555555444443
No 67
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=6.9e-06 Score=70.02 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=103.9
Q ss_pred cceeeeCCeEEEEEEeC-CCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH--------HhH
Q psy5160 7 GLQSSEKFNLIQILKLN-PKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE--------HLG 71 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d-~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E--------~~g 71 (203)
.+..++++..|+++--| |..--+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++..-.+ ...
T Consensus 5 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (262)
T PRK07468 5 TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIE 84 (262)
T ss_pred eEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHH
Confidence 46777754346665554 434468999999999999987764 445555554322 333321110 001
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHH-HHHHHhcCchhhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKG-AVAILYRKEKDKS 144 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~-~~~i~~~~~~~~~ 144 (203)
..+.+..++..+.....|+|+.|-|.|+||++.... .+|++++.+++.++.- .|.. ......+ . ..
T Consensus 85 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~--v-G~ 157 (262)
T PRK07468 85 EARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLIS----VCDVAIAVSGARFGLTETRLGLIPATISPYVVAR--M-GE 157 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHH----hCCEEEEeCCCEEeCchhccCCCcccchhhHHhh--c-cH
Confidence 122334466677789999999999999999887765 6999999998765531 1221 1111111 1 11
Q ss_pred hhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 145 NYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 145 e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
..+.++ .-+.-++..+.+.|+||+|+++++..+.+.+..+.+
T Consensus 158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l 201 (262)
T PRK07468 158 ANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPY 201 (262)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence 122221 122346778999999999999776655544443333
No 68
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=9.5e-06 Score=69.15 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=103.0
Q ss_pred CccccccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH-hH-H
Q psy5160 1 MSAYKSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH-LG-I 72 (203)
Q Consensus 1 ~~~~~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~-~g-~ 72 (203)
|.+|+ .+.+..+|.-.-|.-|+|..--+++....+.+.++++.+++ ..+-+|.|.-.+ |.++...... .+ .
T Consensus 1 ~~~~~-~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 1 MEGGP-HALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCCCc-eEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccch
Confidence 56675 47778877544455555544468999999999999987754 445555554322 2333211100 00 0
Q ss_pred -------HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee------eCHH-HHHHHHhc
Q psy5160 73 -------IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV------MGSK-GAVAILYR 138 (203)
Q Consensus 73 -------~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v------~gp~-~~~~i~~~ 138 (203)
...+.. +..+.....|+|+.|-|.|+||++.... .||++++.+++.++. +-|. +....+.+
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r 154 (263)
T PRK07799 80 FKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQ----GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVR 154 (263)
T ss_pred hhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHH----hCCEEEecCCCEecCcccccCcCCCccHHHHHHH
Confidence 011111 2234578999999999999998777765 699999999986654 1121 11111111
Q ss_pred CchhhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 139 KEKDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 139 ~~~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
. -....+.++ .-+.-++.++.+.|+||.|+++.+.-+...+..+.+
T Consensus 155 ~--vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~ 202 (263)
T PRK07799 155 Q--IPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELI 202 (263)
T ss_pred H--hCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHH
Confidence 0 011112221 122346788999999999999876544433444333
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=7.3e-06 Score=69.91 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=105.0
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHH---HhHHHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQE---HLGIIRHGSK 78 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E---~~g~~~~~a~ 78 (203)
+.++++|.-.-|.-|++....+++.+..+.+.++++.++. ..+-+|.|.-. .|.++....+ .........+
T Consensus 6 v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06190 6 LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPN 85 (258)
T ss_pred EEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHH
Confidence 5566666544455555544568999999999999987654 45566666432 3444432111 0011122345
Q ss_pred HHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHHH-
Q psy5160 79 LLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVEY- 150 (203)
Q Consensus 79 ~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~~- 150 (203)
++..+.....|+|+.|-|.|+||++.... .+|+++|.+++.++. ..+-+....+.+. -....+.++
T Consensus 86 ~~~~i~~~~kPvIAaV~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~--vG~~~a~~l~ 159 (258)
T PRK06190 86 PSPAWPAMRKPVIGAINGAAVTGGLELAL----ACDILIASERARFADTHARVGILPGWGLSVRLPQK--VGIGRARRMS 159 (258)
T ss_pred HHHHHHhCCCCEEEEECCEeecHHHHHHH----hCCEEEEeCCCEEECcccccCcCCCccHHHHHHHH--hCHHHHHHHH
Confidence 66677789999999999999998877765 699999998887653 2222222212110 011122222
Q ss_pred -hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 151 -NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 151 -~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.-+.-++.++.+.|+||.|++++++.+...+..+.+
T Consensus 160 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 196 (258)
T PRK06190 160 LTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASI 196 (258)
T ss_pred HhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHH
Confidence 122246788999999999999876655544444444
No 70
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=6.3e-06 Score=69.92 Aligned_cols=172 Identities=14% Similarity=0.093 Sum_probs=103.2
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHH------HHhH---H
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQ------EHLG---I 72 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~------E~~g---~ 72 (203)
+..++++.-.-|.-|+|...-+++.+..+.+.++++.+.. ..+-+|.|.-.+ |.++..-. +... .
T Consensus 4 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKI 83 (255)
T ss_pred eEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHH
Confidence 4556666433344444433467999999999999986654 455566664433 22322110 0000 1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHH---------HHhcCchhh
Q psy5160 73 IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVA---------ILYRKEKDK 143 (203)
Q Consensus 73 ~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~---------i~~~~~~~~ 143 (203)
.+...+++..+....+|+|+.|-|.|.||++.... .+|+++|++++.++. |+.-.. .+.+. . .
T Consensus 84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~ria~~~a~f~~--pe~~~Gl~p~~g~~~~l~~~-v-g 155 (255)
T PRK07260 84 AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAV----AADFCIASTKTKFIQ--AFVGVGLAPDAGGLFLLTRA-I-G 155 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHH----hCCEEEEeCCCEEec--hHhhcCCCCCCchhhhhHHh-h-C
Confidence 12234555667789999999999999998777764 699999999988764 332111 11110 0 1
Q ss_pred hhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 144 SNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 144 ~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
...+.+ +.-+.-++..+.+.|+||+|++++++.+...+..+.+.
T Consensus 156 ~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (255)
T PRK07260 156 LNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLR 201 (255)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHH
Confidence 111222 11223467889999999999998776666555554444
No 71
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.57 E-value=2.4e-06 Score=68.90 Aligned_cols=131 Identities=21% Similarity=0.195 Sum_probs=89.0
Q ss_pred cccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEc---CCCchhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVIT---RKAYGGAY 103 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~---g~~~Gga~ 103 (203)
|.+++....-+.|.++.|.+.+ -+|++.+||||..+... -.++..+....+|+++++. |.+.++++
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~----------~~I~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA----------GNIVQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH----------HHHHHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 7788888888899999887654 68999999999875311 2334455667899999999 77776666
Q ss_pred hhhhccCCCcceEEecCCCeeeeeCHHHHH-----------HHH-----hcCchh-----hhhhHHH-Hh-hhcCCHHHH
Q psy5160 104 AVMSEKNLRSDVNYAWPTAEIAVMGSKGAV-----------AIL-----YRKEKD-----KSNYEVE-YN-DKFRSPVAA 160 (203)
Q Consensus 104 ~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~-----------~i~-----~~~~~~-----~~e~~~~-~~-~~~~~~~~~ 160 (203)
+... .+|.++|.|++.++..+|-... ++. +-.... ..+.+++ .. ....++.++
T Consensus 78 ~I~~----a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 78 YIAL----GSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred HHHH----hcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 6654 5899999999999999984310 000 000000 0111111 11 123578899
Q ss_pred HHcCCcceecCC
Q psy5160 161 AKKGYIDDIIEP 172 (203)
Q Consensus 161 ~~~G~iD~Vi~p 172 (203)
.+.|+||.|+.-
T Consensus 154 ~~~G~iD~ia~~ 165 (172)
T cd07015 154 LKYGVIEVVARD 165 (172)
T ss_pred HHcCCceeeeCC
Confidence 999999999984
No 72
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.57 E-value=9.7e-06 Score=69.05 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=103.3
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCCC--CCCcHHHHH--------hHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVPG--FLPGLAQEH--------LGIIRH 75 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~G--~~~g~~~E~--------~g~~~~ 75 (203)
.+.+.++|.-.-|.=|++.. -+++.+....+.++++.++ ...+-+|.|.-.++ |-.|-+-.. ......
T Consensus 4 ~i~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG 82 (261)
T ss_pred eEEEEEECCEEEEEECCccc-cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence 36677777655455555533 6899999999999997664 44566666653331 322211110 001111
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~ 148 (203)
....+..+....+|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. . ....+.
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~-v-g~~~a~ 156 (261)
T PRK03580 83 GFAGLTEIFDLDKPVIAAVNGYAFGGGFELAL----AADFIVCADNASFALPEAKLGIVPDSGGVLRLPKR-L-PPAIAN 156 (261)
T ss_pred hhHHHHHHHhCCCCEEEEECCeeehHHHHHHH----HCCEEEecCCCEEeCcccccCcCCCccHHHHHHHH-h-CHHHHH
Confidence 12345567788999999999999998877765 699999998877653 2111111111100 0 111222
Q ss_pred HH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 149 EY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
++ .-+.-++..+.+.|+||+|++++++.+...+..+.+
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 196 (261)
T PRK03580 157 EMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQL 196 (261)
T ss_pred HHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHH
Confidence 22 122346778999999999999877665554444444
No 73
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=8e-06 Score=70.90 Aligned_cols=172 Identities=14% Similarity=0.105 Sum_probs=101.9
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHH------------
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQE------------ 68 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E------------ 68 (203)
.++++++|.-.-|.-|++....+++.+....+.++++.+++ ..+-+|.|.-. .|.++.....
T Consensus 5 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (296)
T PRK08260 5 TIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE 84 (296)
T ss_pred eEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence 46677766444444444545578999999999999987754 55666666432 2334322110
Q ss_pred ----------HhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HHHH
Q psy5160 69 ----------HLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SKGA 132 (203)
Q Consensus 69 ----------~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~~~ 132 (203)
.........+++..+....+|+|+.|-|.|+||++.... .||++|+.+++.+++-. |...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~Lal----acD~ria~~~a~f~~pe~~~Gl~p~~g 160 (296)
T PRK08260 85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTL----AMDIRLASTAARFGFVFGRRGIVPEAA 160 (296)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHH----hCCEEEeeCCCEEecchhhcCcCCCcc
Confidence 001111223456667788999999999999998877765 79999999988776421 1111
Q ss_pred HH-HHhcCchhhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 133 VA-ILYRKEKDKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 133 ~~-i~~~~~~~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.. .+.+ .-....+.++. -+.-++..+.+.|+||.|++++++.....+..+
T Consensus 161 ~~~~l~r--~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~ 213 (296)
T PRK08260 161 SSWFLPR--LVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAR 213 (296)
T ss_pred hhhhHHH--hhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHH
Confidence 11 1100 00111122221 122467789999999999998765544444333
No 74
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.56 E-value=9.6e-06 Score=69.63 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=103.3
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCcHHHH-----HhHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP------GFLPGLAQE-----HLGIIR 74 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~------G~~~g~~~E-----~~g~~~ 74 (203)
.+.++.++.-.-|.-|++....+++.+..+.+..+++.++. ..+-+|.|.-.+ |.++....+ ......
T Consensus 14 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 93 (273)
T PRK07396 14 DILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPR 93 (273)
T ss_pred ceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhh
Confidence 36677777555555555543458999999999999987654 345566664332 333321110 001110
Q ss_pred -HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-------HHHHHHhcCchhhhhh
Q psy5160 75 -HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK-------GAVAILYRKEKDKSNY 146 (203)
Q Consensus 75 -~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~-------~~~~i~~~~~~~~~e~ 146 (203)
....++..+....+|+|+.|-|.|+||++.... .+|++++.+++.+++..+. .....+.+. -....
T Consensus 94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~--vG~~~ 167 (273)
T PRK07396 94 LNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHL----VCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARI--VGQKK 167 (273)
T ss_pred hHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHH----hCCEEEeeCCcEEecccccccccCCchHHHHHHHH--hhHHH
Confidence 112355566788999999999999998777764 6999999999877753222 111111110 01111
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHH
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~ 185 (203)
+.++ .-+.-++.++.+.|+||+|++++++.+...+..+.
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ 208 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCRE 208 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHH
Confidence 2222 12234678899999999999987655544444433
No 75
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=6.4e-06 Score=70.47 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=103.0
Q ss_pred cceeeeCCeEEEEEEeC-CCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH----h-----
Q psy5160 7 GLQSSEKFNLIQILKLN-PKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH----L----- 70 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d-~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~----~----- 70 (203)
.+.+++++..|+++--| |...-+++.+..+.+.+.++.... ..+=+|.|.-.+ |+++....+. .
T Consensus 6 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06210 6 AVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTD 85 (272)
T ss_pred eEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccccc
Confidence 47888888456555544 435578999999999999976644 445555555332 2333211100 0
Q ss_pred --HHH----HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHh
Q psy5160 71 --GII----RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILY 137 (203)
Q Consensus 71 --g~~----~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~ 137 (203)
... ..+-+++..+....+|+|+.|-|.|+||++.... .+|++++.+++.++.-. |. +....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 86 VRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHAL----MCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred chhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHH----hCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 000 0112345567788999999999999998887775 79999999998876411 11 1111111
Q ss_pred cCchhhhhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 138 RKEKDKSNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 138 ~~~~~~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+. . ....+.+ +..+.-++..+.+.|+||.|+++++..+...+..+.+
T Consensus 162 ~~-i-g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i 210 (272)
T PRK06210 162 RL-V-GHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDL 210 (272)
T ss_pred hh-h-CHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence 10 0 1111222 1222346778999999999999876555444444433
No 76
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=9.1e-06 Score=69.03 Aligned_cols=172 Identities=13% Similarity=0.043 Sum_probs=103.0
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHHH---hHHHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQEH---LGIIRHGS 77 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E~---~g~~~~~a 77 (203)
.+.+.++|.-.-|.-|++...-+++.+..+.+.++++.++ ...+-+|.|.-.+ |.++...... ......+.
T Consensus 5 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (257)
T PRK05862 5 TILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYI 84 (257)
T ss_pred eEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHH
Confidence 3667777764444444454446899999999999997665 4556677775443 3333221110 11112333
Q ss_pred HHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCchhhhhhHHHH
Q psy5160 78 KLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEKDKSNYEVEY 150 (203)
Q Consensus 78 ~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~~~~e~~~~~ 150 (203)
+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++.-. |. +....+.+. . ....+.++
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-v-G~~~a~~l 158 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAM----MCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRA-V-GKAKAMDL 158 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHH----HCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHH-h-CHHHHHHH
Confidence 456667788999999999999998877765 69999999887765311 21 111111110 0 11112221
Q ss_pred --hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 151 --NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 151 --~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.-+.-++..+.+.|+||+|++++++.+...+..+
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 194 (257)
T PRK05862 159 CLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAAT 194 (257)
T ss_pred HHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHH
Confidence 1223467889999999999998765444444333
No 77
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.54 E-value=2e-05 Score=66.43 Aligned_cols=174 Identities=12% Similarity=0.037 Sum_probs=101.4
Q ss_pred eeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhC-C-CcEEEEecC-----CCCCCcHHH-------HHhHHHH
Q psy5160 9 QSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAF-N-IPIVTFIDV-----PGFLPGLAQ-------EHLGIIR 74 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~-~-lPlv~l~Dt-----~G~~~g~~~-------E~~g~~~ 74 (203)
++..+|.-.-|.-|++.. -+++.+..+.+.++++.+... . ..+|.+.-. .|+++.... +.....+
T Consensus 3 ~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 81 (239)
T PLN02267 3 TLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVA 81 (239)
T ss_pred eeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHH
Confidence 556666444444454532 459999999999999866544 3 345555433 244543211 0011223
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecC-CCee-------eeeCHHHHHHHHhcCchhhhhh
Q psy5160 75 HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWP-TAEI-------AVMGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 75 ~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~-~a~i-------~v~gp~~~~~i~~~~~~~~~e~ 146 (203)
.+.+++..+.....|+|+.|-|.|+||++..+. .+|+++|++ ++.+ |+..|......+.+. .-....
T Consensus 82 ~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lal----acD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~-vG~~~a 156 (239)
T PLN02267 82 KLRPLVADLISLPMPTIAAVTGHASAAGFILAL----SHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAK-IGSPAA 156 (239)
T ss_pred HHHHHHHHHhcCCCCEEEEECCcchHHHHHHHH----HCCEEEecCCCCeEeccccccCCCCChHHHHHHHHH-cChHHH
Confidence 344566677788999999999999999887765 699999985 4444 343354443333221 001111
Q ss_pred HHH--HhhhcCCHHHHHHcCCcceecCC-cchHHHHHHHHHHhhc
Q psy5160 147 EVE--YNDKFRSPVAAAKKGYIDDIIEP-RTTRMRIAQDLKFLLN 188 (203)
Q Consensus 147 ~~~--~~~~~~~~~~~~~~G~iD~Vi~p-~~tR~~l~~~L~~l~~ 188 (203)
..+ +.-..-++..+.+.|+||+|+++ +++.+...+..+.+..
T Consensus 157 ~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~ 201 (239)
T PLN02267 157 RRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAA 201 (239)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhh
Confidence 012 11222467889999999999985 4555544444444433
No 78
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.6e-05 Score=67.68 Aligned_cols=173 Identities=11% Similarity=0.047 Sum_probs=101.0
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC------CCCCcHHHHH--hH-HHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP------GFLPGLAQEH--LG-IIRHG 76 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~------G~~~g~~~E~--~g-~~~~~ 76 (203)
.+.++++|.-.-|.-|+|..--+++.+..+.+.++++.++ ...+-+|.|.=.+ |.++...... .+ .....
T Consensus 5 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (259)
T PRK06494 5 FSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGF 84 (259)
T ss_pred eeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHH
Confidence 4677777754445555554334899999999999998665 4556666664333 2233211100 00 01112
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~ 149 (203)
.. +..+.....|+|+.|-|.|+||++.... .||++++.+++.++. ..+-+....+.+. -....+.+
T Consensus 85 ~~-~~~~~~~~kPvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vg~~~a~~ 157 (259)
T PRK06494 85 GG-LTSRFDLDKPIIAAVNGVAMGGGFELAL----ACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQ--IGLKRAMG 157 (259)
T ss_pred HH-HHHHhcCCCCEEEEECCEEecHHHHHHH----hCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHH--cCHHHHHH
Confidence 22 2233467899999999999998877765 699999998887664 2111111111110 01111222
Q ss_pred H--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+ .-+.-++.++.+.|+||.|++++++.+...+..+.+
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 196 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDI 196 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHH
Confidence 1 122246778999999999999876655544444444
No 79
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.3e-05 Score=67.94 Aligned_cols=169 Identities=10% Similarity=0.057 Sum_probs=96.2
Q ss_pred eeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHHH--hH---HHHHHHH
Q psy5160 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQEH--LG---IIRHGSK 78 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E~--~g---~~~~~a~ 78 (203)
++.+|.-.-|.-|+|...-+++.+..+.+.++++.+. ...+-+|.|.-.+ |.++...... .. ......+
T Consensus 3 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK06563 3 RERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGID 82 (255)
T ss_pred EEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhH
Confidence 4455543344445554446899999999999997654 4455666664432 3343211110 00 1111122
Q ss_pred HHH-HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHHHHHHHhcCchhhhhhHHH--
Q psy5160 79 LLY-AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKGAVAILYRKEKDKSNYEVE-- 149 (203)
Q Consensus 79 ~~~-a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~~~~i~~~~~~~~~e~~~~-- 149 (203)
.+. .+....+|+|+.|-|.|+||++.... .||+++|.+++.++.- .|............ ....+.+
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v-G~~~a~~l~ 157 (255)
T PRK06563 83 PWGTVGRRLSKPLVVAVQGYCLTLGIELML----AADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAA-GWGNAMRYL 157 (255)
T ss_pred HHHHHHhcCCCCEEEEEcCeeecHHHHHHH----hCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHh-hHHHHHHHH
Confidence 222 35678999999999999998877765 6999999999877641 12111111000000 1111222
Q ss_pred HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHH
Q psy5160 150 YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDL 183 (203)
Q Consensus 150 ~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L 183 (203)
+.-..-++.++.+.|+||+|++++++.+...+..
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK06563 158 LTGDEFDAQEALRLGLVQEVVPPGEQLERAIELA 191 (255)
T ss_pred HcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHH
Confidence 1222346788999999999999876544433333
No 80
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.6e-05 Score=67.41 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=98.6
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH---h---HHHHHHHHHH
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH---L---GIIRHGSKLL 80 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~---~---g~~~~~a~~~ 80 (203)
+|.-.-|.-|++.. -+++.+....+.++++.+++ .++-+|.|.-.+ |.++...... . ...+...+++
T Consensus 9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK07938 9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAF 87 (249)
T ss_pred CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHH
Confidence 44333333444433 78999999999999986654 455566654322 3444321110 0 1112234566
Q ss_pred HHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCH-----HHHHHHHhcCchhhhhhHHH--Hhhh
Q psy5160 81 YAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGS-----KGAVAILYRKEKDKSNYEVE--YNDK 153 (203)
Q Consensus 81 ~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp-----~~~~~i~~~~~~~~~e~~~~--~~~~ 153 (203)
..+....+|+|+.|-|.|+||++.... .||++++.+++.++.-.- .....+...- ....+.+ +.-.
T Consensus 88 ~~i~~~~kPvIAav~G~a~GgG~~Lal----~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~v---g~~~a~~l~ltg~ 160 (249)
T PRK07938 88 RAVYECAVPVIAAVHGFCLGGGIGLVG----NADVIVASDDATFGLPEVDRGALGAATHLQRLV---PQHLMRALFFTAA 160 (249)
T ss_pred HHHHhCCCCEEEEEcCEEeehHHHHHH----hCCEEEEeCCCEeeCccceecCchhHHHHHHhc---CHHHHHHHHHhCC
Confidence 677789999999999999998887765 699999998876653111 1111111110 1111122 1222
Q ss_pred cCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 154 FRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 154 ~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 161 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 193 (249)
T PRK07938 161 TITAAELHHFGSVEEVVPRDQLDEAALEVARKI 193 (249)
T ss_pred cCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHH
Confidence 346788999999999999877655555544443
No 81
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.2e-05 Score=68.17 Aligned_cols=172 Identities=14% Similarity=0.110 Sum_probs=101.7
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHH------HHhHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQ------EHLGIIRH 75 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~------E~~g~~~~ 75 (203)
+.++++|.-.-|.-|++.. .+++.+..+.+.++++.+. ...+-+|.|.-.+ |.++.... +.......
T Consensus 4 i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (257)
T PRK07658 4 LSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL 82 (257)
T ss_pred EEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence 4556666544444444534 7899999999999997664 4566666664322 33432111 00111223
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~~~~e~~~ 148 (203)
..+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++-. |. +....+.+. -....+.
T Consensus 83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vG~~~a~ 156 (257)
T PRK07658 83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAM----SCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRY--VGKAKAL 156 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHH----hCCEEEecCCCcccCcccccCCCCCCcHHHHHHHH--hCHHHHH
Confidence 34566677789999999999999998777764 69999999987665311 11 111111000 0111122
Q ss_pred HH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 149 EY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 149 ~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
++ .-+.-++.++.+.|+||.|++++++-+...+..+.+
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 196 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKI 196 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHH
Confidence 21 122246778999999999999776544444444333
No 82
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=1.2e-05 Score=68.41 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=99.1
Q ss_pred cccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHHHhH--HHHH-
Q psy5160 5 KSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQEHLG--IIRH- 75 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E~~g--~~~~- 75 (203)
++.+.++++|.-.-|.-|++...-+++.+..+.+.+.++.+++ ..+=+|.|.-. .|.++........ ....
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (254)
T PRK08259 2 SMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSG 81 (254)
T ss_pred CceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhh
Confidence 3457778877544444455544468999999999999986654 44445555322 2333321111000 0000
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHH-HH-HHHhcCchhhhhhH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKG-AV-AILYRKEKDKSNYE 147 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~-~~-~i~~~~~~~~~e~~ 147 (203)
...+........+|+|+.|-|.|+||++.... .||+++|.+++.++.. .|.. .. .+...- ....+
T Consensus 82 ~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i---G~~~a 154 (254)
T PRK08259 82 DGPMGPSRMRLSKPVIAAVSGYAVAGGLELAL----WCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLI---GHSRA 154 (254)
T ss_pred cchhhhHHhcCCCCEEEEECCEEEhHHHHHHH----hCCEEEecCCCEecCcccccCCCCCccHHHHHHHHh---CHHHH
Confidence 01112222367899999999999998887765 6999999999876542 1211 11 111100 11111
Q ss_pred HH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 148 VE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 148 ~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.+ +....-++.++.+.|+||+|++++++.+...+..+
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 193 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAA 193 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHH
Confidence 22 11222467889999999999998765554444443
No 83
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2e-05 Score=67.08 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=103.6
Q ss_pred cceeee-CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCCC--C----CCcHHH-----HHhHHH
Q psy5160 7 GLQSSE-KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVPG--F----LPGLAQ-----EHLGII 73 (203)
Q Consensus 7 ~~~~~i-~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~G--~----~~g~~~-----E~~g~~ 73 (203)
.+.+++ ++.-.-|.=|++...-+++.+....+.++++.++ ...+-+|.|.-.++ | ++.... +.....
T Consensus 4 ~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07657 4 NISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAV 83 (260)
T ss_pred eEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHH
Confidence 455665 3333333444443446899999999999997665 45566666654442 2 222110 111122
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhh
Q psy5160 74 RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 74 ~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~ 146 (203)
..+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.+++ ..+-+....+.+. -....
T Consensus 84 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~--vG~~~ 157 (260)
T PRK07657 84 SLIRTTMEMVEQLPQPVIAAINGIALGGGLELAL----ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRL--IGVGR 157 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHH----hCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHH--hCHHH
Confidence 3344566677788999999999999999887775 699999998876653 2222212111110 01111
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
+.++ .-+.-++.++.+.|+||.|++++++.+...+..+.+
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 199 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKI 199 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHH
Confidence 1221 122246788999999999999877655544444444
No 84
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.50 E-value=1.8e-05 Score=66.05 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=97.8
Q ss_pred EeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHH-----HHhHHHHHHHHHHHHHHhCCCC
Q psy5160 21 KLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQ-----EHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 21 a~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~-----E~~g~~~~~a~~~~a~~~~~vP 89 (203)
-|++.. -+++.+....+.+.++..+ ..++-+|.|.-.+ |+++.... +..-..+...+++..+....+|
T Consensus 23 lnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP 101 (222)
T PRK05869 23 LSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKP 101 (222)
T ss_pred ECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCC
Confidence 333433 6899999999999987554 5667777665322 33432211 1011122334566777889999
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHH-HHHHhcCchhhhhhHHH--HhhhcCCHHH
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGA-VAILYRKEKDKSNYEVE--YNDKFRSPVA 159 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~-~~i~~~~~~~~~e~~~~--~~~~~~~~~~ 159 (203)
+|+.|-|.|+||++.... .||+++|.+++.++. ..+-.. ..+.++- ....+.+ +.-+.-++..
T Consensus 102 vIAav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i---g~~~a~~l~ltg~~~~a~e 174 (222)
T PRK05869 102 TVAAITGYALGAGLTLAL----AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA---GPSRAKELVFSGRFFDAEE 174 (222)
T ss_pred EEEEEcCEeecHHHHHHH----hCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh---CHHHHHHHHHcCCCcCHHH
Confidence 999999999998777765 699999998877654 222211 1222111 1111222 1222346788
Q ss_pred HHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 160 AAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 160 ~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
+.+.|++|+|++++++.+...+..+.+.
T Consensus 175 A~~~Glv~~vv~~~~l~~~a~~~a~~ia 202 (222)
T PRK05869 175 ALALGLIDEMVAPDDVYDAAAAWARRFL 202 (222)
T ss_pred HHHCCCCCEeeCchHHHHHHHHHHHHHH
Confidence 9999999999998776665555554443
No 85
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=1.6e-05 Score=67.41 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=100.4
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHHHhHHHHHHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQEHLGIIRHGSKLL 80 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E~~g~~~~~a~~~ 80 (203)
.+.++++|.-.-|.-|+|..--+++.+..+.+.+.++.++ ...+-+|.|.-++ |.++....+.... ....+.+
T Consensus 4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~~~ 82 (254)
T PRK08252 4 EVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERP-SIPGRGF 82 (254)
T ss_pred eEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccch-hhhHHHH
Confidence 4667777755555555554446899999999999997664 4567777775332 3333211110000 0001111
Q ss_pred HH--HHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHHH-
Q psy5160 81 YA--YAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVEY- 150 (203)
Q Consensus 81 ~a--~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~~- 150 (203)
.. .....+|+|+.|-|.|+||+..... .+|++++.+++.++. ..+-+....+.+. -....+.++
T Consensus 83 ~~~~~~~~~kPvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~--vg~~~a~~l~ 156 (254)
T PRK08252 83 GGLTERPPRKPLIAAVEGYALAGGFELAL----ACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRR--IPYHIAMELA 156 (254)
T ss_pred HHHHHhcCCCCEEEEECCEEehHHHHHHH----hCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHH--cCHHHHHHHH
Confidence 11 1357899999999999998777664 699999999887653 2111211111100 011122222
Q ss_pred -hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 151 -NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 151 -~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
..+.-++.++.+.|+||.|+++++..+...+..+.+
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 193 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEPGQALDAALELAERI 193 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Confidence 122346788999999999999876555444444433
No 86
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=1.1e-05 Score=69.35 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=103.0
Q ss_pred ccccce---eee-CCeEEEEEEe-CCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcHHHH----
Q psy5160 4 YKSGLQ---SSE-KFNLIQILKL-NPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGLAQE---- 68 (203)
Q Consensus 4 ~~~~~~---~~i-~Gr~V~vva~-d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~~~E---- 68 (203)
|.|-.+ +.. ++. |+++-- ++..--+++.+..+.+.++++.+++ ..+-+|.|.-. .|+++.....
T Consensus 4 ~~~~~~~v~~~~~~~~-v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~ 82 (276)
T PRK05864 4 YRSTMSLVLVDHPRPE-IALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHV 82 (276)
T ss_pred CCCCCCceEEeeecCC-EEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccc
Confidence 554443 554 443 554444 4434468999999999999976654 45666666432 2344321100
Q ss_pred ------H--hHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHH-H
Q psy5160 69 ------H--LGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKG-A 132 (203)
Q Consensus 69 ------~--~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~-~ 132 (203)
. ....+.+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.++ +..|.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~Lal----acD~ria~~~a~f~~pe~~~Gl~p~~~g~ 158 (276)
T PRK05864 83 EGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL----AADIRVASSSAYFRAAGINNGLTASELGL 158 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHH----hCCEEEeeCCCEecCcccccCCCCCCcch
Confidence 0 01122334556667788999999999999998887765 69999999987654 332221 1
Q ss_pred HHHHhcCchhhhhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 133 VAILYRKEKDKSNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 133 ~~i~~~~~~~~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
...+.+ .-....+.+ +.-+.-++.++.+.|+||+|++++++.+...+..+.+
T Consensus 159 ~~~l~~--~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 212 (276)
T PRK05864 159 SYLLPR--AIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARM 212 (276)
T ss_pred heehHh--hhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHH
Confidence 111111 001111222 1222246788999999999999876555444444433
No 87
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=1.4e-05 Score=69.25 Aligned_cols=173 Identities=9% Similarity=0.050 Sum_probs=101.6
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHH---HHH---------
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLA---QEH--------- 69 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~---~E~--------- 69 (203)
++++++|.-.-|.-|++...-+++.+..+.+.++++.++ ...+=+|.|.=.+ |.++... .+.
T Consensus 6 v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 85 (288)
T PRK08290 6 VRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPT 85 (288)
T ss_pred EEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccc
Confidence 566677764444444444457899999999999997664 4556666663222 3343211 000
Q ss_pred -----------hH-H---HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------ee
Q psy5160 70 -----------LG-I---IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VM 127 (203)
Q Consensus 70 -----------~g-~---~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~ 127 (203)
.. . ...+-.++..+....+|+|+.|-|.|+||++.... .||++|+.+++.++ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lal----acD~ria~e~a~f~~pe~~lGl~ 161 (288)
T PRK08290 86 LWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAW----VCDLIVASDDAFFSDPVVRMGIP 161 (288)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHH----hCCEEEeeCCCEecCcccccCcC
Confidence 00 0 11122344556788999999999999998877765 69999998887544 32
Q ss_pred CHHHHHHHHhcCchhhhhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhc
Q psy5160 128 GSKGAVAILYRKEKDKSNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLN 188 (203)
Q Consensus 128 gp~~~~~i~~~~~~~~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~ 188 (203)
+ ....... ..-....+.+ +.-+.-++..+.+.|+||+|++++++.+...+..+.+.+
T Consensus 162 ~---~~~~~l~-~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~ 220 (288)
T PRK08290 162 G---VEYFAHP-WELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAA 220 (288)
T ss_pred c---chHHHHH-HHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHh
Confidence 1 1111000 0001111222 222234678899999999999987766655555554443
No 88
>PLN02600 enoyl-CoA hydratase
Probab=98.45 E-value=4.6e-05 Score=64.56 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=93.7
Q ss_pred eCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecC------CCCCCcHHH-----HHhHHHHHHHHHHHHHHhCCCC
Q psy5160 22 LNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDV------PGFLPGLAQ-----EHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 22 ~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt------~G~~~g~~~-----E~~g~~~~~a~~~~a~~~~~vP 89 (203)
|++..--+++.+..+.+.++++.++ ...+-+|.|.-. .|.++.... +..........++..+.....|
T Consensus 11 nrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 90 (251)
T PLN02600 11 DRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIP 90 (251)
T ss_pred cCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3443335899999999999887664 445667776532 233332111 1111222234456667788999
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHHH-HHHHhcCchhhhhhHHH--HhhhcCCHHHH
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKGA-VAILYRKEKDKSNYEVE--YNDKFRSPVAA 160 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~~-~~i~~~~~~~~~e~~~~--~~~~~~~~~~~ 160 (203)
+|+.|-|.|+||++.... .+|+++|.+++.++.- -|... ...+.+. . ....+.+ +.-+.-++..+
T Consensus 91 vIAav~G~a~GgG~~lal----a~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-~-G~~~a~~l~ltg~~~~a~eA 164 (251)
T PLN02600 91 TIAVVEGAALGGGLELAL----SCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRL-V-GRSRAKELIFTGRRIGAREA 164 (251)
T ss_pred EEEEecCeecchhHHHHH----hCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHH-h-CHHHHHHHHHhCCccCHHHH
Confidence 999999999998877765 6999999999877641 12111 1111100 0 1111122 11223467789
Q ss_pred HHcCCcceecCCcchHHHHHHHHH
Q psy5160 161 AKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 161 ~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.+.|+||.|++++++.+...+..+
T Consensus 165 ~~~Glv~~vv~~~~~~~~a~~~a~ 188 (251)
T PLN02600 165 ASMGLVNYCVPAGEAYEKALELAQ 188 (251)
T ss_pred HHcCCCcEeeChhHHHHHHHHHHH
Confidence 999999999998776554444333
No 89
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.44 E-value=3.9e-05 Score=65.08 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=96.6
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHH--HHhHHHHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQ--EHLGIIRHGSKL 79 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~--E~~g~~~~~a~~ 79 (203)
+.+.++|.-+-|.-|+|. .-+++......+.+.++.+++ ..+-+|.|.-.+ |.++.... +.....+...++
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 81 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL 81 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence 456677753334444443 268999999999999976654 455666664322 33433110 101122334456
Q ss_pred HHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhhhhHHHH--
Q psy5160 80 LYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKSNYEVEY-- 150 (203)
Q Consensus 80 ~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~e~~~~~-- 150 (203)
+..+....+|+|+.|-|.|+||++.... .||++++.+++.+++ ..| .....+.+. . ....+.++
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~-v-g~~~a~~l~l 154 (251)
T TIGR03189 82 VIAMLDSPVPILVAVRGQCLGGGLEVAA----AGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPER-M-GRVAAEDLLY 154 (251)
T ss_pred HHHHHhCCCCEEEEecCeeeeHHHHHHH----hCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHH-h-CHHHHHHHHH
Confidence 6677788999999999999998877765 699999999887654 222 222212110 0 11112222
Q ss_pred hhhcCCHHHHHHcCCcceecCCcc
Q psy5160 151 NDKFRSPVAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 151 ~~~~~~~~~~~~~G~iD~Vi~p~~ 174 (203)
.-+.-++..+.+.|+||+|+++.+
T Consensus 155 tg~~~~a~eA~~~Glv~~v~~~~~ 178 (251)
T TIGR03189 155 SGRSIDGAEGARIGLANAVAEDPE 178 (251)
T ss_pred cCCCCCHHHHHHCCCcceecCcHH
Confidence 122246788999999999998643
No 90
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=2.9e-05 Score=65.71 Aligned_cols=157 Identities=12% Similarity=0.041 Sum_probs=94.4
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH-----hHHHHHH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH-----LGIIRHG 76 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~-----~g~~~~~ 76 (203)
+.+++++.-.-|.-|+|..--+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++....+. ....+..
T Consensus 5 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK05870 5 VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRI 84 (249)
T ss_pred EEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHH
Confidence 5566666544444455544468999999999999986654 556666665432 3333221110 1122333
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhc-------CchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYR-------KEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~-------~~~~~~e~~~~ 149 (203)
.+.+..+.....|+|+.|-|.|+||++.... .||++++.+++.+++ |+.-..+... ...-....+.+
T Consensus 85 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~--pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 85 YDGFLAVASCPLPTIAAVNGAAVGAGLNLAL----AADVRIAGPKALFDA--RFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred HHHHHHHHhCCCCEEEEECCEeEchhHHHHH----hCCEEEEcCCCEEeC--cccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 4456667789999999999999998777765 699999999987653 2211111000 00001111222
Q ss_pred H--hhhcCCHHHHHHcCCcceec
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDII 170 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi 170 (203)
+ .-..-++.++.+.|+||+|+
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH
Confidence 1 12224677899999999999
No 91
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.42 E-value=7.1e-06 Score=64.58 Aligned_cols=89 Identities=22% Similarity=0.243 Sum_probs=68.0
Q ss_pred cccCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAF--NIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAV 105 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~--~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~ 105 (203)
|.+++...+.+.+.++.+.+. --+|+.-+|++|..+... ..+..++...+.|+++.+.|.|.+++++.
T Consensus 6 g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~----------~~i~~~l~~~~kpvva~~~g~~~s~g~~l 75 (161)
T cd00394 6 GVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG----------MNIVDALQASRKPVIAYVGGQAASAGYYI 75 (161)
T ss_pred eEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH----------HHHHHHHHHhCCCEEEEECChhHHHHHHH
Confidence 677888888888888876553 367777789998754211 22333455566999999999999988888
Q ss_pred hhccCCCcceEEecCCCeeeeeCHH
Q psy5160 106 MSEKNLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 106 ~~~~~~~~d~~~a~~~a~i~v~gp~ 130 (203)
.. .+|.+++.|++.+++.||.
T Consensus 76 a~----~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 76 AT----AANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred Hh----CCCEEEECCCCEEEEeeeE
Confidence 76 6999999999999987774
No 92
>PLN02921 naphthoate synthase
Probab=98.40 E-value=5e-05 Score=67.08 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=101.1
Q ss_pred ceeeeC-CeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC------CCCCcHHHHH--h--HHHH
Q psy5160 8 LQSSEK-FNLIQILK-LNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP------GFLPGLAQEH--L--GIIR 74 (203)
Q Consensus 8 ~~~~i~-Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~------G~~~g~~~E~--~--g~~~ 74 (203)
+....+ .-.|+++- |++...-+++.+....+.++++.++ ...+-+|.|.-.+ |.++....+. . ....
T Consensus 67 i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~ 146 (327)
T PLN02921 67 IIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAG 146 (327)
T ss_pred EEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHH
Confidence 455552 22344444 4444446899999999999998665 4556666665433 2333211100 0 0011
Q ss_pred H--HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-------HHHHHHhcCchhhhh
Q psy5160 75 H--GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK-------GAVAILYRKEKDKSN 145 (203)
Q Consensus 75 ~--~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~-------~~~~i~~~~~~~~~e 145 (203)
. ..+++..+....+|+|+.|-|.|+||++.... .+|+++|.+++.++...+. .....+.+. -...
T Consensus 147 ~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~Lal----acD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rl--iG~~ 220 (327)
T PLN02921 147 RLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHM----VCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARL--VGQK 220 (327)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHH----hCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHH--hCHH
Confidence 1 12345566788999999999999998877764 6999999999887653221 111111110 0111
Q ss_pred hHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 146 YEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 146 ~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.+.++ .-+.-++..+.+.|+||+|++++++.+...+..+.+
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 263 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREI 263 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHH
Confidence 22222 122346788999999999999876655544444433
No 93
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.40 E-value=7.7e-05 Score=64.30 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=100.1
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC---CCCCcHH-HHH----------hH
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP---GFLPGLA-QEH----------LG 71 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~---G~~~g~~-~E~----------~g 71 (203)
.+++.++.-.|+++--|...--+++.+..+.+.++++..++ ..+=+|.|.-.+ .|..|.+ .|. ..
T Consensus 12 ~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~ 91 (278)
T PLN03214 12 GVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAE 91 (278)
T ss_pred ceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHH
Confidence 45666632345555554222368999999999999976654 455566664322 1332211 110 00
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHH-HHHHHHhcCchhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSK-GAVAILYRKEKDK 143 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~-~~~~i~~~~~~~~ 143 (203)
..+...+++..+.....|+|+.|-|.|+||++.... .||++++.+++.+++ .-|. .....+.+. . .
T Consensus 92 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~-~-G 165 (278)
T PLN03214 92 FWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSL----CCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRV-I-D 165 (278)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHH----hCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHh-c-C
Confidence 111112355567788999999999999998887775 699999999887664 1121 111111000 0 1
Q ss_pred hhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 144 SNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 144 ~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
...+.++. -+.-++.++.+.|+||.|++++++.+...+..+.+
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 210 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERA 210 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHH
Confidence 11122211 12246778999999999999776555444444433
No 94
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.40 E-value=8.7e-06 Score=67.05 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDA--FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.+|.++...+..+.+-+...+. ..-||.+.+||||..+. + +-.++..+...+.|+++++.|.|++.+.
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~---~-------g~~I~d~i~~~~~~v~t~~~G~aaS~a~ 105 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVT---A-------GLAIYDTMQFIKPDVSTICIGQAASMGA 105 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHH---H-------HHHHHHHHHhcCCCEEEEEEeEeccHHH
Confidence 6799999998888777765554 35799999999997542 1 1244555666778999999999998666
Q ss_pred hhhhccCCCcceEEecCCCeeeeeCHHHHH-----HHH-hcCc-----------------hhhhhhHHHHh-hhcCCHHH
Q psy5160 104 AVMSEKNLRSDVNYAWPTAEIAVMGSKGAV-----AIL-YRKE-----------------KDKSNYEVEYN-DKFRSPVA 159 (203)
Q Consensus 104 ~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~-----~i~-~~~~-----------------~~~~e~~~~~~-~~~~~~~~ 159 (203)
..+.. -..+.+++.|++.+++..|.+.. .+- ..+. ...++..+... +...++.+
T Consensus 106 ~I~~a--g~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~E 183 (200)
T PRK00277 106 FLLAA--GAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEE 183 (200)
T ss_pred HHHhc--CCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHH
Confidence 55531 12457999999999988774221 000 0000 00111112111 23457889
Q ss_pred HHHcCCcceecCC
Q psy5160 160 AAKKGYIDDIIEP 172 (203)
Q Consensus 160 ~~~~G~iD~Vi~p 172 (203)
+.+.|+||+|++.
T Consensus 184 A~e~GliD~Ii~~ 196 (200)
T PRK00277 184 AKEYGLIDEVLTK 196 (200)
T ss_pred HHHcCCccEEeec
Confidence 9999999999984
No 95
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=3.3e-05 Score=65.69 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=97.5
Q ss_pred ccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH-----HhHHH-
Q psy5160 6 SGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE-----HLGII- 73 (203)
Q Consensus 6 ~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E-----~~g~~- 73 (203)
.-+.++++|.-.-|.-|++..-.+++....+.+.++++.+++ ..+-+|.|.-.+ |.++....+ .....
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (262)
T PRK07509 3 DRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFK 82 (262)
T ss_pred ceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhh
Confidence 346778887655555555544468999999999999987654 445566664322 333321110 00111
Q ss_pred ------HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HHH-HHHHHhcCc
Q psy5160 74 ------RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SKG-AVAILYRKE 140 (203)
Q Consensus 74 ------~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~~-~~~i~~~~~ 140 (203)
....+++..+.....|+|+.|-|.|+||++.... .||+++|.+++.++... |.. ....+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lal----acD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~- 157 (262)
T PRK07509 83 RLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIAL----GADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGL- 157 (262)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHH----hCCEEEecCCCEeecchhccCCCCCchHHHHHHHH-
Confidence 1122344455678999999999999998777765 69999999998776532 221 11111110
Q ss_pred hhhhhhHHHH--hhhcCCHHHHHHcCCcceecCC
Q psy5160 141 KDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEP 172 (203)
Q Consensus 141 ~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p 172 (203)
. ....+.++ .-+.-++..+.+.|+||+|+++
T Consensus 158 ~-g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 158 V-RKDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred h-CHHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 0 11112221 1222467889999999999974
No 96
>PRK08321 naphthoate synthase; Validated
Probab=98.38 E-value=5.5e-05 Score=65.92 Aligned_cols=169 Identities=13% Similarity=0.060 Sum_probs=98.2
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEec------------CCCCCCcHHHH-----------
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFID------------VPGFLPGLAQE----------- 68 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~D------------t~G~~~g~~~E----------- 68 (203)
+|.-+-|--|+|..-.+++.+....+.++++.++ ...+-+|.|.= +.|.++....+
T Consensus 32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA 111 (302)
T ss_pred CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence 5433334444444446899999999999998664 45566666642 33444431100
Q ss_pred H-hHHHH----HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEec-CCCeeeee-------CHHHHHHH
Q psy5160 69 H-LGIIR----HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAW-PTAEIAVM-------GSKGAVAI 135 (203)
Q Consensus 69 ~-~g~~~----~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~-~~a~i~v~-------gp~~~~~i 135 (203)
. ....+ ...+++..+.....|+|+.|-|.|+||++.... .||++++. +++.+++. .|-.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lal----acD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~ 187 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHV----VCDLTLASREHARFKQTDADVGSFDGGYGSAY 187 (302)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHH----hCCEEEEecCCCEEECCccccccCCCchHHHH
Confidence 0 00000 111234456678999999999999998877765 69999999 57776642 12111111
Q ss_pred HhcCchhhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 136 LYRKEKDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 136 ~~~~~~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
+-+. -....+.++ .-+.-++..+.+.|+||.|++++++.+...+..+.+.
T Consensus 188 L~r~--vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 239 (302)
T PRK08321 188 LARQ--VGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREIN 239 (302)
T ss_pred HHHH--hCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHH
Confidence 1110 011112222 1222467889999999999998776665554444443
No 97
>PLN02888 enoyl-CoA hydratase
Probab=98.37 E-value=5.7e-05 Score=64.58 Aligned_cols=170 Identities=16% Similarity=0.113 Sum_probs=97.3
Q ss_pred ceeee-CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH-hH-HHHHHHH
Q psy5160 8 LQSSE-KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH-LG-IIRHGSK 78 (203)
Q Consensus 8 ~~~~i-~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~-~g-~~~~~a~ 78 (203)
+.++. +|.-.-|.=|++..--+++.+..+.+.++++.+++ ..+-+|.|.-.+ |.++....+. .+ ......+
T Consensus 11 i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T PLN02888 11 ILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETD 90 (265)
T ss_pred EEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHH
Confidence 44554 34333333344433468999999999999976654 455566664322 2333211110 01 1111234
Q ss_pred HHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC-------HHHHHHHHhcCchhhhhhHHH--
Q psy5160 79 LLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG-------SKGAVAILYRKEKDKSNYEVE-- 149 (203)
Q Consensus 79 ~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g-------p~~~~~i~~~~~~~~~e~~~~-- 149 (203)
++..+....+|+|+.|-|.|+||++.... .||++++.+++.++... +-+....+.+. . ....+.+
T Consensus 91 ~~~~i~~~~kPvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~-v-G~~~a~~l~ 164 (265)
T PLN02888 91 PVAQMERCRKPIIGAINGFAITAGFEIAL----ACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRI-I-GANRAREVS 164 (265)
T ss_pred HHHHHHhCCCCEEEEECCeeechHHHHHH----hCCEEEecCCCEecCccccccCCCCccHhhHHHHH-h-CHHHHHHHH
Confidence 55566788999999999999998877765 69999999988765421 11111111100 0 1111122
Q ss_pred HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHH
Q psy5160 150 YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDL 183 (203)
Q Consensus 150 ~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L 183 (203)
+.-+.-++.++.+.|+||+|++++++.+...+..
T Consensus 165 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (265)
T PLN02888 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVA 198 (265)
T ss_pred HhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence 1222346788999999999999876554443333
No 98
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.35 E-value=5.9e-06 Score=68.42 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=89.3
Q ss_pred CCcccCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDAF--NIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~~--~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.+|.++...+..+.+.+...+.. .-||.+.+||||..+. + +-.++.++.....|+++++.|.|.+.+.
T Consensus 40 l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~---~-------g~~I~d~i~~~~~~v~t~~~G~aaSaa~ 109 (207)
T PRK12553 40 LGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVT---A-------GDAIYDTIQFIRPDVQTVCTGQAASAGA 109 (207)
T ss_pred EcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHH---H-------HHHHHHHHHhcCCCcEEEEEeehhhHHH
Confidence 57889999999988888766543 6899999999997532 2 2345556666778999999999988666
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHH--H-----HHHH-------Hh-----------cCchhhhhhHHHHh-hhcC
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSK--G-----AVAI-------LY-----------RKEKDKSNYEVEYN-DKFR 155 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~--~-----~~~i-------~~-----------~~~~~~~e~~~~~~-~~~~ 155 (203)
+.+. .+| .++|.|++.+.+-.|. + +..+ .. +.....++..+... +..-
T Consensus 110 lI~~----ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~l 185 (207)
T PRK12553 110 VLLA----AGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWL 185 (207)
T ss_pred HHHH----cCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccc
Confidence 6654 355 5899999998888775 1 1110 00 00000111112111 2335
Q ss_pred CHHHHHHcCCcceecCC
Q psy5160 156 SPVAAAKKGYIDDIIEP 172 (203)
Q Consensus 156 ~~~~~~~~G~iD~Vi~p 172 (203)
++.++.+.|+||.|++.
T Consensus 186 ta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 186 TAEEAKDYGLVDQIITS 202 (207)
T ss_pred cHHHHHHcCCccEEcCc
Confidence 78899999999999983
No 99
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.28 E-value=0.00012 Score=62.17 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=106.7
Q ss_pred eeeeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCcHHHH---H---hHHHHH
Q psy5160 9 QSSEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAF-NIPIVTFIDVP-----GFLPGLAQE---H---LGIIRH 75 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~-~lPlv~l~Dt~-----G~~~g~~~E---~---~g~~~~ 75 (203)
.....+. |+++--|.- ..-+++.+..+.+...++.++.. .+.+|.|.=.+ |.+++...+ . ......
T Consensus 8 ~~~~~~~-v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 86 (257)
T COG1024 8 LVEREDG-IAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP 86 (257)
T ss_pred EEEeeCC-EEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence 3344444 666666543 33689999999999999888765 78888776544 334432110 0 112233
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHHHHHHHhcCchhhhhhHH
Q psy5160 76 GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKGAVAILYRKEKDKSNYEV 148 (203)
Q Consensus 76 ~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~~~~i~~~~~~~~~e~~~ 148 (203)
..+++..+.....|+|+.|-|.|+||++-..- .||++++.++++++ ++.+.+....+.+.- ....+.
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal----~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~--G~~~a~ 160 (257)
T COG1024 87 GQDLLRALADLPKPVIAAVNGYALGGGLELAL----ACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLL--GRGRAK 160 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcceEeechhhhhh----cCCeEEecCCcEecCcccccccCCCCcHHHHHHHhc--CHHHHH
Confidence 34577788899999999999999998776653 69999999887655 333223333322111 112222
Q ss_pred H--HhhhcCCHHHHHHcCCcceecCC-cchHHHHHHHHHHh
Q psy5160 149 E--YNDKFRSPVAAAKKGYIDDIIEP-RTTRMRIAQDLKFL 186 (203)
Q Consensus 149 ~--~~~~~~~~~~~~~~G~iD~Vi~p-~~tR~~l~~~L~~l 186 (203)
+ +....-++.++.+.|+||.++++ +++.+...+..+.+
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 2 22223467889999999999995 46555544444433
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.25 E-value=5.9e-05 Score=62.21 Aligned_cols=89 Identities=18% Similarity=0.155 Sum_probs=60.3
Q ss_pred cccCHHHHHHHHHHHHHHHh-CC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDA-FN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAV 105 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~-~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~ 105 (203)
|.|+ .+.+.+.+.++.+.+ .+ ..||+-+|++|..+....+ +.+.+..+. ...|+++.+-|.|.|++++.
T Consensus 9 g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~-------l~~~i~~~~-~~kpvia~v~g~a~s~g~~l 79 (207)
T TIGR00706 9 GAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEE-------IYEKLKKLK-AKKPVVASMGGVAASGGYYI 79 (207)
T ss_pred EEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHH-------HHHHHHHhc-CCCCEEEEECCccchHHHHH
Confidence 4454 345666777765543 23 5788889999986532222 223332222 46999999999999888887
Q ss_pred hhccCCCcceEEecCCCeeeeeCH
Q psy5160 106 MSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 106 ~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
.. .||.++|.|++.++..|.
T Consensus 80 a~----aaD~i~a~p~a~vg~iGv 99 (207)
T TIGR00706 80 AM----AADEIVANPGTITGSIGV 99 (207)
T ss_pred Hh----cCCEEEECCCCeEEeeeE
Confidence 75 699999999988776544
No 101
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.25 E-value=0.00025 Score=61.56 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=95.0
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh------CCCcEEEEecC------CCCCCcHHHH------HhHHHHH--
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDA------FNIPIVTFIDV------PGFLPGLAQE------HLGIIRH-- 75 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~------~~lPlv~l~Dt------~G~~~g~~~E------~~g~~~~-- 75 (203)
.|+++-.++...-+++.+..+.+.+.++-+++ ..+-+|.|.-. .|.++....+ .......
T Consensus 26 ~ia~itl~p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 105 (287)
T PRK08788 26 NVMWMYMRAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYAR 105 (287)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHH
Confidence 35555556553348999999999999976654 44555666433 2333321110 0011111
Q ss_pred -HHHHHHHHH---hCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchhhh
Q psy5160 76 -GSKLLYAYA---ESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKDKS 144 (203)
Q Consensus 76 -~a~~~~a~~---~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~~~ 144 (203)
.-+.+..+. ....|+|+.|-|.|+||++.... .+|++++.+++.++. ..+-+....+.+. -..
T Consensus 106 ~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~Lal----acD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~--vG~ 179 (287)
T PRK08788 106 ACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAAL----SHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR--VGP 179 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHH----hCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH--hhH
Confidence 111222222 57899999999999998877765 699999999987663 1111121211110 011
Q ss_pred hhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 145 NYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 145 e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
..+.++ .-+.-++..+.+.|+||.|+++.+.-+...+..+.+.
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia 224 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSK 224 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHh
Confidence 222222 2222467789999999999998766555555544444
No 102
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=9.1e-05 Score=63.01 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=95.0
Q ss_pred cceeeeCCeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH--------HhH
Q psy5160 7 GLQSSEKFNLIQILK-LNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE--------HLG 71 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E--------~~g 71 (203)
.+..+++|. |++|- |++..-.+++.+....+.++++.+++ ..+-+|.|.-.+ |.++....+ ...
T Consensus 7 ~i~~~~~~~-v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 85 (260)
T PRK07827 7 LVRYAVDGG-VATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVA 85 (260)
T ss_pred ceEEEeeCC-EEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHH
Confidence 456667664 44444 44434468999999999999986654 455666664333 223321111 011
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCchhhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEKDKS 144 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~~~~ 144 (203)
..+.+.+++..+....+|+|+.|-|.|+||++.... .||++++.+++.+++-. |. +....+.+ . ..
T Consensus 86 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~--l-~~ 158 (260)
T PRK07827 86 RAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVG----ACDIVVAGPESTFALTEARIGVAPAIISLTLLPR--L-SP 158 (260)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHH----hCCEEEEcCCCEEeCcccccCCCCCcccchhHHh--h-hH
Confidence 223345566777789999999999999998887765 69999999888766421 11 11111111 1 01
Q ss_pred hhHHHH--hhhcCCHHHHHHcCCcceecC
Q psy5160 145 NYEVEY--NDKFRSPVAAAKKGYIDDIIE 171 (203)
Q Consensus 145 e~~~~~--~~~~~~~~~~~~~G~iD~Vi~ 171 (203)
..+.++ .-..-++..+.+.|+||+|.+
T Consensus 159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 159 RAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 122222 222246788999999999975
No 103
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.25 E-value=4e-05 Score=63.39 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHh-CCCcE-EEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCC
Q psy5160 34 AAVKSARFIRFCDA-FNIPI-VTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNL 111 (203)
Q Consensus 34 ~~~K~~r~i~~a~~-~~lPl-v~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~ 111 (203)
+.+.+.+.++.+.+ .++-. |+-+|++|..+....| +.+.+..+.+...|+|+.+-|.|.|++++..+
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~-------~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~---- 90 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV-------IRAELAAARAAGKPVVVSAGGAAASGGYWIST---- 90 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHH-------HHHHHHHHHhCCCCEEEEECCeehhHHHHHHH----
Confidence 45667777765544 45444 4448999987643322 23455666677999999999999998888876
Q ss_pred CcceEEecCCCeeeeeC
Q psy5160 112 RSDVNYAWPTAEIAVMG 128 (203)
Q Consensus 112 ~~d~~~a~~~a~i~v~g 128 (203)
.||+++|.|++.++..|
T Consensus 91 ~aD~i~a~~~a~~gsiG 107 (211)
T cd07019 91 PANYIVANPSTLTGSIG 107 (211)
T ss_pred hCCEEEEcCCCEEEEeE
Confidence 69999999998877665
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.22 E-value=2.9e-05 Score=61.83 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=66.6
Q ss_pred CcccCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhh
Q psy5160 27 PGCIDINAAVKSARFIRFCDAF--NIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYA 104 (203)
Q Consensus 27 gG~~~~~~~~K~~r~i~~a~~~--~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~ 104 (203)
.|.++...+..+.+.+..++.. .-||+..+||||..+. + .-.++.++.....|+++++.|.|++++++
T Consensus 6 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~---~-------~~~i~~~i~~~~~~v~~~~~g~aaS~~~~ 75 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVF---A-------GMAIYDTIKFIKADVVTIIDGLAASMGSV 75 (162)
T ss_pred ccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHH---H-------HHHHHHHHHhcCCCceEEEEeehhhHHHH
Confidence 4678888888888877766543 3799999999998642 1 12445555667789999999999987777
Q ss_pred hhhccCCCcc--eEEecCCCeeeeeCHH
Q psy5160 105 VMSEKNLRSD--VNYAWPTAEIAVMGSK 130 (203)
Q Consensus 105 ~~~~~~~~~d--~~~a~~~a~i~v~gp~ 130 (203)
.+. .+| ..++.|++.+.+-.|-
T Consensus 76 i~~----a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 76 IAM----AGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred HHH----cCCCCcEEEecCEEEEEccCc
Confidence 765 466 6788888888876553
No 105
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.21 E-value=7.1e-05 Score=66.42 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=100.1
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------CCCCcHHHHH------h---H
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP------GFLPGLAQEH------L---G 71 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~------G~~~g~~~E~------~---g 71 (203)
+.+.++|.-.-|.-|+|...-+++......+.++++.+++ ..+-+|.|.-.+ |.++....+. . .
T Consensus 5 v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (342)
T PRK05617 5 VLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADR 84 (342)
T ss_pred EEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHH
Confidence 4566777655555566644457999999999999976654 445566665433 3333211110 0 1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCchhhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEKDKS 144 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~~~~ 144 (203)
..+...+++..+.....|+|+.|-|.|+||++.... .||+++|.+++.++.-. |. +....+.+. ..
T Consensus 85 ~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~Lal----acD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~---~g 157 (342)
T PRK05617 85 FFREEYRLNALIARYPKPYIALMDGIVMGGGVGISA----HGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRA---PG 157 (342)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhh----hCCEEEEcCCCEeeCCccccCcCCCccceeEehhc---cc
Confidence 112223455666788999999999999999877764 79999999887766421 11 111111111 01
Q ss_pred hhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHH
Q psy5160 145 NYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMR 178 (203)
Q Consensus 145 e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~ 178 (203)
..+.++ .-+.-++.++.+.|+||.|+++.++...
T Consensus 158 ~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 158 ALGTYLALTGARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 112222 1223467889999999999998876554
No 106
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=0.00013 Score=63.58 Aligned_cols=172 Identities=17% Similarity=0.091 Sum_probs=104.6
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecC-----CCCCCcH-HHH------------
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDV-----PGFLPGL-AQE------------ 68 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt-----~G~~~g~-~~E------------ 68 (203)
+.+.++|.-.-|.-|+|..--+++.+....+.++++.++. ..+-+|.|.-. .|.++.. ..+
T Consensus 7 v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 86 (298)
T PRK12478 7 LLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD 86 (298)
T ss_pred EEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence 5667777655555666644468999999999999986654 56777777533 2445432 000
Q ss_pred -HhHH--H-HH---HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-----HHHHHH
Q psy5160 69 -HLGI--I-RH---GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK-----GAVAIL 136 (203)
Q Consensus 69 -~~g~--~-~~---~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~-----~~~~i~ 136 (203)
.... + .. ....+..+.+..+|+|+.|-|.|+||++.... .||++++.+++.++.--.. ......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal----acD~ria~~~A~f~~pe~~l~G~~~~~~~~ 162 (298)
T PRK12478 87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYAL----CADIVIASDDAVIGTPYSRMWGAYLTGMWL 162 (298)
T ss_pred chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHH----HCCEEEEcCCcEEeccccccccCCchhHHH
Confidence 0000 0 00 01244456788999999999999998887765 7999999999877642111 000011
Q ss_pred hcCchhhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 137 YRKEKDKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 137 ~~~~~~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.+ . ...++.++. -+.-++..+.+.|+||+|++++++.+...+..+.+
T Consensus 163 ~~--v-G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~l 211 (298)
T PRK12478 163 YR--L-SLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATEL 211 (298)
T ss_pred HH--h-hHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence 11 0 122222222 12246778999999999999876655544444433
No 107
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.16 E-value=5.5e-05 Score=62.24 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCcccCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDA--FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
..|.+++..+.-+.+-+...+. ..-||.+.+||||..+. . +-.++.++.....|+++++.|.+++.|.
T Consensus 28 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~---a-------g~aI~d~i~~~~~~V~t~v~G~AaSaas 97 (197)
T PRK14512 28 IAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDID---A-------GFAIFNMIRFVKPKVFTIGVGLVASAAA 97 (197)
T ss_pred ECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHH---H-------HHHHHHHHHhCCCCEEEEEEeeeHhHHH
Confidence 4577888888777766655543 35899999999998642 1 2345555666788999999999988665
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHHHHH-----HHH------hcCc------------hhhhhhHHHHh-hhcCCH
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSKGAV-----AIL------YRKE------------KDKSNYEVEYN-DKFRSP 157 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~~-----~i~------~~~~------------~~~~e~~~~~~-~~~~~~ 157 (203)
+.+. .+| .+++.|++.+.+..|.+.. .+- .+.. ...++..+... +...++
T Consensus 98 lIl~----ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta 173 (197)
T PRK14512 98 LIFL----AAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDS 173 (197)
T ss_pred HHHh----cCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCH
Confidence 5554 244 4788888888877775421 010 0000 00111111111 233578
Q ss_pred HHHHHcCCcceecCC
Q psy5160 158 VAAAKKGYIDDIIEP 172 (203)
Q Consensus 158 ~~~~~~G~iD~Vi~p 172 (203)
.++.+.|++|.|++.
T Consensus 174 ~EA~~yGliD~I~~~ 188 (197)
T PRK14512 174 SSAVKYGLVFEVVET 188 (197)
T ss_pred HHHHHcCCccEeecC
Confidence 899999999999984
No 108
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.16 E-value=5e-05 Score=62.67 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=89.6
Q ss_pred CCcccCHHHHHHHHHHH-HHHHh-CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFI-RFCDA-FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i-~~a~~-~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.+|.++...+..+..-+ .+..+ ..-||...+||||..+. .| -.++.++...+.|+.+++.|-|++.|.
T Consensus 35 l~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~-----~g-----~aIyd~m~~~~~~V~Tv~~G~AaS~as 104 (200)
T CHL00028 35 LGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVI-----SG-----LAIYDTMQFVKPDVHTICLGLAASMAS 104 (200)
T ss_pred ECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchh-----hH-----HHHHHHHHhcCCCEEEEEEEehHHHHH
Confidence 68889999887776544 45433 46899999999997642 12 345666777889999999999998766
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHHHH------HHHHh-cCch-----------------hhhhhHHHHh-hhcCC
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSKGA------VAILY-RKEK-----------------DKSNYEVEYN-DKFRS 156 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~------~~i~~-~~~~-----------------~~~e~~~~~~-~~~~~ 156 (203)
..++ .++ .++|.|++++.+-.|.+. ..+.. .++. ..++..+.+. +...+
T Consensus 105 lIl~----aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lt 180 (200)
T CHL00028 105 FILA----GGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMS 180 (200)
T ss_pred HHHh----CCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC
Confidence 6665 344 689999998887776542 11110 0000 0111112111 23357
Q ss_pred HHHHHHcCCcceecCCcc
Q psy5160 157 PVAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 157 ~~~~~~~G~iD~Vi~p~~ 174 (203)
|.++.+.|+||.|+++.+
T Consensus 181 a~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 181 ATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred HHHHHHcCCCcEEeecCc
Confidence 889999999999998653
No 109
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.12 E-value=8.4e-05 Score=61.57 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCcccCHHHHHHHHHHHHHHH-hCCCcEEEE-ecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCD-AFNIPIVTF-IDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l-~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
++...+......+.+.++.+. ..++-.|.| +|++|..+... ..+.+.+..+.+ ..|+|+.+-|.|.|+++
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~-------~~l~~~l~~~~~-~KpViA~v~g~a~s~gy 89 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV-------FELADAIRAARA-GKPIVAFVNGLAASAAY 89 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHH-------HHHHHHHHHHhc-CCCEEEEECCchhhHHH
Confidence 334455667788888887664 445655555 78888643211 223344444444 79999999999999999
Q ss_pred hhhhccCCCcceEEecCCCeeeeeC
Q psy5160 104 AVMSEKNLRSDVNYAWPTAEIAVMG 128 (203)
Q Consensus 104 ~~~~~~~~~~d~~~a~~~a~i~v~g 128 (203)
+..+ .||.++|.|++.++..|
T Consensus 90 ~lA~----~aD~i~a~~~a~~g~iG 110 (214)
T cd07022 90 WIAS----AADRIVVTPTAGVGSIG 110 (214)
T ss_pred HHHh----cCCEEEEcCCCeEEeee
Confidence 8886 69999999999876444
No 110
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.12 E-value=0.0003 Score=66.16 Aligned_cols=179 Identities=9% Similarity=0.065 Sum_probs=103.8
Q ss_pred cceeeeCCeEEEEEEeCCC----------CCcccCHHHHHHHHHHHHHHH--hCCCcEEEEec------CCCCCCcHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPK----------APGCIDINAAVKSARFIRFCD--AFNIPIVTFID------VPGFLPGLAQE 68 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~----------~gG~~~~~~~~K~~r~i~~a~--~~~lPlv~l~D------t~G~~~g~~~E 68 (203)
-+.++++|.-+-|.-|++. ..-+++.+....+.+.++... ...+.+|.|.- +.|.++.....
T Consensus 12 ~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~ 91 (546)
T TIGR03222 12 HWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGL 91 (546)
T ss_pred eEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhc
Confidence 3677788754444555431 235788999988998887665 45677777762 23444432110
Q ss_pred H-----hHHHHH----HHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCC--Ceeeee-----C--HH
Q psy5160 69 H-----LGIIRH----GSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT--AEIAVM-----G--SK 130 (203)
Q Consensus 69 ~-----~g~~~~----~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~--a~i~v~-----g--p~ 130 (203)
. ...... ...+...+....+|+|+.|-|.|+||++.... .||++++.++ +.+++. | |.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LAL----acD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 92 STHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELAL----ACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHH----hCCEEEEecCCCcEEEccchhccCcCCc
Confidence 0 000011 11233345578999999999999999887765 6999999886 454431 1 11
Q ss_pred H-HHHHHhcCchhhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhcC
Q psy5160 131 G-AVAILYRKEKDKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 131 ~-~~~i~~~~~~~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~ 189 (203)
. ....+-....-...++.++. .+.-++..+.+.|+||+|++++++.+...+..+.+..+
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 1 11111000111122222221 22246778999999999999887776655555544433
No 111
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.08 E-value=0.00069 Score=60.49 Aligned_cols=156 Identities=18% Similarity=0.071 Sum_probs=94.6
Q ss_pred CCeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC------CCCCcHHHH--------HhHHHHHH
Q psy5160 13 KFNLIQILK-LNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP------GFLPGLAQE--------HLGIIRHG 76 (203)
Q Consensus 13 ~Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~------G~~~g~~~E--------~~g~~~~~ 76 (203)
.|--++++- |+|..--+++.+..+.+..+++.+. ...+-+|.|.-.+ |.++....+ .....+.+
T Consensus 34 ~~~~~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~ 113 (360)
T TIGR03200 34 PGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLF 113 (360)
T ss_pred CceEEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHH
Confidence 444555444 4444334799999999999997554 5667788775543 233321111 11112222
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-------HHHHHHhcCchhhhhhHHH
Q psy5160 77 SKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK-------GAVAILYRKEKDKSNYEVE 149 (203)
Q Consensus 77 a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~-------~~~~i~~~~~~~~~e~~~~ 149 (203)
.+++..+.....|+|+.|-|.|+||+..... .||++++.+++.++..... +....+.+. -....+.+
T Consensus 114 ~~l~~~i~~~pKPVIAAVnG~AiGGGleLAL----aCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl--vG~~rA~~ 187 (360)
T TIGR03200 114 NDMVSAILGCDKPVICRVNGMRIGGGQEIGM----AADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLM--IGCEQAMV 187 (360)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeeHHHHHHH----hCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHh--hCHHHHHH
Confidence 3455667788999999999999998877765 6999999999887753221 111111100 01111222
Q ss_pred H--hhhcCCHHHHHHcCCcceecCCcc
Q psy5160 150 Y--NDKFRSPVAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 150 ~--~~~~~~~~~~~~~G~iD~Vi~p~~ 174 (203)
+ .-+.-++..+.+.|+||+|+++.+
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~ 214 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALK 214 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchh
Confidence 1 112246788999999999999754
No 112
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.06 E-value=0.00062 Score=66.00 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=103.6
Q ss_pred cceeee-CCeEEEEEE-eCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHH--------Hh
Q psy5160 7 GLQSSE-KFNLIQILK-LNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQE--------HL 70 (203)
Q Consensus 7 ~~~~~i-~Gr~V~vva-~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E--------~~ 70 (203)
.+++.. +|. |+++- |++..--+++.+....+.++++.+++ ..+-+|.|.-.+ |.++....+ ..
T Consensus 7 ~i~~~~~~~~-v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDG-IAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELS 85 (715)
T ss_pred eEEEEEcCCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHH
Confidence 355653 443 45444 44433458999999999999986654 456666665432 333322111 01
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HHHHHHhcCchhh
Q psy5160 71 GIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GAVAILYRKEKDK 143 (203)
Q Consensus 71 g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~~~i~~~~~~~~ 143 (203)
...+.+.+++..+.....|+|+.|-|.|+||++.... .||++++.+++.++.-. |. +....+.+. -.
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAl----acD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rl--vG 159 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVL----ATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRL--IG 159 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHH----hCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHh--cC
Confidence 1222334566667789999999999999998877765 79999999998776411 11 111111100 01
Q ss_pred hhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 144 SNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 144 ~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
...+.++ .-+.-++.++.+.|+||.|++++++.....+..+.+.
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 205 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAI 205 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHh
Confidence 1112221 1222467889999999999998776655555444443
No 113
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.05 E-value=0.00042 Score=62.40 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=98.8
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-----CCCCcHHHHH----hHHHH--
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDA-FNIPIVTFIDVP-----GFLPGLAQEH----LGIIR-- 74 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~Dt~-----G~~~g~~~E~----~g~~~-- 74 (203)
.+...++|.-.-|.-|++..--+++.+....+.++++.++. ..+-+|.|.-.+ |+++....+. .....
T Consensus 12 ~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 91 (379)
T PLN02874 12 VVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV 91 (379)
T ss_pred ceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence 35566676544455666643358999999999999986654 566777765433 3333211110 01111
Q ss_pred -HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHHHHHHHhcCchhhhhh
Q psy5160 75 -HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKGAVAILYRKEKDKSNY 146 (203)
Q Consensus 75 -~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~~~~i~~~~~~~~~e~ 146 (203)
....++..+.....|+|+.|-|.|+||+..... .||++++.+++.++ +..+-+....+.+.. . ..
T Consensus 92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~Lal----acD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~--g-~~ 164 (379)
T PLN02874 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMV----PMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLP--G-HL 164 (379)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHH----hCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhh--H-HH
Confidence 111234456678999999999999998777664 69999998886655 332222222222111 1 11
Q ss_pred HHHH--hhhcCCHHHHHHcCCcceecCCcchHH
Q psy5160 147 EVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRM 177 (203)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~ 177 (203)
..++ .-..-++.++.+.|+||.|++++++..
T Consensus 165 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 165 GEYLALTGARLNGKEMVACGLATHFVPSEKLPE 197 (379)
T ss_pred HHHHHHcCCcccHHHHHHcCCccEEeCHHHHHH
Confidence 2222 112235678999999999999876654
No 114
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.02 E-value=0.0001 Score=61.73 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCcccCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDA--FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
++|.++...+..+..-+-+-+. .+-||.+.+||||..+. .| -.++.++.....|+.+++.|-+.+.|.
T Consensus 59 l~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~-----aG-----laIyd~m~~~~~~V~tv~~G~AAS~As 128 (221)
T PRK14514 59 LGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVY-----AG-----LGIYDTMQFISSDVATICTGMAASMAS 128 (221)
T ss_pred ECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchh-----hH-----HHHHHHHHhcCCCEEEEEEEEehhHHH
Confidence 6899999999887765543332 35899999999998642 22 235556677788999999999988766
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHHHHH------------HHHhcCc-----------hhhhhhHHHHh-hhcCCH
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSKGAV------------AILYRKE-----------KDKSNYEVEYN-DKFRSP 157 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~~------------~i~~~~~-----------~~~~e~~~~~~-~~~~~~ 157 (203)
..++ .+| .++|.|++.+.+-.|.+.. ++..-.+ ...++..+... +.+.++
T Consensus 129 lIl~----aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA 204 (221)
T PRK14514 129 VLLV----AGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTA 204 (221)
T ss_pred HHHh----cCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCH
Confidence 6665 355 4889999998877775321 1110000 00122222221 234578
Q ss_pred HHHHHcCCcceecCC
Q psy5160 158 VAAAKKGYIDDIIEP 172 (203)
Q Consensus 158 ~~~~~~G~iD~Vi~p 172 (203)
.++.+.|+||.|++.
T Consensus 205 ~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 205 QEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHHcCCccEEeec
Confidence 999999999999974
No 115
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.02 E-value=0.00052 Score=58.05 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=88.9
Q ss_pred eeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-----CCCCcHHHHH--hHHHHHHHHHHH
Q psy5160 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAF-NIPIVTFIDVP-----GFLPGLAQEH--LGIIRHGSKLLY 81 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~-~lPlv~l~Dt~-----G~~~g~~~E~--~g~~~~~a~~~~ 81 (203)
...+|.-.-|.-|+|...-+++.+..+.+.++++.+++. .+=+|.|.-.+ |.++....+. ....+.+.+++.
T Consensus 4 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK06072 4 VESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIR 83 (248)
T ss_pred EEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHH
Confidence 444554333444444445689999999999999876543 44555554322 3333211110 111222345566
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHHHHHHHhcCchhhhhhHHH--Hhh
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKGAVAILYRKEKDKSNYEVE--YND 152 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~~~~i~~~~~~~~~e~~~~--~~~ 152 (203)
.+.....|+|+.|-|.|+||++.... .||++++.+++.++ +..+-+....+.+. -.. .+.+ +.-
T Consensus 84 ~l~~~~kPvIaav~G~a~GgG~~lal----~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~--~g~-~a~~lll~g 156 (248)
T PRK06072 84 EIRFSDKIYISAINGVTAGACIGIAL----STDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKL--TGQ-RFYEILVLG 156 (248)
T ss_pred HHHhCCCCEEEEECCeeehHHHHHHH----hCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHH--hhH-HHHHHHHhC
Confidence 67788999999999999998876654 69999999987654 32222222111110 011 1222 122
Q ss_pred hcCCHHHHHHcCCccee
Q psy5160 153 KFRSPVAAAKKGYIDDI 169 (203)
Q Consensus 153 ~~~~~~~~~~~G~iD~V 169 (203)
..-++.++.+.|+||.+
T Consensus 157 ~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 157 GEFTAEEAERWGLLKIS 173 (248)
T ss_pred CccCHHHHHHCCCcccc
Confidence 22467889999999954
No 116
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.01 E-value=6.5e-05 Score=60.20 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDAF--NIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~~--~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
..|.++...+..+...+..+... .-||+..+||||..+. + + -.++..+.....|+.+++.|.|++++.
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~---~--~-----~~i~~~l~~~~~~v~t~~~g~aaS~~~ 83 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVT---A--G-----LAIYDTMQYIKPPVSTICLGLAASMGA 83 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHH---H--H-----HHHHHHHHhcCCCEEEEEEeEehhHHH
Confidence 45788888888877777666543 3799999999999642 2 1 133334455679999999999998877
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHH
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSK 130 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~ 130 (203)
+.++ .+| .++|.|++.+.+-.|.
T Consensus 84 ~i~~----~g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 84 LLLA----AGTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred HHHH----cCCCCCEEEccchHHHHcCCC
Confidence 7665 477 7999999888776664
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.00 E-value=0.0004 Score=67.13 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=92.7
Q ss_pred EEEEE-eCCC-CCcccCHHHHHHHHHHHHHHHh-CCCcEEEEe-c-----CCCCCCcHHH------HHhHHHHHHHHHHH
Q psy5160 17 IQILK-LNPK-APGCIDINAAVKSARFIRFCDA-FNIPIVTFI-D-----VPGFLPGLAQ------EHLGIIRHGSKLLY 81 (203)
Q Consensus 17 V~vva-~d~~-~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~-D-----t~G~~~g~~~------E~~g~~~~~a~~~~ 81 (203)
|+++- |++. ..-+++....+.+.++++.++. ..+=.|.|. . +.|.++.... +.........+++.
T Consensus 11 Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (699)
T TIGR02440 11 IAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFA 90 (699)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHH
Confidence 44443 4442 3468999999999999976654 444444442 2 2345554311 11112233445667
Q ss_pred HHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCC--Ceee-------eeCHHHHHHHHhcCchhhhhhHHHH--
Q psy5160 82 AYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT--AEIA-------VMGSKGAVAILYRKEKDKSNYEVEY-- 150 (203)
Q Consensus 82 a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~--a~i~-------v~gp~~~~~i~~~~~~~~~e~~~~~-- 150 (203)
.+....+|+|+.|-|.|+||++.... .||+++|.++ +.++ +..+-+....+.+. -....+.++
T Consensus 91 ~l~~~~kPvIAaVnG~a~GgG~~LaL----acD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~--vG~~~A~~lll 164 (699)
T TIGR02440 91 ELEALPIPVVAAIHGACLGGGLELAL----ACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRL--IGVSTALDMIL 164 (699)
T ss_pred HHHhCCCCEEEEECCEeecHHHHHHH----hCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHh--cCHHHHHHHHH
Confidence 77889999999999999998777764 6999999875 3333 32222222211110 011112221
Q ss_pred hhhcCCHHHHHHcCCcceecCCcchHHHHH
Q psy5160 151 NDKFRSPVAAAKKGYIDDIIEPRTTRMRIA 180 (203)
Q Consensus 151 ~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~ 180 (203)
.-+.-++..+.+.|+||+|++++++.+...
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~~~l~~~a~ 194 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQSILLDTAV 194 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecChhHHHHHHH
Confidence 122346788999999999999876554433
No 118
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.00 E-value=0.00014 Score=59.74 Aligned_cols=134 Identities=20% Similarity=0.210 Sum_probs=88.9
Q ss_pred CCcccCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDA--FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
++|.++...+..+..-+...+. ..-||.+.+||||..+- + | -.++.++...+.|+.+++.|-+.+.|.
T Consensus 30 l~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~---~--g-----~aIyd~m~~~~~~V~t~~~G~AaS~As 99 (196)
T PRK12551 30 LGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVY---D--G-----LGIFDTMQHVKPDVHTVCVGLAASMGA 99 (196)
T ss_pred ECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchh---h--H-----HHHHHHHHhcCCCEEEEEEEEehhHHH
Confidence 6888999999888877765543 25899999999998642 1 2 245556677788999999999888666
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHHHHH------------HHHhcCc-----------hhhhhhHHHHh-hhcCCH
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSKGAV------------AILYRKE-----------KDKSNYEVEYN-DKFRSP 157 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~~------------~i~~~~~-----------~~~~e~~~~~~-~~~~~~ 157 (203)
..++ .+| .++|.|++++.+-.|.+.. ++..-.+ ...++..+... +...++
T Consensus 100 lIl~----aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa 175 (196)
T PRK12551 100 FLLC----AGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSP 175 (196)
T ss_pred HHHh----CCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCH
Confidence 6654 234 4788999988877774321 0100000 00122222222 234688
Q ss_pred HHHHHcCCcceecCCc
Q psy5160 158 VAAAKKGYIDDIIEPR 173 (203)
Q Consensus 158 ~~~~~~G~iD~Vi~p~ 173 (203)
.++.+.|+||.|++..
T Consensus 176 ~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 176 SEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHcCCCcEEeccC
Confidence 9999999999999864
No 119
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.00 E-value=0.00016 Score=60.35 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhh
Q psy5160 30 IDINAAVKSARFIRFCDAF-NIP-IVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMS 107 (203)
Q Consensus 30 ~~~~~~~K~~r~i~~a~~~-~lP-lv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~ 107 (203)
.+....+.+.+.++.|.+. ++- ||.-+|++|+.+...+| +.+.+..+.+...|+++.+-+ +.+|+++..+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~e-------l~~~i~~~~~~~kpVia~~~~-~~sggy~las 97 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEE-------LRQALERFRASGKPVIAYADG-YSQGQYYLAS 97 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHH-------HHHHHHHHHHhCCeEEEEeCC-CCchhhhhhh
Confidence 3455677788888766543 444 55666999995433333 345555566678999998886 7777777765
Q ss_pred ccCCCcceEEecCCCeeeeeCHH
Q psy5160 108 EKNLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 108 ~~~~~~d~~~a~~~a~i~v~gp~ 130 (203)
.||.++|.|++.++..|.-
T Consensus 98 ----aad~I~a~p~~~vg~iGv~ 116 (222)
T cd07018 98 ----AADEIYLNPSGSVELTGLS 116 (222)
T ss_pred ----hCCEEEECCCceEEeeccc
Confidence 6999999999999987753
No 120
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.97 E-value=0.00076 Score=65.30 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=99.0
Q ss_pred ccceeee-CCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHh-CCCcEEEEec------CCCCCCcHHH-----H-Hh
Q psy5160 6 SGLQSSE-KFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDA-FNIPIVTFID------VPGFLPGLAQ-----E-HL 70 (203)
Q Consensus 6 ~~~~~~i-~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~-~~lPlv~l~D------t~G~~~g~~~-----E-~~ 70 (203)
+-++++. +|.-.-|.-|++. .--+++.+..+.+.++++.++. ..+-.|.|.- +.|+++..-. + ..
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 3356666 4444444455552 4457999999999999976654 4555555542 2234443210 0 01
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCC--eee-------eeCHHHHHHHHhcCch
Q psy5160 71 GIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTA--EIA-------VMGSKGAVAILYRKEK 141 (203)
Q Consensus 71 g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a--~i~-------v~gp~~~~~i~~~~~~ 141 (203)
...+...+++..+.+..+|+|+.|-|.|+||++.... .||++++.+++ .++ +..+-+....+.+.
T Consensus 85 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~Lal----acD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~-- 158 (708)
T PRK11154 85 ALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELAL----ACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRL-- 158 (708)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHH----hCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhh--
Confidence 1122334466677789999999999999998777654 69999998864 443 32222221111110
Q ss_pred hhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHH
Q psy5160 142 DKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQ 181 (203)
Q Consensus 142 ~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~ 181 (203)
-....+.++ .-+.-++.++.+.|+||+|++++++.+...+
T Consensus 159 vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~ 200 (708)
T PRK11154 159 IGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVE 200 (708)
T ss_pred cCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHH
Confidence 011112221 1222467889999999999998765444333
No 121
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.97 E-value=0.00069 Score=65.91 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=94.7
Q ss_pred cceeeeCCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhC-CCc-EEEEecC-----CCCCCcHHH------HHhHH
Q psy5160 7 GLQSSEKFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAF-NIP-IVTFIDV-----PGFLPGLAQ------EHLGI 72 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~-~lP-lv~l~Dt-----~G~~~g~~~------E~~g~ 72 (203)
.++++++|.-.-|.-|++. .--+++.+..+.+..+++.+++. .+- +|.+.-. .|.++.... +....
T Consensus 14 ~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 93 (737)
T TIGR02441 14 HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQL 93 (737)
T ss_pred eEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHH
Confidence 3566676654444444453 34689999999999999877654 343 3333332 244443211 11122
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCC--eeee-------eCHHHHHHHHhcCchhh
Q psy5160 73 IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTA--EIAV-------MGSKGAVAILYRKEKDK 143 (203)
Q Consensus 73 ~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a--~i~v-------~gp~~~~~i~~~~~~~~ 143 (203)
.+...+++..+....+|+|+.|-|.|+||++.... .||+++|.+++ .+++ ...-+....+.+. -.
T Consensus 94 ~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLAL----acD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprl--iG 167 (737)
T TIGR02441 94 SQEGQEMFERIEKSQKPIVAAISGSCLGGGLELAL----ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKL--TG 167 (737)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHH----hCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHh--hC
Confidence 23445667777889999999999999998877664 69999999874 4432 2111111111110 01
Q ss_pred hhhHHHHh--hhcCCHHHHHHcCCcceecCC
Q psy5160 144 SNYEVEYN--DKFRSPVAAAKKGYIDDIIEP 172 (203)
Q Consensus 144 ~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p 172 (203)
...+.++. -..-++..+.+.|+||+|+++
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 11122221 122367789999999999997
No 122
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.96 E-value=0.0011 Score=62.48 Aligned_cols=179 Identities=10% Similarity=0.060 Sum_probs=103.6
Q ss_pred cceeeeCCeEEEEEEeCC-------C---CCcccCHHHHHHHHHHHHHHH--hCCCcEEEEec------CCCCCCcHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNP-------K---APGCIDINAAVKSARFIRFCD--AFNIPIVTFID------VPGFLPGLAQE 68 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~-------~---~gG~~~~~~~~K~~r~i~~a~--~~~lPlv~l~D------t~G~~~g~~~E 68 (203)
.++++++|.-.-|.-|++ . ..-+++......+.++++.+. ...+-+|.|.- +.|++++...+
T Consensus 16 ~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~ 95 (550)
T PRK08184 16 HWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGG 95 (550)
T ss_pred eEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhc
Confidence 367778775444444432 1 234799999999999998765 35666676653 23344332110
Q ss_pred ----H-hHHHH----HHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCC--Ceeeee-----C--HH
Q psy5160 69 ----H-LGIIR----HGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPT--AEIAVM-----G--SK 130 (203)
Q Consensus 69 ----~-~g~~~----~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~--a~i~v~-----g--p~ 130 (203)
. ..... ....+...+....+|+|+.|-|.|+||++.... .||++++.++ +.++.- | |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LAL----acD~rIas~~~~a~fg~pEv~~~Gl~P~ 171 (550)
T PRK08184 96 SSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELAL----ACDEIVLVDDRSSAVSLPEVPLLGVLPG 171 (550)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHH----hCCEEEEecCCCcEEEccchhccccCCC
Confidence 0 00000 111133345578999999999999999888775 6999999886 555431 1 21
Q ss_pred H--HHHHHhcCchhhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHhhcCC
Q psy5160 131 G--AVAILYRKEKDKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKK 190 (203)
Q Consensus 131 ~--~~~i~~~~~~~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~~~~ 190 (203)
. ...+.. ...-...++.++ ..+.-++.++.+.|+||+|++++++.....+....+..++
T Consensus 172 ~gg~~rl~~-~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 172 TGGLTRVTD-KRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred cchHHHhhh-hhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 1 111110 001112222222 2223467789999999999998877766655555554443
No 123
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.95 E-value=0.00025 Score=58.00 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCcccCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCD--AFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~--~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.+|.++...+..+..-+...+ ...-||.+.+||||..+. . +-.++..+...+.|+.+++.|.|.+.|.
T Consensus 31 l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~---~-------g~~I~d~l~~~~~~v~t~~~G~AaSaas 100 (191)
T TIGR00493 31 LSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSIT---A-------GLAIYDTMQFIKPDVSTICIGQAASMGA 100 (191)
T ss_pred EccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHH---H-------HHHHHHHHHhcCCCEEEEEEEeeccHHH
Confidence 578899888877765554443 345799999999998642 1 2234445556667888999999887655
Q ss_pred hhh-hccCCCcceEEecCCCeeeeeCHH
Q psy5160 104 AVM-SEKNLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 104 ~~~-~~~~~~~d~~~a~~~a~i~v~gp~ 130 (203)
..+ ++ ..+.++|.|++.+.+-.|.
T Consensus 101 lI~~aG---~~~~r~~~p~s~imiH~p~ 125 (191)
T TIGR00493 101 FLLSAG---AKGKRFSLPNSRIMIHQPL 125 (191)
T ss_pred HHHhcC---CCCcEEecCCceEEEecCc
Confidence 444 31 2346899999999988775
No 124
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.93 E-value=0.00013 Score=69.09 Aligned_cols=100 Identities=20% Similarity=0.141 Sum_probs=65.9
Q ss_pred eEEEEEEeCCC-C--CcccCHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 15 NLIQILKLNPK-A--PGCIDINAAVKSARFIRFCDAF-N-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 15 r~V~vva~d~~-~--gG~~~~~~~~K~~r~i~~a~~~-~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
..|+++--+.. . .+..+..+.+.+.+.++.+.+. + -.||.-+||||...-..+ .+.+.+..+.....|
T Consensus 308 ~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase-------~i~~~i~~~~~~gKP 380 (584)
T TIGR00705 308 DKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASE-------IIRRELARAQARGKP 380 (584)
T ss_pred CeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHH-------HHHHHHHHHHhCCCc
Confidence 44555554432 1 1222333456677777766443 3 589999999998653221 123344445566799
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA 125 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~ 125 (203)
+|+.+-|-|.+|+++..+ .||.++|.|++.++
T Consensus 381 Vva~~~g~aaSggY~iA~----aaD~I~a~p~t~~G 412 (584)
T TIGR00705 381 VIVSMGAMAASGGYWIAS----AADYIVASPNTITG 412 (584)
T ss_pred EEEEECCccccHHHHHHH----hCCEEEECCCCeee
Confidence 999999999999999887 69999999997653
No 125
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.91 E-value=0.0013 Score=59.65 Aligned_cols=172 Identities=13% Similarity=0.042 Sum_probs=100.1
Q ss_pred cceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHH-HhCCCcEEEEecC-----CCCCCcHHHHH--hH-------
Q psy5160 7 GLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFC-DAFNIPIVTFIDV-----PGFLPGLAQEH--LG------- 71 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a-~~~~lPlv~l~Dt-----~G~~~g~~~E~--~g------- 71 (203)
.+.+.++|.-.-|.-|.|..--+++.+....+.++++.+ ....+-+|.|.=. .|.++....+. .+
T Consensus 38 ~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 38 QVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 355566775444455556534589999999999998755 4456666655432 23333221110 00
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeee------CHHH-HHHHHhcCchhhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVM------GSKG-AVAILYRKEKDKS 144 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~------gp~~-~~~i~~~~~~~~~ 144 (203)
..+..-++++.+....+|+|+.|-|.|.||+.-... .+|++++.+++.+++- -|.+ ....+.+.. .
T Consensus 118 ~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal----~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~---G 190 (401)
T PLN02157 118 FFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSI----PGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLP---G 190 (401)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHH----hCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhh---h
Confidence 111112344556788999999999999998777765 6999999988765531 1222 222221110 1
Q ss_pred hhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 145 NYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 145 e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
....++ .-..-++.++.+.|++|.++++.++. .+.+.+..+
T Consensus 191 ~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l~-~~~~~~~~i 233 (401)
T PLN02157 191 RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEIP-VMEEQLKKL 233 (401)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHHH-HHHHHHHHH
Confidence 112221 11123567899999999999987663 333444433
No 126
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.90 E-value=0.00033 Score=57.85 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=88.3
Q ss_pred CCcccCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIRFCDA--FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.+|.++.+.+..+..-+-..+. ..-||-+.+||||..+- .| -.++.++.....|+.+++.|-|++.|.
T Consensus 32 l~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~-----~G-----laIyd~m~~~~~~V~Ti~~G~AaS~As 101 (201)
T PRK14513 32 VGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVY-----AG-----LAIYDTMRYIKAPVSTICVGIAMSMGS 101 (201)
T ss_pred ECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchh-----hH-----HHHHHHHHhcCCCEEEEEEeeehhhHH
Confidence 6889999998888655544443 35799999999998642 22 345556677788999999999988766
Q ss_pred hhhhccCCCcc--eEEecCCCeeeeeCHHHH-----HHH-------HhcC-----------chhhhhhHHHHh-hhcCCH
Q psy5160 104 AVMSEKNLRSD--VNYAWPTAEIAVMGSKGA-----VAI-------LYRK-----------EKDKSNYEVEYN-DKFRSP 157 (203)
Q Consensus 104 ~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~-----~~i-------~~~~-----------~~~~~e~~~~~~-~~~~~~ 157 (203)
..+. .+| .++|.|++.+.+=.|.+. ..+ ..-+ ....++..+.+. +.+.+|
T Consensus 102 ~il~----aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa 177 (201)
T PRK14513 102 VLLM----AGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSP 177 (201)
T ss_pred HHHh----cCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCH
Confidence 6644 344 478888888877666421 111 1000 000122222222 234688
Q ss_pred HHHHHcCCcceecCCcc
Q psy5160 158 VAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 158 ~~~~~~G~iD~Vi~p~~ 174 (203)
.++.+.|+||.|+++..
T Consensus 178 ~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 178 EEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHHcCCCcEEeccCC
Confidence 99999999999999743
No 127
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.88 E-value=0.00012 Score=58.87 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=63.7
Q ss_pred CCcccCHHHHHHHHHHHH-HH-HhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKSARFIR-FC-DAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~-~a-~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
..|.++...+..+..-+. +- ...+-||...+||||..+. .+-.++..+.....|+.+++.|.|.+.+.
T Consensus 21 l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~----------~g~~i~~~i~~~~~~v~t~~~G~aaSaa~ 90 (182)
T PF00574_consen 21 LNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVD----------AGLAIYDAIRSSKAPVTTVVLGLAASAAT 90 (182)
T ss_dssp EESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHH----------HHHHHHHHHHHSSSEEEEEEEEEEETHHH
T ss_pred ECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccH----------HHHHHHHHHHhcCCCeEEEEeCcccccee
Confidence 458899999888776554 42 3466899999999997632 12356666778899999999999987766
Q ss_pred hhhhccCCCcce--EEecCCCeeeeeCH
Q psy5160 104 AVMSEKNLRSDV--NYAWPTAEIAVMGS 129 (203)
Q Consensus 104 ~~~~~~~~~~d~--~~a~~~a~i~v~gp 129 (203)
..+. .++. ++|.|++.+.+-.|
T Consensus 91 ~i~~----ag~~~~R~~~~~s~~m~H~p 114 (182)
T PF00574_consen 91 LIFL----AGDKGKRYASPNSRFMIHQP 114 (182)
T ss_dssp HHHH----TSSTTTEEE-TT-EEEES-C
T ss_pred hhhh----cCCcCceeeeecCEEEeecc
Confidence 6554 4555 68888887765544
No 128
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.87 E-value=0.00016 Score=59.45 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=67.1
Q ss_pred cccC---HHHHHHHHHHHHHHHh-CC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhh
Q psy5160 28 GCID---INAAVKSARFIRFCDA-FN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGA 102 (203)
Q Consensus 28 G~~~---~~~~~K~~r~i~~a~~-~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga 102 (203)
|.|+ ....+.+.+.++.+.+ .+ .-||+-.|++|..+... ..+.+.+..+.....|+++.+-|.|.|++
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~g~~~s~g 81 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMGDVAASGG 81 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence 5565 6678888888876643 33 44566689999876422 22345666667779999999999999988
Q ss_pred hhhhhccCCCcceEEecCCCeeeeeCH
Q psy5160 103 YAVMSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 103 ~~~~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
++..+ .+|.++|.|++.++..|.
T Consensus 82 ~~lA~----aaD~i~a~~~s~~g~iG~ 104 (208)
T cd07023 82 YYIAA----AADKIVANPTTITGSIGV 104 (208)
T ss_pred HHHHh----hCCEEEECCCCeEEeCcE
Confidence 88876 699999999998875554
No 129
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.86 E-value=0.0023 Score=62.10 Aligned_cols=170 Identities=18% Similarity=0.142 Sum_probs=100.5
Q ss_pred cceeeeCCeEEEEEEeC-CCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecC-----CCCCCcHHH--------HHhH
Q psy5160 7 GLQSSEKFNLIQILKLN-PKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDV-----PGFLPGLAQ--------EHLG 71 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d-~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt-----~G~~~g~~~--------E~~g 71 (203)
.+++......|+++--| +..--+++.+..+.+.++++.+. ...+=.|.|.-. .|+++.... +...
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 34555322235554444 43446799999999999997664 445555555432 234432211 1011
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC------HH-HH-HHHHhcCchhh
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG------SK-GA-VAILYRKEKDK 143 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g------p~-~~-~~i~~~~~~~~ 143 (203)
..+...+++..+....+|+|+.|-|.|.||++-... .||++++.+++.+++-. |. +. ..+... -.
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLal----acD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rl---iG 159 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVL----ATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRV---IG 159 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHH----hCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHH---hC
Confidence 222344566677789999999999999998777764 69999999988776411 11 11 111100 01
Q ss_pred hhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHHHHHH
Q psy5160 144 SNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDL 183 (203)
Q Consensus 144 ~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L 183 (203)
...+.++. -...++..+.+.|+||.|++++++.....+..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a 201 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLL 201 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHH
Confidence 11122221 12246788999999999999877655544444
No 130
>KOG0368|consensus
Probab=97.85 E-value=9.3e-05 Score=74.84 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=129.4
Q ss_pred cccccceeee--CCeEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHH-----
Q psy5160 3 AYKSGLQSSE--KFNLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIR----- 74 (203)
Q Consensus 3 ~~~~~~~~~i--~Gr~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~----- 74 (203)
|++--++.-- .||.+-||+||-| .-|++|+..-+-+.++-++|.+.+||-|+|.-.+|+|+|...|-....+
T Consensus 1532 Aw~~~~~TpEyP~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lfkVaw~d 1611 (2196)
T KOG0368|consen 1532 AWKLTVKTPEYPEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLFKVAWVD 1611 (2196)
T ss_pred EEEEEecCCCCCCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHheeeccC
Confidence 4444444434 8999999999999 9999999999999999999999999999999999999996655332221
Q ss_pred -------------------HHHHHH-------------------------------------H---HHHhCCCCEEEEEc
Q psy5160 75 -------------------HGSKLL-------------------------------------Y---AYAESTVPKITVIT 95 (203)
Q Consensus 75 -------------------~~a~~~-------------------------------------~---a~~~~~vP~isvv~ 95 (203)
.+.... . ..+-..+|++++|+
T Consensus 1612 ~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetSrAY~ei~T~t~VT 1691 (2196)
T KOG0368|consen 1612 EDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETSRAYNEIFTITLVT 1691 (2196)
T ss_pred CCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccceeccccccccchhhhhhhccceEEEEe
Confidence 011000 0 01123589999999
Q ss_pred CCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhhhhhHHHHhhhcCCHHHHHHcCCcceecCC-cc
Q psy5160 96 RKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEP-RT 174 (203)
Q Consensus 96 g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~G~iD~Vi~p-~~ 174 (203)
|++.|-++|..- .+..++-.++..|=..|-.+.-+++-++--... -.++.++-+.++|..+..++. -+
T Consensus 1692 ~RsVGIGAYlvR----LgqR~IQve~~~iILTGa~ALNklLGreVYTSN-------~QLGG~qIM~~NGVsHlTv~dDle 1760 (2196)
T KOG0368|consen 1692 GRSVGIGAYLAR----LGQRIIQVEDQHIILTGASALNKLLGREVYTSN-------NQLGGPQIMHRNGVSHLTVSDDLE 1760 (2196)
T ss_pred cceeeHHHHHHH----HHHHHHHhcCCceEEeCHHHHHHHhcccccccc-------cccCCeEEeccCCceEEEecccHH
Confidence 999995555443 567788889999989998888777754321110 124567667889999888773 35
Q ss_pred hHHHHHHHHHHhhcCCC
Q psy5160 175 TRMRIAQDLKFLLNKKQ 191 (203)
Q Consensus 175 tR~~l~~~L~~l~~~~~ 191 (203)
--..|.+||+++|.+..
T Consensus 1761 GV~ki~~WlSY~Pa~~~ 1777 (2196)
T KOG0368|consen 1761 GVAKILNWLSYLPAKRN 1777 (2196)
T ss_pred HHHHHHHHHHhCCcccC
Confidence 66689999999987763
No 131
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.84 E-value=0.002 Score=58.58 Aligned_cols=171 Identities=11% Similarity=0.012 Sum_probs=100.3
Q ss_pred cccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHH-hCCCcEEEEecCC-----CCCCcHHHHH---------
Q psy5160 5 KSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCD-AFNIPIVTFIDVP-----GFLPGLAQEH--------- 69 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~-~~~lPlv~l~Dt~-----G~~~g~~~E~--------- 69 (203)
.+.+.....|.---|.-|++..--+++.+....+.++++.++ ...+-+|.|.=.+ |.++....+.
T Consensus 41 ~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 41 QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 345556666654334455555335899999999999997654 4566666664322 3333211110
Q ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeee-------eeCHHH-HHHHHhcCch
Q psy5160 70 LGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIA-------VMGSKG-AVAILYRKEK 141 (203)
Q Consensus 70 ~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~-------v~gp~~-~~~i~~~~~~ 141 (203)
....+..-++.+.+.....|+|+++-|.|+||+..... .+|++++.+++.++ +. |.+ +.-.+.+..
T Consensus 121 ~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal----~~D~rVate~a~famPE~~iGl~-PdvG~s~~L~rl~- 194 (407)
T PLN02851 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISI----PGMFRVVTDKTVFAHPEVQMGFH-PDAGASYYLSRLP- 194 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHH----hCCEEEEeCCceEecchhccCCC-CCccHHHHHHHhc-
Confidence 01112222344455678999999999999999877765 69999988876544 33 222 222222211
Q ss_pred hhhhhHHH--HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 142 DKSNYEVE--YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 142 ~~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.....+ +.-..-++.++.+.|++|.+++.++. +.+.+.|.
T Consensus 195 --g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~ 236 (407)
T PLN02851 195 --GYLGEYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLG 236 (407)
T ss_pred --CHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHH
Confidence 111111 11122356789999999999998766 44444443
No 132
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.79 E-value=0.0022 Score=57.81 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=97.1
Q ss_pred cccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHH-HhCCCcEEEEecCC-----CCCCcHHHHH--hHH----
Q psy5160 5 KSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFC-DAFNIPIVTFIDVP-----GFLPGLAQEH--LGI---- 72 (203)
Q Consensus 5 ~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a-~~~~lPlv~l~Dt~-----G~~~g~~~E~--~g~---- 72 (203)
...+.+..+|.-.-|.-|++..--+++.+....+.++++-+ ....+-+|.|.-.+ |.++....+. .+.
T Consensus 8 ~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 34566666665444555655533589999999999999755 44566666665433 3333221110 110
Q ss_pred ---HHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee-------eCHHHHHHHHhcCchh
Q psy5160 73 ---IRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV-------MGSKGAVAILYRKEKD 142 (203)
Q Consensus 73 ---~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v-------~gp~~~~~i~~~~~~~ 142 (203)
.+..-.+.+.+.....|+|++|-|.|+||+..... .+|++++.+++.+++ ...-+....+.+..
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal----~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~-- 161 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSV----HGRFRIATENTVFAMPETALGLFPDVGASYFLSRLP-- 161 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhh----cCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHH--
Confidence 11111233345678999999999999999877765 699999998876553 21112222221110
Q ss_pred hhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHH
Q psy5160 143 KSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRM 177 (203)
Q Consensus 143 ~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~ 177 (203)
.....++ .-..-++.++.+.|++|.++++.++-.
T Consensus 162 -G~~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (381)
T PLN02988 162 -GFFGEYVGLTGARLDGAEMLACGLATHFVPSTRLTA 197 (381)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHH
Confidence 1111111 111235678999999999999765443
No 133
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00025 Score=64.33 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=79.1
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEE
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI 91 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~i 91 (203)
.+..|.++--| |.+++..+.-+.|.++.|.+.+ -.+|...||||... ..+.++++++.++.+|++
T Consensus 24 ~~~~v~vi~i~----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~----------~sm~~iv~~i~~s~vPV~ 89 (436)
T COG1030 24 AEKKVYVIEID----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLL----------DSMRQIVRAILNSPVPVI 89 (436)
T ss_pred cCCeEEEEEec----CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchH----------HHHHHHHHHHHcCCCCEE
Confidence 34566677667 8899999999999999999888 99999999999853 223577788899999977
Q ss_pred EEEcCC---C-chhhhhhhhccCCCcceEEecCCCeeeeeCH
Q psy5160 92 TVITRK---A-YGGAYAVMSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 92 svv~g~---~-~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
..|.=+ | ..|++.+| .+|..+|-|++.+|..-|
T Consensus 90 ~yv~p~ga~AaSAGtyI~m-----~~hiaaMAPgT~iGaa~P 126 (436)
T COG1030 90 GYVVPDGARAASAGTYILM-----ATHIAAMAPGTNIGAATP 126 (436)
T ss_pred EEEcCCCcchhchhhHHHH-----hcChhhhCCCCcccccce
Confidence 777722 3 45788887 599999999999886655
No 134
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.72 E-value=0.0022 Score=60.42 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=100.2
Q ss_pred eeCCeEEEEEEeCCC--CC-----------cccCHHHHHHHHHHHHHHH--hCCCcEEEEecCC------CCCCcHHH--
Q psy5160 11 SEKFNLIQILKLNPK--AP-----------GCIDINAAVKSARFIRFCD--AFNIPIVTFIDVP------GFLPGLAQ-- 67 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~--~g-----------G~~~~~~~~K~~r~i~~a~--~~~lPlv~l~Dt~------G~~~g~~~-- 67 (203)
.++|.-.-|.-|+|. +. -+++.+..+.+..+++.+. ...+-+|.|.=.+ |.++....
T Consensus 267 ~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~ 346 (550)
T PRK08184 267 DRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHK 346 (550)
T ss_pred EccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhccc
Confidence 345665555566665 32 5899999999999998665 3566666665432 22321100
Q ss_pred H---HhHHHHHHHHHHHHHHhCCCCEEEEEc-CCCchhh-hhhhhccCCCcceEEec-------CCCeee-------eeC
Q psy5160 68 E---HLGIIRHGSKLLYAYAESTVPKITVIT-RKAYGGA-YAVMSEKNLRSDVNYAW-------PTAEIA-------VMG 128 (203)
Q Consensus 68 E---~~g~~~~~a~~~~a~~~~~vP~isvv~-g~~~Gga-~~~~~~~~~~~d~~~a~-------~~a~i~-------v~g 128 (203)
+ .....+...+++..+....+|+|+.|- |.|+||+ +-... .||++||. ++++++ +..
T Consensus 347 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLal----acD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p 422 (550)
T PRK08184 347 DHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELAL----AADRSYMLALPDDNDPAPAITLSALNFGLYP 422 (550)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHH----HCChhhhcCCCCCCCCCCEEECccccccCCC
Confidence 0 011222333456677788999999996 9999887 55543 69999998 776654 332
Q ss_pred HHHHH-HHHhcCchhhhhhHHH----HhhhcCCHHHHHHcCCcceecCCcchHHHHHHHHHHh
Q psy5160 129 SKGAV-AILYRKEKDKSNYEVE----YNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFL 186 (203)
Q Consensus 129 p~~~~-~i~~~~~~~~~e~~~~----~~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l 186 (203)
.-+.. .+..+- -...++.+ +.-+.-++..+.+.|+||+|+++.++.+...+..+.+
T Consensus 423 ~~gg~~~L~r~~--vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~i 483 (550)
T PRK08184 423 MVNGLSRLARRF--YGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEER 483 (550)
T ss_pred CCCcHHHhHHHh--cChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHH
Confidence 21111 121110 01111122 2222346788999999999999877655544444444
No 135
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.66 E-value=0.0062 Score=57.40 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=92.3
Q ss_pred cccCHHHHHHHHHHHHHHHh--CCCcEEEEecCC------CCCCcHHH--H---HhHHHHHHHHHHHHHHhCCCCEEEEE
Q psy5160 28 GCIDINAAVKSARFIRFCDA--FNIPIVTFIDVP------GFLPGLAQ--E---HLGIIRHGSKLLYAYAESTVPKITVI 94 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~--~~lPlv~l~Dt~------G~~~g~~~--E---~~g~~~~~a~~~~a~~~~~vP~isvv 94 (203)
-+++.+..+.+...++.+.+ ..+=+|.|.=.+ |.++.... + .........+++..+....+|+|+.|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 78999999999999976652 566666664322 23332111 0 01112223346777888999999999
Q ss_pred -cCCCchhh-hhhhhccCCCcceEEe-------cCCCeeee-------eCHHHHH-HHHhc--CchhhhhhHHHHhhhcC
Q psy5160 95 -TRKAYGGA-YAVMSEKNLRSDVNYA-------WPTAEIAV-------MGSKGAV-AILYR--KEKDKSNYEVEYNDKFR 155 (203)
Q Consensus 95 -~g~~~Gga-~~~~~~~~~~~d~~~a-------~~~a~i~v-------~gp~~~~-~i~~~--~~~~~~e~~~~~~~~~~ 155 (203)
-|.|+||+ +-... .||++|| .+++.++. ...-+.. .+..+ ......+..-.+.-+.-
T Consensus 373 ~~G~a~GgG~~eLal----acD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i 448 (546)
T TIGR03222 373 EPGSCFAGTLAELAF----AADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQAL 448 (546)
T ss_pred CCCeEeHHHHHHHHH----hCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCC
Confidence 89999998 55543 6999999 78877653 2111111 11111 00001000011222234
Q ss_pred CHHHHHHcCCcceecCCcchHHHHHHHHHHhh
Q psy5160 156 SPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187 (203)
Q Consensus 156 ~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~~l~ 187 (203)
++.++.+.|+|+.|+++.++.+...+..+.+.
T Consensus 449 ~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 480 (546)
T TIGR03222 449 DAEEAERLGLVTAAPDDIDWEDEIRIALEERA 480 (546)
T ss_pred CHHHHHHcCCcccccCchHHHHHHHHHHHHHH
Confidence 67889999999999998776555555544443
No 136
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.60 E-value=0.00057 Score=57.25 Aligned_cols=142 Identities=16% Similarity=0.140 Sum_probs=85.3
Q ss_pred CCcccCHH----------HHHHHHH-HHHHHHh-CCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEE
Q psy5160 26 APGCIDIN----------AAVKSAR-FIRFCDA-FNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITV 93 (203)
Q Consensus 26 ~gG~~~~~----------~~~K~~r-~i~~a~~-~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isv 93 (203)
+||.++.+ .+..+.. ++-+-.+ ..-||-+.+||||..+-.. +..|....+--++.++...+-|+.++
T Consensus 35 l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G-~~iG~v~~glaIyD~m~~ik~~V~Tv 113 (222)
T PRK12552 35 LGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTG-DAIGFETEAFAICDTMRYIKPPVHTI 113 (222)
T ss_pred ECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccc-ccccccccHHHHHHHHHhcCCCeEEE
Confidence 46666665 6655543 3334333 4689999999999864211 11122222334556666777889999
Q ss_pred EcCCCchhhhhhhhccCCCcc--eEEecCCCeeeeeCHHHHH-----HHHh-cCch-----------------hhhhhHH
Q psy5160 94 ITRKAYGGAYAVMSEKNLRSD--VNYAWPTAEIAVMGSKGAV-----AILY-RKEK-----------------DKSNYEV 148 (203)
Q Consensus 94 v~g~~~Gga~~~~~~~~~~~d--~~~a~~~a~i~v~gp~~~~-----~i~~-~~~~-----------------~~~e~~~ 148 (203)
++|-+++.|...++ .++ .++|.|++++.+=.|.+.. .+.. .++. ..++..+
T Consensus 114 ~~G~AaS~AslIl~----aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~ 189 (222)
T PRK12552 114 CIGQAMGTAAMILS----AGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK 189 (222)
T ss_pred EEeehhhHHHHHHh----CCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999987666665 244 4788888888776664321 1110 0000 0122222
Q ss_pred HHh-hhcCCHHHHHHcCCcceecCC
Q psy5160 149 EYN-DKFRSPVAAAKKGYIDDIIEP 172 (203)
Q Consensus 149 ~~~-~~~~~~~~~~~~G~iD~Vi~p 172 (203)
.+. +.+.++.++.+.|+||.|+++
T Consensus 190 d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 190 DTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HhcCCCcCCHHHHHHcCCCcEEecc
Confidence 222 234688999999999999986
No 137
>KOG0840|consensus
Probab=97.59 E-value=0.00029 Score=59.74 Aligned_cols=141 Identities=23% Similarity=0.258 Sum_probs=93.6
Q ss_pred CCcccCHHHHHHH-HHHHHHH-HhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhh
Q psy5160 26 APGCIDINAAVKS-ARFIRFC-DAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 26 ~gG~~~~~~~~K~-~r~i~~a-~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~ 103 (203)
.|+.++.+-+.-+ ++++-|- +...-||...+|+||..+- + | --++.++...+-|+-|+.+|-+++-++
T Consensus 97 lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vt---a--g-----lAIYDtMq~ik~~V~Tic~G~Aas~aa 166 (275)
T KOG0840|consen 97 LGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVT---A--G-----LAIYDTMQYIKPDVSTICVGLAASMAA 166 (275)
T ss_pred eCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccc---h--h-----hhHHHHHHhhCCCceeeehhhHHhHHH
Confidence 5888998887554 4555443 5678999999999999761 2 2 234556777788899999999998655
Q ss_pred hhhhccCCCcceEEecCCCeeeeeCHHHHHH-----HH-hcCchh-----------------hhhhHHHHh-hhcCCHHH
Q psy5160 104 AVMSEKNLRSDVNYAWPTAEIAVMGSKGAVA-----IL-YRKEKD-----------------KSNYEVEYN-DKFRSPVA 159 (203)
Q Consensus 104 ~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~-----i~-~~~~~~-----------------~~e~~~~~~-~~~~~~~~ 159 (203)
..+++ -.--..++.|++++.+=-|.+.+. +. +.++.. .++..+... +.+.+|.+
T Consensus 167 lLLaa--G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~E 244 (275)
T KOG0840|consen 167 LLLAA--GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEE 244 (275)
T ss_pred HHHhc--CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHH
Confidence 55542 023478999999998877765422 11 000000 122222222 23468999
Q ss_pred HHHcCCcceecC-CcchHHH
Q psy5160 160 AAKKGYIDDIIE-PRTTRMR 178 (203)
Q Consensus 160 ~~~~G~iD~Vi~-p~~tR~~ 178 (203)
+.+.|.||.|++ |.++|..
T Consensus 245 A~eyGliD~v~~~p~~~~~~ 264 (275)
T KOG0840|consen 245 AKEYGLIDKVIDHPPETRVD 264 (275)
T ss_pred HHHhcchhhhhcCCcccccc
Confidence 999999999999 7666654
No 138
>KOG1680|consensus
Probab=97.53 E-value=0.0018 Score=55.60 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=100.1
Q ss_pred eeeeCCeEEEEEEeCC-CCCcccCHHHHHHHHHHHHHH-HhCCCcEEEEecCCC-----CCCcHHHH--H-hHHHHHHHH
Q psy5160 9 QSSEKFNLIQILKLNP-KAPGCIDINAAVKSARFIRFC-DAFNIPIVTFIDVPG-----FLPGLAQE--H-LGIIRHGSK 78 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~-~~gG~~~~~~~~K~~r~i~~a-~~~~lPlv~l~Dt~G-----~~~g~~~E--~-~g~~~~~a~ 78 (203)
+++-....|++|.-|. ..=-++.........+.+... +....|+|.|-=+.+ +++..... . .......-+
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~ 118 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLR 118 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccc
Confidence 4455666778777663 333578888888888877544 456789998876653 33321110 0 001111223
Q ss_pred HHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHHHHhcCchhh-------hhhHHHHh
Q psy5160 79 LLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDK-------SNYEVEYN 151 (203)
Q Consensus 79 ~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~i~~~~~~~~-------~e~~~~~~ 151 (203)
.+..+++.+.|.|+.|-|-|.||+.-.. ++||++||.++|.+++-.++...--.+...... ..++--+.
T Consensus 119 ~~~~~~~~~KPvIaainG~AlgGG~ELa----lmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~lt 194 (290)
T KOG1680|consen 119 VWDLVSRLKKPVIAAINGFALGGGLELA----LMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILT 194 (290)
T ss_pred hhhhhhhcccceeEeeeceeeccchhhh----hhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHh
Confidence 3444556789999999999998877654 379999999999998877664322222222111 11111011
Q ss_pred hhcCCHHHHHHcCCcceecCCcc
Q psy5160 152 DKFRSPVAAAKKGYIDDIIEPRT 174 (203)
Q Consensus 152 ~~~~~~~~~~~~G~iD~Vi~p~~ 174 (203)
-..-++.++.+.|+|+.|++..+
T Consensus 195 g~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 195 GRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred cCcccHHHHHhCCceeEeecchh
Confidence 22346788999999999999766
No 139
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0017 Score=57.12 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=69.7
Q ss_pred EEEEEEeCCC--CCc----ccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 16 LIQILKLNPK--APG----CIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 16 ~V~vva~d~~--~gG----~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
.++++=.+.. .+| .++.+...+..+.+.. +..--+||..+||||..+... ..+++.++.+..-. |
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~-~~~vk~vvL~inSPGG~v~as-------~~i~~~l~~l~~~~-P 130 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARA-DPSVKAVVLRINSPGGSVVAS-------ELIARALKRLRAKK-P 130 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhc-CCCCceEEEEEECcCCchhHH-------HHHHHHHHHHhhcC-C
Confidence 4566555544 222 3455555555444332 345579999999999986422 22466666666666 9
Q ss_pred EEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCH
Q psy5160 90 KITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
+++.+-+-|..|++|..+ .+|.++|.|++.+|..|+
T Consensus 131 V~v~v~~~AASGGY~IA~----aAd~I~a~p~si~GSIGV 166 (317)
T COG0616 131 VVVSVGGYAASGGYYIAL----AADKIVADPSSITGSIGV 166 (317)
T ss_pred EEEEECCeecchhhhhhc----cCCEEEecCCceeeecee
Confidence 998888888888898887 699999999998886665
No 140
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0018 Score=53.38 Aligned_cols=136 Identities=22% Similarity=0.239 Sum_probs=85.1
Q ss_pred CCcccCHHHHHHHHHHHH-HH-HhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCch-hh
Q psy5160 26 APGCIDINAAVKSARFIR-FC-DAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYG-GA 102 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~-~a-~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~G-ga 102 (203)
.+|.++...+..+...+- +. +...-||...+||||..+. .| --++..+..-+-|+.++++|-+.. |+
T Consensus 32 l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~-----aG-----~AIydtm~~ik~~V~ti~~G~AaSmgs 101 (200)
T COG0740 32 LGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVT-----AG-----LAIYDTMQFIKPPVSTICMGQAASMGS 101 (200)
T ss_pred EeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccc-----hh-----HHHHHHHHhcCCCeEEEEecHHHhHHH
Confidence 456777775655555443 33 3347899999999998652 23 245556677788999999997655 56
Q ss_pred hhhhhccCCCcceEEecCCCeeeeeCHHHHHH-----HH-hcCchh-----------------hhhhHHHHh-hhcCCHH
Q psy5160 103 YAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVA-----IL-YRKEKD-----------------KSNYEVEYN-DKFRSPV 158 (203)
Q Consensus 103 ~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~-----i~-~~~~~~-----------------~~e~~~~~~-~~~~~~~ 158 (203)
+.++++ ....+++.|++++-+=.|.+.+. +- +.+++. .++.++... +.+.++.
T Consensus 102 ~l~~aG---~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~ 178 (200)
T COG0740 102 VLLMAG---DKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAE 178 (200)
T ss_pred HHHhcC---CCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHH
Confidence 666643 34457999999988777764221 11 000000 111111111 2346889
Q ss_pred HHHHcCCcceecCCcc
Q psy5160 159 AAAKKGYIDDIIEPRT 174 (203)
Q Consensus 159 ~~~~~G~iD~Vi~p~~ 174 (203)
++.+-|+||.|++..+
T Consensus 179 eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 179 EAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHcCCcceeccccc
Confidence 9999999999999643
No 141
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.004 Score=53.60 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=67.6
Q ss_pred CcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCch-hhhhh
Q psy5160 27 PGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYG-GAYAV 105 (203)
Q Consensus 27 gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~G-ga~~~ 105 (203)
-..++.+.+..+.|.++.+.+. .||..++||||..+- ....++++ +.+...|+.++|-..|.. |.+.+
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~-~~IdLii~TpGG~v~-------AA~~I~~~---l~~~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKD-KPIDLIIHTPGGLVD-------AAEQIARA---LREHPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCC-CceEEEEECCCCcHH-------HHHHHHHH---HHhCCCCEEEEECcccccHHHHHH
Confidence 3668999999999999988654 489999999999752 11123344 456678988888888875 45554
Q ss_pred hhccCCCcceEEecCCCeeeeeCHHH
Q psy5160 106 MSEKNLRSDVNYAWPTAEIAVMGSKG 131 (203)
Q Consensus 106 ~~~~~~~~d~~~a~~~a~i~v~gp~~ 131 (203)
+ .+|-++|.|++.+|...|..
T Consensus 138 L-----aADeIvM~p~a~LGpiDPqi 158 (285)
T PF01972_consen 138 L-----AADEIVMGPGAVLGPIDPQI 158 (285)
T ss_pred H-----hCCeEEECCCCccCCCCccc
Confidence 4 69999999999999888854
No 142
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.07 E-value=0.0051 Score=54.46 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCcccCHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEE
Q psy5160 16 LIQILKLNPKAPGCIDINAA----VKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI 91 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~----~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~i 91 (203)
.|.|+--+ |.|+.... +.+....+.+... --||.-+||||..+..... .+..+..+.+...|++
T Consensus 91 ~v~VI~~~----G~I~~~~~~~l~e~i~a~l~~A~~~-~aVvLridSpGG~v~~s~~-------a~~~l~~lr~~~kpVv 158 (330)
T PRK11778 91 RLFVLDFK----GDIDASEVESLREEITAILAVAKPG-DEVLLRLESPGGVVHGYGL-------AASQLQRLRDAGIPLT 158 (330)
T ss_pred eEEEEEEE----EEECCCcchhhHHHHHHHHHhccCC-CeEEEEEeCCCCchhHHHH-------HHHHHHHHHhcCCCEE
Confidence 46666544 44443322 2233333344332 4599999999998642111 1222444566789999
Q ss_pred EEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCH
Q psy5160 92 TVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 92 svv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
+.+-+-|..|+||..+ .+|-++|.|.+.++..|.
T Consensus 159 a~v~~~AASggY~iAs----aAD~I~A~P~a~vGSIGV 192 (330)
T PRK11778 159 VAVDKVAASGGYMMAC----VADKIIAAPFAIVGSIGV 192 (330)
T ss_pred EEECCchhhHHHHHHH----hCCEEEECCCCeEEeeee
Confidence 8888888788888887 699999999988776664
No 143
>KOG0016|consensus
Probab=96.97 E-value=0.092 Score=44.84 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=99.3
Q ss_pred cceeeeCCeEEEEEEe-CCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC------CCcHHH--------H-Hh
Q psy5160 7 GLQSSEKFNLIQILKL-NPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF------LPGLAQ--------E-HL 70 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~-d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~------~~g~~~--------E-~~ 70 (203)
.+-++-.+.+.-|+-| +|..--++..+...-+.|+.+.++...-=.+++.-+.|- +.+... | ..
T Consensus 8 ~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~ 87 (266)
T KOG0016|consen 8 EIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESD 87 (266)
T ss_pred ceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccch
Confidence 4455566666666666 776446788899999999998887655546665555442 221111 1 01
Q ss_pred HHH---HHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee------eCHHHHHHHHhcCch
Q psy5160 71 GII---RHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV------MGSKGAVAILYRKEK 141 (203)
Q Consensus 71 g~~---~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v------~gp~~~~~i~~~~~~ 141 (203)
-.. ..+...+.++.....|.|++|-|+++|-+....+ .+|.|+|.+.+.+.. -.||+.+.+.+....
T Consensus 88 ~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~----lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 88 KASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILP----LCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhh----hhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 111 1122255667789999999999999995554444 799999886654321 235555443321110
Q ss_pred hhhhhHHHHh--hhcCCHHHHHHcCCcceecCCcchHHHH
Q psy5160 142 DKSNYEVEYN--DKFRSPVAAAKKGYIDDIIEPRTTRMRI 179 (203)
Q Consensus 142 ~~~e~~~~~~--~~~~~~~~~~~~G~iD~Vi~p~~tR~~l 179 (203)
..+.+.|+- -+--++..+.+.|+|+.|...++.-+.+
T Consensus 164 -G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v 202 (266)
T KOG0016|consen 164 -GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEV 202 (266)
T ss_pred -chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHH
Confidence 111122211 0112456788999999999986544433
No 144
>PRK10949 protease 4; Provisional
Probab=96.79 E-value=0.056 Score=51.79 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=64.0
Q ss_pred CeEEEEEEeCCC------CCcccCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHh
Q psy5160 14 FNLIQILKLNPK------APGCIDINAAVKSARFIRFCD--AFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAE 85 (203)
Q Consensus 14 Gr~V~vva~d~~------~gG~~~~~~~~K~~r~i~~a~--~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~ 85 (203)
+-.|+||--+.+ ..|.++ ...+.+.++.|. ..=--||.-+|+||..+...++ +.+.+..+..
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~---~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~-------i~~~i~~~r~ 394 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVG---GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV-------IRAELAAARA 394 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcC---HHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHH-------HHHHHHHHHh
Confidence 345666655543 234444 455666666553 2335789999999986532222 2344444455
Q ss_pred CCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeee
Q psy5160 86 STVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV 126 (203)
Q Consensus 86 ~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v 126 (203)
...|+++.+-+-+..|+||..+ .+|.++|.|.+.+|.
T Consensus 395 ~gKPVvas~~~~aASggY~iA~----aad~I~a~p~t~tGS 431 (618)
T PRK10949 395 AGKPVVVSMGGMAASGGYWIST----PANYIVASPSTLTGS 431 (618)
T ss_pred cCCcEEEEECCCCccHHHHHHH----hcCEEEECCCCceee
Confidence 6789998777778888888887 699999999755443
No 145
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.58 E-value=0.0036 Score=52.35 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred EEEEeCCCCCcccCHHHHHHHHHHHHHH-HhCCCcEEEEecC--------CCCC--C-----cHHHHHhHHHH-HHHHHH
Q psy5160 18 QILKLNPKAPGCIDINAAVKSARFIRFC-DAFNIPIVTFIDV--------PGFL--P-----GLAQEHLGIIR-HGSKLL 80 (203)
Q Consensus 18 ~vva~d~~~gG~~~~~~~~K~~r~i~~a-~~~~lPlv~l~Dt--------~G~~--~-----g~~~E~~g~~~-~~a~~~ 80 (203)
-|.-|.|..--+.-+.....+.++...| +..++-+|.|.-. +|.+ + +...| .++-+ ..-.+-
T Consensus 31 kItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d-~~~~rLnvLdlQ 109 (282)
T COG0447 31 KITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDD-DGIPRLNVLDLQ 109 (282)
T ss_pred EEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCC-ccCcccchhhHH
Confidence 3444444322456666677777766555 4577888888731 1111 0 00001 00000 011122
Q ss_pred HHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHHHHH-HHhcC----chhhhhhHHHH--hhh
Q psy5160 81 YAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVA-ILYRK----EKDKSNYEVEY--NDK 153 (203)
Q Consensus 81 ~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~~~~-i~~~~----~~~~~e~~~~~--~~~ 153 (203)
+-+.....|+|++|-|=++||+..... .||.++|..+|.++-.||.+.+- -.|.. ..-.++++.|+ .-.
T Consensus 110 rlIR~~PKpViA~V~G~AiGGGhvlhv----vCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR 185 (282)
T COG0447 110 RLIRTMPKPVIAMVAGYAIGGGHVLHV----VCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCR 185 (282)
T ss_pred HHHHhCCcceEEEEeeEeccCccEEEE----EeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhh
Confidence 223457889999999999998776654 79999999999999999987532 00100 00112233331 112
Q ss_pred cCCHHHHHHcCCcceecCCcchHHHHHHHHH
Q psy5160 154 FRSPVAAAKKGYIDDIIEPRTTRMRIAQDLK 184 (203)
Q Consensus 154 ~~~~~~~~~~G~iD~Vi~p~~tR~~l~~~L~ 184 (203)
.-++..+.+.|+|..|++-+++-+.-.+|-+
T Consensus 186 ~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~ 216 (282)
T COG0447 186 QYDAEEALDMGLVNTVVPHADLEKETVQWAR 216 (282)
T ss_pred hccHHHHHhcCceeeeccHHHHHHHHHHHHH
Confidence 2467889999999999997665444444433
No 146
>PRK10949 protease 4; Provisional
Probab=93.06 E-value=2 Score=41.34 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHh-CCCc-EEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCch-hhhhhhhcc
Q psy5160 33 NAAVKSARFIRFCDA-FNIP-IVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYG-GAYAVMSEK 109 (203)
Q Consensus 33 ~~~~K~~r~i~~a~~-~~lP-lv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~G-ga~~~~~~~ 109 (203)
...+.+.+.++.|.+ .++- ||.=+|++|.... ..++.+.+.+..+.....|+++ ++..++ ++||..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~------a~~~eI~~ai~~fk~sGKpVvA--~~~~~~s~~YyLAS-- 164 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQ------PSMQYIGKALREFRDSGKPVYA--VGDSYSQGQYYLAS-- 164 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccH------HHHHHHHHHHHHHHHhCCeEEE--EecCccchhhhhhh--
Confidence 344578888876643 4443 4555677654211 1233345666666677889886 366555 5666654
Q ss_pred CCCcceEEecCCCeeeeeCHH
Q psy5160 110 NLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 110 ~~~~d~~~a~~~a~i~v~gp~ 130 (203)
.+|-+++.|.+.+++.|.-
T Consensus 165 --aAD~I~l~P~G~v~~~G~~ 183 (618)
T PRK10949 165 --FANKIYLSPQGVVDLHGFA 183 (618)
T ss_pred --hCCEEEECCCceEEEeeee
Confidence 6999999999998877753
No 147
>KOG1679|consensus
Probab=92.33 E-value=3.2 Score=35.03 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=81.7
Q ss_pred CCcccCHHHHHHHHHHHH-HHHhCCCcEEEEe-cC-----CCCCCcHH-----HHHhHHHHHHHHHHHHHHhCCCCEEEE
Q psy5160 26 APGCIDINAAVKSARFIR-FCDAFNIPIVTFI-DV-----PGFLPGLA-----QEHLGIIRHGSKLLYAYAESTVPKITV 93 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~-~a~~~~lPlv~l~-Dt-----~G~~~g~~-----~E~~g~~~~~a~~~~a~~~~~vP~isv 93 (203)
.--+++..-.+.+...++ +-...+.-+|.|- -+ .|+++.+. +|..-....+-.+|..+.+..+|+|+.
T Consensus 51 ~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAA 130 (291)
T KOG1679|consen 51 KKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAA 130 (291)
T ss_pred hhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceeh
Confidence 335666666666666664 3333444444442 22 35554322 232333344445666777899999999
Q ss_pred EcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH-------HHHHHHhcCchhhhhhHHH--HhhhcCCHHHHHHcC
Q psy5160 94 ITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK-------GAVAILYRKEKDKSNYEVE--YNDKFRSPVAAAKKG 164 (203)
Q Consensus 94 v~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~-------~~~~i~~~~~~~~~e~~~~--~~~~~~~~~~~~~~G 164 (203)
|-|-+.||+.-.. +.||+.++..++.++...-. +..+=+++- -.-.+++| |..+.-+..+++..|
T Consensus 131 idG~ALGGGLElA----LACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~--vg~alaKELIftarvl~g~eA~~lG 204 (291)
T KOG1679|consen 131 IDGAALGGGLELA----LACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRI--VGVALAKELIFTARVLNGAEAAKLG 204 (291)
T ss_pred hcchhcccchhhh----hhccceehhhhccccccccceeeecCCCccchhHHH--HhHHHHHhHhhhheeccchhHHhcc
Confidence 9999999877654 36899998887766542211 111111100 01122233 233334556788999
Q ss_pred CcceecCCcch
Q psy5160 165 YIDDIIEPRTT 175 (203)
Q Consensus 165 ~iD~Vi~p~~t 175 (203)
+|..++...++
T Consensus 205 lVnhvv~qnee 215 (291)
T KOG1679|consen 205 LVNHVVEQNEE 215 (291)
T ss_pred hHHHHHhcCcc
Confidence 99999986533
No 148
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=91.45 E-value=4 Score=38.99 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHH-hCCCcEEEE-ecC-CCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCc-hhhhhhhh
Q psy5160 32 INAAVKSARFIRFCD-AFNIPIVTF-IDV-PGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAY-GGAYAVMS 107 (203)
Q Consensus 32 ~~~~~K~~r~i~~a~-~~~lPlv~l-~Dt-~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~-Gga~~~~~ 107 (203)
+.+...+.+.++.|. ..++-=|.| +|+ +|..+. ..+.+.+.+..+.....|+++.. ..+ -++||..+
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~-------~~~ei~~ai~~fk~sgKpVvA~~--~~~~s~~YylAs 145 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSP-------HLVEIGSALSEFKDSGKPVYAYG--TNYSQGQYYLAS 145 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHH-------HHHHHHHHHHHHHhcCCeEEEEE--ccccchhhhhhh
Confidence 346678888887664 455655555 564 454332 23345666666777889998853 333 35666654
Q ss_pred ccCCCcceEEecCCCeeeeeCH
Q psy5160 108 EKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 108 ~~~~~~d~~~a~~~a~i~v~gp 129 (203)
.+|-+++-|.+.+++.|.
T Consensus 146 ----~AD~I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 146 ----FADEIILNPMGSVDLHGF 163 (584)
T ss_pred ----hCCEEEECCCceEEeece
Confidence 699999999998877664
No 149
>KOG1682|consensus
Probab=88.56 E-value=2.3 Score=35.57 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeC---------HHH-HHHHHhcCch
Q psy5160 72 IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMG---------SKG-AVAILYRKEK 141 (203)
Q Consensus 72 ~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~g---------p~~-~~~i~~~~~~ 141 (203)
..+..++++..+.+..||+|+-|-|-+...+.-... .+|++++..++.+.+-| |.+ .++++.|
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVa----SCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpR--- 182 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVA----SCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPR--- 182 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEE----eeeEEEEecCccccCCCCceeeEecCcchhHhhhcch---
Confidence 344556666667789999999999865544333333 48998876665544322 222 2223322
Q ss_pred hhhhhHHHH--hhhcCCHHHHHHcCCcceecCCcchHHHHHH
Q psy5160 142 DKSNYEVEY--NDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQ 181 (203)
Q Consensus 142 ~~~e~~~~~--~~~~~~~~~~~~~G~iD~Vi~p~~tR~~l~~ 181 (203)
..+.++ ..+--+.+.+..+|++..|++.+++...+.+
T Consensus 183 ---kva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~ 221 (287)
T KOG1682|consen 183 ---KVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEE 221 (287)
T ss_pred ---hHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHH
Confidence 111111 1111345678899999999998776554433
No 150
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=88.43 E-value=0.62 Score=36.42 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=29.3
Q ss_pred HhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCH
Q psy5160 84 AESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGS 129 (203)
Q Consensus 84 ~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp 129 (203)
.+...|+++.+-+-+..+++++.+ .+|-++|.|.+.++..|.
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs----~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLAS----AADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHT----TSSEEEE-TT-EEE---E
T ss_pred cccCCeEEEEECCcchhHHHHHHH----cCCEEEecCCCEEEEeCh
Confidence 457899999998888877888876 699999999998887664
No 151
>KOG1681|consensus
Probab=88.40 E-value=0.19 Score=42.58 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=89.4
Q ss_pred ccccccee--eeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHH-HHHhCCCcEEEEecC-----CCCCCcHH--------
Q psy5160 3 AYKSGLQS--SEKFNLIQILKLNPKAPGCIDINAAVKSARFIR-FCDAFNIPIVTFIDV-----PGFLPGLA-------- 66 (203)
Q Consensus 3 ~~~~~~~~--~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~-~a~~~~lPlv~l~Dt-----~G~~~g~~-------- 66 (203)
+|||-.-+ +.+-.-.-|.-|.|..=-++.-+-=+.+-..++ +++....-.|.|.-. .|.+....
T Consensus 17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~ 96 (292)
T KOG1681|consen 17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP 96 (292)
T ss_pred ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence 46653333 233333445556665223455555555555554 444445555555422 24332211
Q ss_pred --HH--HhH-----HHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH--HHHHH
Q psy5160 67 --QE--HLG-----IIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK--GAVAI 135 (203)
Q Consensus 67 --~E--~~g-----~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~--~~~~i 135 (203)
.+ +.| +++.+...+.++-++..|+|+.|.|.|+|++.-... .||+.|+..+|.+.|=.-+ -++.+
T Consensus 97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiT----AcDIRycsqDAffsvkEVDvglaADv 172 (292)
T KOG1681|consen 97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLIT----ACDIRYCSQDAFFSVKEVDVGLAADV 172 (292)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhcccccccee----ecceeeecccceeeeeeeeeehhhch
Confidence 11 111 122333445556689999999999999998776654 6999999999988763322 22222
Q ss_pred HhcCchh----hhhhHHH--HhhhcCCHHHHHHcCCcceecCCc
Q psy5160 136 LYRKEKD----KSNYEVE--YNDKFRSPVAAAKKGYIDDIIEPR 173 (203)
Q Consensus 136 ~~~~~~~----~~e~~~~--~~~~~~~~~~~~~~G~iD~Vi~p~ 173 (203)
..-..+. .+....+ +....-++-++.+.|+|..|.+..
T Consensus 173 GTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 173 GTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred hhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 2211110 0111111 222223455688899999998853
No 152
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=72.11 E-value=8.1 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCCcEEEEecCCCCCCcHHHHH--hHHHHHHHHHHHHHHhCCCCEEEEEc
Q psy5160 48 FNIPIVTFIDVPGFLPGLAQEH--LGIIRHGSKLLYAYAESTVPKITVIT 95 (203)
Q Consensus 48 ~~lPlv~l~Dt~G~~~g~~~E~--~g~~~~~a~~~~a~~~~~vP~isvv~ 95 (203)
.++|+++|.|+.|-+.|+.-|. .|+...+..+.+.-.....-.+++|+
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVT 51 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVT 51 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEE
Confidence 5799999999999999977664 45433333333321223344566654
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=71.08 E-value=14 Score=34.12 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=48.9
Q ss_pred cccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVM 106 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~ 106 (203)
-.-|..++..++++|+.+|+.+ +-+|.+.-.+| .+ ++=|.--- =.+.+++.++++|+||.|- +-.= +..
T Consensus 171 ~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG-Si--EDLW~FNd---E~vaRAi~~s~iPvISAVG-HEtD---~tL 240 (440)
T COG1570 171 LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG-SI--EDLWAFND---EIVARAIAASRIPVISAVG-HETD---FTL 240 (440)
T ss_pred cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc-hH--HHHhccCh---HHHHHHHHhCCCCeEeecc-cCCC---ccH
Confidence 3457788899999999999988 55555554444 32 21111100 1456678899999999553 2211 111
Q ss_pred hccCCCcceEEecCCC
Q psy5160 107 SEKNLRSDVNYAWPTA 122 (203)
Q Consensus 107 ~~~~~~~d~~~a~~~a 122 (203)
+ -+-+|+.-.+|++
T Consensus 241 ~--DfVAD~RApTPTa 254 (440)
T COG1570 241 A--DFVADLRAPTPTA 254 (440)
T ss_pred H--HhhhhccCCCchH
Confidence 1 2235666667663
No 154
>KOG0259|consensus
Probab=58.87 E-value=14 Score=33.72 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=38.2
Q ss_pred ccceeeeCCeEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEE
Q psy5160 6 SGLQSSEKFNLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVT 54 (203)
Q Consensus 6 ~~~~~~i~Gr~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~ 54 (203)
+|+..-+|-.+|+++.+||. -|+..+.++.+|++ ++|.+.++|||.
T Consensus 190 ~~veal~DENT~AivviNP~NPcGnVys~~HL~kia---e~A~klgi~vIa 237 (447)
T KOG0259|consen 190 DGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIA---ETAKKLGIMVIA 237 (447)
T ss_pred HHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHH---HHHHHhCCeEEe
Confidence 35556688899999999998 89999999998875 567799999874
No 155
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.16 E-value=52 Score=28.51 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHHHHHHHHhCC----CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhh
Q psy5160 29 CIDINAAVKSARFIRFCDAFN----IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYA 104 (203)
Q Consensus 29 ~~~~~~~~K~~r~i~~a~~~~----lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~ 104 (203)
.-|..+...+++.++.+++.+ .-+|.++=.+|.. ++=+.--- -.+.++++++.+|+||-| |+-.=-...
T Consensus 51 vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~---eDL~~FN~---e~varai~~~~~PvisaI-GHe~D~ti~ 123 (319)
T PF02601_consen 51 VQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI---EDLWAFND---EEVARAIAASPIPVISAI-GHETDFTIA 123 (319)
T ss_pred ccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh---HHhcccCh---HHHHHHHHhCCCCEEEec-CCCCCchHH
Confidence 457788899999999888765 7789999888763 11110000 145566788999999844 433221111
Q ss_pred hhhccCCCcceEEecCCC
Q psy5160 105 VMSEKNLRSDVNYAWPTA 122 (203)
Q Consensus 105 ~~~~~~~~~d~~~a~~~a 122 (203)
= +-+|....+|++
T Consensus 124 D-----~vAd~ra~TPta 136 (319)
T PF02601_consen 124 D-----FVADLRAPTPTA 136 (319)
T ss_pred H-----HHHHhhCCCHHH
Confidence 1 246777777774
No 156
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=51.13 E-value=57 Score=28.61 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHHHH-HHHHhCCCcEEEEecCCCCCCcHHHHH-hHHHHHHHHHHHHHHhCCCCEEEEEcCCCc
Q psy5160 35 AVKSARFI-RFCDAFNIPIVTFIDVPGFLPGLAQEH-LGIIRHGSKLLYAYAESTVPKITVITRKAY 99 (203)
Q Consensus 35 ~~K~~r~i-~~a~~~~lPlv~l~Dt~G~~~g~~~E~-~g~~~~~a~~~~a~~~~~vP~isvv~g~~~ 99 (203)
.+.+++.+ ++++++++-.|.++|.+|=.+....|. .+.--.=+-.+.++.....|++..++|...
T Consensus 102 v~~l~~al~~l~~~~~iD~Ii~VDvGgDvLa~G~E~~L~SPlaDa~sLAal~~l~~~~~l~v~G~G~ 168 (297)
T PF06626_consen 102 VQGLARALRELAEKLGIDAIILVDVGGDVLARGDEPGLGSPLADAISLAALAKLEEPVILAVIGFGV 168 (297)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEecCCceEeecCccccCChHHHHHHHHHHHhcCCceEEEEEeCCc
Confidence 35566666 488899999999999999866544553 232222223344555666799999999765
No 157
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=49.59 E-value=45 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
-..++|.|- ++. -..++..+|.+.++|++++-
T Consensus 31 ~~v~iA~Da------~~~---vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 31 TSLIIAEDV------EVY---LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred eEEEEeCCC------CHH---HHHHHHHHHHHcCCCEEEEC
Confidence 456777773 222 34588899999999999864
No 158
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.44 E-value=45 Score=23.24 Aligned_cols=35 Identities=3% Similarity=-0.020 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
+.-...|+|+|.. + .-..++.++|...++|++++-
T Consensus 26 gkaklViiA~D~~------~---~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 26 GSVKEVVVAEDAD------P---RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred CCeeEEEEECCCC------H---HHHHHHHHHHHHcCCCEEEEC
Confidence 3345678888852 2 223356789999999998876
No 159
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.25 E-value=75 Score=28.95 Aligned_cols=83 Identities=19% Similarity=0.071 Sum_probs=52.3
Q ss_pred cccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhh
Q psy5160 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMS 107 (203)
Q Consensus 28 G~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~ 107 (203)
-.-|..+...+++.++.+++.+.-+|.++=.+|.. ++=+.--- -.+.++++++.+|+||-| |+-.=-...
T Consensus 171 ~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~---eDL~~Fn~---e~v~~ai~~~~~Pvis~I-GHE~D~tl~--- 240 (438)
T PRK00286 171 LVQGEGAAASIVAAIERANARGEDVLIVARGGGSL---EDLWAFND---EAVARAIAASRIPVISAV-GHETDFTIA--- 240 (438)
T ss_pred cCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH---HHhhccCc---HHHHHHHHcCCCCEEEec-cCCCCccHH---
Confidence 34567788899999998888777889999888752 11110000 145666788999999854 332211111
Q ss_pred ccCCCcceEEecCCC
Q psy5160 108 EKNLRSDVNYAWPTA 122 (203)
Q Consensus 108 ~~~~~~d~~~a~~~a 122 (203)
-+-+|....+|++
T Consensus 241 --D~vAd~ra~TPta 253 (438)
T PRK00286 241 --DFVADLRAPTPTA 253 (438)
T ss_pred --HHhhhccCCChHH
Confidence 2246777777774
No 160
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=46.60 E-value=32 Score=29.45 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=25.8
Q ss_pred eCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy5160 12 EKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 12 i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~ 59 (203)
+++.|=.++..|+. .+| .++.=|.+.|||||.|+||-
T Consensus 153 m~~~Pd~l~ViDp~---------~e~--iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 153 MKGLPDVLFVIDPR---------KEK--IAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred ccCCCCEEEEeCCc---------HhH--HHHHHHHHcCCCEEEEecCC
Confidence 34456677777765 222 45677888999999999985
No 161
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=45.97 E-value=46 Score=27.99 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=7.0
Q ss_pred cEEEEecCCCCCC
Q psy5160 51 PIVTFIDVPGFLP 63 (203)
Q Consensus 51 Plv~l~Dt~G~~~ 63 (203)
|=|.|.|=|-..+
T Consensus 161 P~iilADEPTgnL 173 (226)
T COG1136 161 PKIILADEPTGNL 173 (226)
T ss_pred CCeEEeeCccccC
Confidence 5555556555444
No 162
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=42.89 E-value=24 Score=29.09 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy5160 39 ARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 39 ~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
..+++-|.+.|||+|.|+||-.
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCC
Confidence 3677889999999999999864
No 163
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=42.65 E-value=21 Score=31.72 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
.+.|=.|+..|+. +=..+++=|.+.|||+|.|+||--
T Consensus 150 ~~~Pd~viv~d~~-----------~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 150 GGLPDLLFVIDTN-----------KEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccCCCEEEEeCCc-----------cchHHHHHHHHcCCCEEEEeeCCC
Confidence 3456666666654 123567889999999999999974
No 164
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=42.43 E-value=22 Score=29.74 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=26.5
Q ss_pred CeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy5160 14 FNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 14 Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
..|=.|+..|+. +=..+++=|.+.++|+|.++||--
T Consensus 154 ~~Pd~vii~d~~-----------~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPV-----------KEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCC-----------ccHHHHHHHHHcCCCEEEEeeCCC
Confidence 456666666653 223567889999999999999965
No 165
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.41 E-value=83 Score=28.89 Aligned_cols=82 Identities=16% Similarity=0.044 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhh
Q psy5160 29 CIDINAAVKSARFIRFCDAFN-IPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMS 107 (203)
Q Consensus 29 ~~~~~~~~K~~r~i~~a~~~~-lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~ 107 (203)
.-|..++..+++.++.+++.+ .-+|.+.-.+|.. ++=+.--- -.+.++++++.+|+||-| |+-.=-...=
T Consensus 166 vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~---eDL~~Fn~---e~~~rai~~~~~Pvis~i-GHe~D~ti~D-- 236 (432)
T TIGR00237 166 VQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL---EDLWSFND---EKVARAIFLSKIPIISAV-GHETDFTISD-- 236 (432)
T ss_pred ccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH---HHhhhcCc---HHHHHHHHcCCCCEEEec-CcCCCccHHH--
Confidence 456777888899998777644 6788888777763 11111000 145556789999999954 3322111111
Q ss_pred ccCCCcceEEecCCC
Q psy5160 108 EKNLRSDVNYAWPTA 122 (203)
Q Consensus 108 ~~~~~~d~~~a~~~a 122 (203)
+-+|....+|++
T Consensus 237 ---~vAd~ra~TPta 248 (432)
T TIGR00237 237 ---FVADLRAPTPSA 248 (432)
T ss_pred ---HhhhccCCCcHH
Confidence 246777777774
No 166
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.03 E-value=24 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy5160 39 ARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 39 ~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
..+++=|.+.|||+|.|+||-.
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCC
Confidence 3677889999999999999964
No 167
>CHL00067 rps2 ribosomal protein S2
Probab=41.93 E-value=24 Score=29.61 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
...|=.|+..|+. +=..+++-|.+.|+|+|.++||--
T Consensus 159 ~~~P~~iiv~d~~-----------~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 159 TKLPDIVIIIDQQ-----------EEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred ccCCCEEEEeCCc-----------ccHHHHHHHHHcCCCEEEEEeCCC
Confidence 3457677777764 112678899999999999999964
No 168
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.71 E-value=25 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy5160 39 ARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 39 ~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
..+++-|.+.++|+|.++||.-
T Consensus 140 ~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 140 HQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred hHHHHHHHHcCCCEEEEecCCC
Confidence 3667889999999999999973
No 169
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=41.46 E-value=65 Score=28.61 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=34.2
Q ss_pred eCCeEEEEEEeCCC---CCcccCHH--------------------------HHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy5160 12 EKFNLIQILKLNPK---APGCIDIN--------------------------AAVKSARFIRFCDAFNIPIVTFIDVPGFL 62 (203)
Q Consensus 12 i~Gr~V~vva~d~~---~gG~~~~~--------------------------~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~ 62 (203)
-.|+.|+|++.|+. .||++--+ -+......+++++..+..+| |+||+|.+
T Consensus 82 ~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~v-iieT~Gv~ 160 (332)
T PRK09435 82 EQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVI-LVETVGVG 160 (332)
T ss_pred HCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEE-EEECCCCc
Confidence 45889999999986 56654211 24555666777777777655 45888886
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=41.29 E-value=87 Score=25.36 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=10.0
Q ss_pred eeCCeEEEEEEeCCC
Q psy5160 11 SEKFNLIQILKLNPK 25 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~ 25 (203)
..+|+.|++++.|..
T Consensus 26 ~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 26 KLKGKKVALISADTY 40 (196)
T ss_dssp HHTT--EEEEEESTS
T ss_pred hhccccceeecCCCC
Confidence 344999999999964
No 171
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=40.69 E-value=24 Score=30.25 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
...|=.|+..|+. +=..+++=|.+.|||+|.|+||--
T Consensus 155 ~~~Pd~iii~d~~-----------~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 155 GGLPDALFVVDPN-----------KEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred ccCCCEEEEeCCC-----------ccHHHHHHHHHhCCCEEEEeeCCC
Confidence 3456666666653 123567889999999999999964
No 172
>PRK09732 hypothetical protein; Provisional
Probab=40.60 E-value=64 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHH-HHHHhCCCcE-EEEecCCCCCC
Q psy5160 30 IDINAAVKSARFI-RFCDAFNIPI-VTFIDVPGFLP 63 (203)
Q Consensus 30 ~~~~~~~K~~r~i-~~a~~~~lPl-v~l~Dt~G~~~ 63 (203)
++.+.++++.... +.|.+.+.|+ |.++|..|..+
T Consensus 7 Ltl~~A~~~~~aA~~~A~~~g~~v~iaVvD~~G~l~ 42 (134)
T PRK09732 7 LSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLL 42 (134)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCEE
Confidence 6677788877555 7999999999 88999999843
No 173
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=39.80 E-value=33 Score=24.02 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 15 NLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 15 r~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
....|+|.|-. +....+ ++..+|.+.++|++++-
T Consensus 32 ~~lvilA~d~~------~~~~~~--~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 32 AKLVILAEDCS------PDSIKK--HLPALCEEKNIPYVFVP 65 (95)
T ss_dssp ESEEEEETTSS------SGHHHH--HHHHHHHHTTEEEEEES
T ss_pred CcEEEEcCCCC------hhhhcc--cchhheeccceeEEEEC
Confidence 34567777742 333333 56789999999998775
No 174
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=39.36 E-value=29 Score=28.59 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy5160 39 ARFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 39 ~r~i~~a~~~~lPlv~l~Dt~G 60 (203)
..+++-|.+.++|+|.|+||.-
T Consensus 156 ~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 156 KNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp HHHHHHHHHTTS-EEEEESTTS
T ss_pred chhHHHHHhcCceEEEeecCCC
Confidence 4678889999999999999963
No 175
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.36 E-value=87 Score=25.79 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEE-ecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhc
Q psy5160 33 NAAVKSARFIRFCDAFNIPIVTF-IDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSE 108 (203)
Q Consensus 33 ~~~~K~~r~i~~a~~~~lPlv~l-~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~ 108 (203)
+-+.+++|....+-..+-|||.+ .|+||.. +| ++ +..+.++ .++| +|+|+++-|+||.++-
T Consensus 88 d~gdRlars~~~a~~~~~~VliIg~DcP~lt----~e---lL---a~a~taL--~~~p---aVLGpa~dGGy~llgL 149 (211)
T COG3222 88 DLGDRLARSHVDAFDGSYPVLIIGMDCPGLT----AE---LL---ADAFTAL--LQIP---AVLGPAFDGGYYLLGL 149 (211)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEecCCCccC----HH---HH---HHHHHHH--hcCc---ceecccccCcEEEEEe
Confidence 45667777776665555676544 7999984 44 22 3333332 3344 6899999999999973
No 176
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.30 E-value=53 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=18.3
Q ss_pred CeEEEEEEeCCCCCcccCHHHHHHHHHHH-HHHHhCCCcEEEE
Q psy5160 14 FNLIQILKLNPKAPGCIDINAAVKSARFI-RFCDAFNIPIVTF 55 (203)
Q Consensus 14 Gr~V~vva~d~~~gG~~~~~~~~K~~r~i-~~a~~~~lPlv~l 55 (203)
++|-..+|++|| |.++.+.++|++.++ .+-.+++.-+|.+
T Consensus 163 ~~P~vLfADEPT--GNLD~~Tg~~iaDLlF~lnre~G~TlVlV 203 (228)
T COG4181 163 GRPDVLFADEPT--GNLDRATGDKIADLLFALNRERGTTLVLV 203 (228)
T ss_pred CCCCEEeccCCC--CCcchhHHHHHHHHHHHHhhhcCceEEEE
Confidence 444444455544 445555554444444 3333444444433
No 177
>KOG1470|consensus
Probab=38.54 E-value=1.9e+02 Score=25.74 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=47.8
Q ss_pred cccccceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHH-HHHHhCCCc-----EEEEecCCCCCCcHHHHHhHHHHHH
Q psy5160 3 AYKSGLQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFI-RFCDAFNIP-----IVTFIDVPGFLPGLAQEHLGIIRHG 76 (203)
Q Consensus 3 ~~~~~~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i-~~a~~~~lP-----lv~l~Dt~G~~~g~~~E~~g~~~~~ 76 (203)
+|..| .-.+||||.++.-.+..-+..+...-.+..=++ +-| ...+| ++.|+|-.||..+ ..-.+..+..
T Consensus 100 ~yi~G--~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~A-i~~lp~~qe~~~~L~D~~~fs~s--N~d~~~~k~~ 174 (324)
T KOG1470|consen 100 AYILG--HDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENA-ILFLPPGQEQFVWLFDLTGFSMS--NPDIKFLKEL 174 (324)
T ss_pred EEEec--ccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCcceEEEEEecccCccc--CCCcHHHHHH
Confidence 57777 567899999996554433566766666665444 322 12222 7999999999765 2223455556
Q ss_pred HHHHHHH
Q psy5160 77 SKLLYAY 83 (203)
Q Consensus 77 a~~~~a~ 83 (203)
...++.+
T Consensus 175 ~~~lq~h 181 (324)
T KOG1470|consen 175 LHILQDH 181 (324)
T ss_pred HHHHHHh
Confidence 6666554
No 178
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=37.67 E-value=86 Score=22.59 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy5160 15 NLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 15 r~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt 58 (203)
-...|+|+|.. + .-..++.++|..+++|++.+..|
T Consensus 33 aklViiA~D~~------~---~~~~~i~~~c~~~~Ip~~~~~~t 67 (99)
T PRK01018 33 AKLVIVASNCP------K---DIKEDIEYYAKLSGIPVYEYEGS 67 (99)
T ss_pred ceEEEEeCCCC------H---HHHHHHHHHHHHcCCCEEEECCC
Confidence 35677777742 2 22346678888999998776533
No 179
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=37.56 E-value=30 Score=29.62 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCcEEEEecCCC
Q psy5160 40 RFIRFCDAFNIPIVTFIDVPG 60 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~G 60 (203)
.+++=|.+.|||+|.|+||--
T Consensus 132 qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 132 QAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred HHHHHHHHhCCCEEEEecCCC
Confidence 677889999999999999954
No 180
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=36.98 E-value=43 Score=23.61 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCcccCHHHHHHHHHHHHHHHhCCCcE
Q psy5160 26 APGCIDINAAVKSARFIRFCDAFNIPI 52 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~~~lPl 52 (203)
.||.+-..-.+.+.++.++|.++++|+
T Consensus 42 RgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 42 RGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 599999999999999999999999984
No 181
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=36.42 E-value=52 Score=23.16 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy5160 35 AVKSARFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 35 ~~K~~r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
..-..|.+++|.+.++|++.+++.-..
T Consensus 39 ~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 39 LADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 344556678889999999988876443
No 182
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=35.63 E-value=2.6e+02 Score=23.19 Aligned_cols=85 Identities=13% Similarity=0.005 Sum_probs=58.9
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHH---HhHHHHHHHHHHHHHHhC-CC
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQE---HLGIIRHGSKLLYAYAES-TV 88 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E---~~g~~~~~a~~~~a~~~~-~v 88 (203)
+.+.+.|+..-++ .-..++..+++++.....-.+.||+|-..+.|-..+.... .......+.+++..+.+. ..
T Consensus 16 ~~~~vlvfVHGyn---~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~ 92 (233)
T PF05990_consen 16 PDKEVLVFVHGYN---NSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGI 92 (233)
T ss_pred CCCeEEEEEeCCC---CCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 4678888888774 4466777888888887777778888888887764443222 223345667777777766 77
Q ss_pred CEEEEEcCCCchh
Q psy5160 89 PKITVITRKAYGG 101 (203)
Q Consensus 89 P~isvv~g~~~Gg 101 (203)
..|. +++.+.|+
T Consensus 93 ~~I~-ilaHSMG~ 104 (233)
T PF05990_consen 93 KRIH-ILAHSMGN 104 (233)
T ss_pred ceEE-EEEeCchH
Confidence 8887 55577776
No 183
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=35.52 E-value=56 Score=26.52 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=28.3
Q ss_pred HcCCcceecCCcchHHHHHHHHHHhhcCCC------CCCCCCCCCCC
Q psy5160 162 KKGYIDDIIEPRTTRMRIAQDLKFLLNKKQ------DNPYKKHGNIP 202 (203)
Q Consensus 162 ~~G~iD~Vi~p~~tR~~l~~~L~~l~~~~~------~~p~~~~~~~~ 202 (203)
.--.||+|+|...|-+++.+.|..-..+.. .+|.+|+.+++
T Consensus 95 dVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r~~~i~ 141 (178)
T COG0634 95 DVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIE 141 (178)
T ss_pred eEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccccCCCC
Confidence 355799999999998888888864322221 46666666554
No 184
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=34.99 E-value=70 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=35.8
Q ss_pred eeeeCCeEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy5160 9 QSSEKFNLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~ 59 (203)
++++.+..-+|..+.|+ .|-.+..+...|+. .+|..+|+|+| +|..
T Consensus 173 ~l~i~e~~g~ic~SRPtNPTGNVlTdeE~~kld---alA~~~giPli--IDnA 220 (417)
T COG3977 173 HLHIGESTGAICVSRPTNPTGNVLTDEELAKLD---ALARQHGIPLI--IDNA 220 (417)
T ss_pred HcccccccceEEecCCCCCCCCcccHHHHHHHH---HHhhhcCCcEE--Eecc
Confidence 56777887788888888 78889888877764 57889999986 4654
No 185
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=34.95 E-value=33 Score=25.51 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCcEEEEecCCCC
Q psy5160 40 RFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
.++++|++.++||+.+-+.-.|
T Consensus 90 ~~i~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 90 EIIELADELGLPLIEIPWEVPF 111 (123)
T ss_pred HHHHHHHHcCCCEEEeCCCCCH
Confidence 5679999999999999876444
No 186
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=34.44 E-value=86 Score=24.39 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=23.4
Q ss_pred EEEEEEeCCC-CCcccCHHHHHHHHHHHH-HHHhCCCcEEEE
Q psy5160 16 LIQILKLNPK-APGCIDINAAVKSARFIR-FCDAFNIPIVTF 55 (203)
Q Consensus 16 ~V~vva~d~~-~gG~~~~~~~~K~~r~i~-~a~~~~lPlv~l 55 (203)
+..||.-.|. +-|..++ .++++-+|.+ +..++++|+++.
T Consensus 54 ~~~vVVGlP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~ 94 (141)
T COG0816 54 VDTVVVGLPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLW 94 (141)
T ss_pred CCEEEEecCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEE
Confidence 4455555555 6667777 5555556664 555677776653
No 187
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=34.38 E-value=1.7e+02 Score=23.05 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=44.8
Q ss_pred EEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHHH
Q psy5160 52 IVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKG 131 (203)
Q Consensus 52 lv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~~ 131 (203)
.+.+.|--|-.+..+ .+|+.+..........++.++|+++|-.--... .+|.+++...-+ =|-.
T Consensus 69 ~~i~LDe~Gk~~sS~--------~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~----~a~~~lSLS~mT----fpH~ 132 (157)
T PRK00103 69 RVIALDERGKQLSSE--------EFAQELERWRDDGRSDVAFVIGGADGLSPAVKK----RADQSLSLSKLT----LPHQ 132 (157)
T ss_pred EEEEEcCCCCcCCHH--------HHHHHHHHHHhcCCccEEEEEcCccccCHHHHH----hcCceEEeccCC----CcHH
Confidence 577788888765421 235666655666777899999999996544443 588888766533 2444
Q ss_pred HHHHH
Q psy5160 132 AVAIL 136 (203)
Q Consensus 132 ~~~i~ 136 (203)
.++++
T Consensus 133 larlv 137 (157)
T PRK00103 133 LVRVL 137 (157)
T ss_pred HHHHH
Confidence 55554
No 188
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.86 E-value=1.5e+02 Score=24.85 Aligned_cols=11 Identities=0% Similarity=-0.278 Sum_probs=5.9
Q ss_pred CeEEEEEEeCC
Q psy5160 14 FNLIQILKLNP 24 (203)
Q Consensus 14 Gr~V~vva~d~ 24 (203)
|..+|+.-|-.
T Consensus 108 G~kaGlalnP~ 118 (229)
T PRK09722 108 GMKVGLVLNPE 118 (229)
T ss_pred CCCEEEEeCCC
Confidence 45556555543
No 189
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=32.26 E-value=1.5e+02 Score=27.50 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=17.4
Q ss_pred HHHHhCCCcEEEEecCCCCCC
Q psy5160 43 RFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 43 ~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
++|..+++|||.++|..|..-
T Consensus 105 ~lAk~l~~PVvLVid~~~~s~ 125 (451)
T COG1797 105 DLAKLLGAPVVLVVDASGLSR 125 (451)
T ss_pred HHHHHhCCCEEEEEeCcchhH
Confidence 566679999999999988753
No 190
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=31.96 E-value=75 Score=23.84 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHH-HHHHhCCCcE-EEEecCCCCCC
Q psy5160 30 IDINAAVKSARFI-RFCDAFNIPI-VTFIDVPGFLP 63 (203)
Q Consensus 30 ~~~~~~~K~~r~i-~~a~~~~lPl-v~l~Dt~G~~~ 63 (203)
++.+.++++.... +.|.+.+.|+ |.++|..|..+
T Consensus 3 l~~~~A~~l~~~a~~~a~~~g~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 3 LTLEDAWKLGDAAVEEARERGLPVSIAVVDAGGHLL 38 (132)
T ss_dssp E-HHHHHHHHHHHHHHHHHTT---EEEEEETTS-EE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEEEECCCCEE
Confidence 5677788887666 7999999885 77789998743
No 191
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=31.81 E-value=44 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=22.1
Q ss_pred ccccccceeeeCCeEEEEEEeCCC
Q psy5160 2 SAYKSGLQSSEKFNLIQILKLNPK 25 (203)
Q Consensus 2 ~~~~~~~~~~i~Gr~V~vva~d~~ 25 (203)
++++.|||+.+.+..|.|=|-|+.
T Consensus 48 ~~f~qGL~V~vy~drV~v~A~Df~ 71 (158)
T PF13285_consen 48 ESFKQGLQVEVYGDRVVVEARDFK 71 (158)
T ss_pred cccccceEEEEeCCeEEEEEEecc
Confidence 468899999999999999999986
No 192
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=31.70 E-value=1e+02 Score=30.88 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred CeEEEEEEeCCC---CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 14 FNLIQILKLNPK---APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 14 Gr~V~vva~d~~---~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
+..|+.+--+|- .||.+-+. ..-..++.++|+++++++|+=-=..|| |.| +++..-....+|
T Consensus 582 ~~~iAAvI~EPviqGaGGmi~~~-~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG-------------~~fa~e~~gv~P 647 (817)
T PLN02974 582 NGHIAALIIEPVLHGAGGMLLID-PLFQRALVQVCRSRKIPVIFDEVFTGLWRLG-------------VESAWELLGCKP 647 (817)
T ss_pred CCCEEEEEEeccccCCCCcccCC-HHHHHHHHHHHHHhCCEEEEeecccCCCccc-------------chhhHHhcCCCC
Confidence 455666666663 55665433 233345668999999999874445566 543 333333346689
Q ss_pred EEEEEcCCCchhhhhhh
Q psy5160 90 KITVITRKAYGGAYAVM 106 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~~ 106 (203)
-| +++||+.+|++.-+
T Consensus 648 DI-i~~gKgLtgG~~Pl 663 (817)
T PLN02974 648 DI-ACYAKLLTGGLVPL 663 (817)
T ss_pred CE-EeecccccCCCCcc
Confidence 99 48889988876433
No 193
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=30.94 E-value=1e+02 Score=27.23 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHhhcC
Q psy5160 172 PRTTRMRIAQDLKFLLNK 189 (203)
Q Consensus 172 p~~tR~~l~~~L~~l~~~ 189 (203)
|+.-+++|..+++.+..+
T Consensus 293 P~~F~~~l~~a~~~~~~~ 310 (345)
T PF14307_consen 293 PELFKKWLREAIRRVKEN 310 (345)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 455666777777766554
No 194
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=30.92 E-value=1.2e+02 Score=22.27 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy5160 15 NLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 15 r~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt 58 (203)
-...|+|+|.. +.. .-.+.++|...++|++.+..|
T Consensus 42 aklViiA~D~~------~~~---kkki~~~~~~~~Vpv~~~~~t 76 (108)
T PTZ00106 42 AKLVIISNNCP------PIR---RSEIEYYAMLSKTGVHHYAGN 76 (108)
T ss_pred eeEEEEeCCCC------HHH---HHHHHHHHhhcCCCEEEeCCC
Confidence 34567777742 222 335567888899999876543
No 195
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=30.24 E-value=2.1e+02 Score=22.08 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.4
Q ss_pred CCCcEEEEecCCCCCCcHH
Q psy5160 48 FNIPIVTFIDVPGFLPGLA 66 (203)
Q Consensus 48 ~~lPlv~l~Dt~G~~~g~~ 66 (203)
..+||++++|++|-+-+..
T Consensus 2 ~~~~v~~llD~SgSM~~~~ 20 (176)
T cd01464 2 RRLPIYLLLDTSGSMAGEP 20 (176)
T ss_pred CCCCEEEEEECCCCCCChH
Confidence 4689999999999886543
No 196
>PRK08227 autoinducer 2 aldolase; Validated
Probab=30.01 E-value=1.8e+02 Score=24.97 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 32 INAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 32 ~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
.+..+.+.+..+-|+++|+|+|.+.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla~~ 147 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMAVT 147 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4445677888899999999999854
No 197
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=29.78 E-value=47 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=18.8
Q ss_pred HHHHHHhCCCcEEEEecCCCCCC
Q psy5160 41 FIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 41 ~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
.++.|.++++|++++.|..=..+
T Consensus 2 i~~~a~r~~i~vi~Van~~h~~~ 24 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYSHRLP 24 (130)
T ss_pred HHHHHHHHCCEEEEEeCCCccCC
Confidence 46899999999999999875443
No 198
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=29.59 E-value=1e+02 Score=25.76 Aligned_cols=15 Identities=33% Similarity=0.242 Sum_probs=7.8
Q ss_pred CCcEEEEecCCCCCC
Q psy5160 49 NIPIVTFIDVPGFLP 63 (203)
Q Consensus 49 ~lPlv~l~Dt~G~~~ 63 (203)
+-|-|.|.|=|-..+
T Consensus 154 ~~P~vLlADEPTGNL 168 (223)
T COG2884 154 NQPAVLLADEPTGNL 168 (223)
T ss_pred cCCCeEeecCCCCCC
Confidence 445555555555444
No 199
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=29.01 E-value=2.1e+02 Score=21.02 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=31.3
Q ss_pred eCCeEEEEEEeCCCCCcccCHHHHHHHHHHH-HHHHhCCCcEEEEecCCCC
Q psy5160 12 EKFNLIQILKLNPKAPGCIDINAAVKSARFI-RFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 12 i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i-~~a~~~~lPlv~l~Dt~G~ 61 (203)
.+++|+++|=.|.. +=.....++-.++. ++|.+.|+|++-+-.....
T Consensus 66 ~~~~p~~vIEld~~---~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~ 113 (126)
T PF10881_consen 66 RDGRPVAVIELDGS---SHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSY 113 (126)
T ss_pred CCCcEEEEEEecCc---cccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 56889999988853 11222344444555 5889999999999655444
No 200
>PLN02743 nicotinamidase
Probab=28.69 E-value=1.9e+02 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCC
Q psy5160 36 VKSARFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 36 ~K~~r~i~~a~~~~lPlv~l~Dt~ 59 (203)
.++.++++.|.+.++|||++.|+-
T Consensus 61 ~~i~~Ll~~aR~~g~pVI~~~d~h 84 (239)
T PLN02743 61 DESARLAREFCERKWPVLAFLDSH 84 (239)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCcc
Confidence 467899999999999999998763
No 201
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=27.95 E-value=4.3e+02 Score=23.48 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=64.2
Q ss_pred eeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCE
Q psy5160 11 SEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPK 90 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~ 90 (203)
+++|.||.|----++ -.- ++-.+ .....+.-|.++.+=+|..|- .+++.+..+.+...=-
T Consensus 86 sL~G~PVvV~~LHS~--------Lp~-~~a~~-k~~~p~~riaYIMtDggALP~----------~fS~~v~~Lk~~g~l~ 145 (320)
T PF12982_consen 86 SLDGMPVVVAELHSM--------LPP-IAAGL-KALRPDARIAYIMTDGGALPL----------AFSRTVAELKEKGLLD 145 (320)
T ss_pred CCCCCEEEEEechhh--------HHH-HHHHH-HHhCCCCeEEEEEeCCcCccH----------HHHHHHHHHHhCCcee
Confidence 788999877544432 111 11111 223477889999877777542 2466777777666655
Q ss_pred EEEEcCCCchhhhh-------hhhccC-CCcceEEe--cCC-----CeeeeeCHHHHHH
Q psy5160 91 ITVITRKAYGGAYA-------VMSEKN-LRSDVNYA--WPT-----AEIAVMGSKGAVA 134 (203)
Q Consensus 91 isvv~g~~~Gga~~-------~~~~~~-~~~d~~~a--~~~-----a~i~v~gp~~~~~ 134 (203)
-++.+|++|||-+- ..+.+. +.+|+++. =|+ +.+|+.|-+.+..
T Consensus 146 ~tIT~GqAFGGD~EaVni~t~LlaA~~v~~ADv~iV~~GPGivGTGT~~GFSGv~~g~~ 204 (320)
T PF12982_consen 146 ATITCGQAFGGDLEAVNIYTALLAARHVLKADVAIVAMGPGIVGTGTKWGFSGVEQGEI 204 (320)
T ss_pred eeEEeccccCCchhhhhHHHHHHHHHHHhCCCEEEEecCCCccCCCCCCcccHHHHHHH
Confidence 67889999999321 111222 57898665 443 6799999887654
No 202
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.61 E-value=89 Score=22.63 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 36 VKSARFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 36 ~K~~r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
+...++++.|.+.+.|+|.+.+.++-.+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 3455666777777788887777766543
No 203
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=27.55 E-value=1.6e+02 Score=20.58 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEE
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTF 55 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l 55 (203)
...|+|.|.. + +-.-.+.++|+.+++|+++.
T Consensus 26 kLViiA~Da~------~---~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 26 LQVYIAKDAE------E---HVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred eEEEEeCCCC------H---HHHHHHHHHHHhCCCCEEEe
Confidence 4567777742 2 22335668999999999643
No 204
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=27.09 E-value=2.5e+02 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=29.1
Q ss_pred eeeCCeEEEEEEeCCC-CCcccCHHHHHHH-HHHHHHHHhCCCcEEEEecC
Q psy5160 10 SSEKFNLIQILKLNPK-APGCIDINAAVKS-ARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~-~gG~~~~~~~~K~-~r~i~~a~~~~lPlv~l~Dt 58 (203)
+.-+|..+.|+.||.. .-| .+....... .++..++.+.++|+..+.-+
T Consensus 41 l~~~Gy~IvIvTNQ~gi~~~-~~~~~~~~~~~ki~~il~~l~ip~~~~~a~ 90 (159)
T PF08645_consen 41 LHKKGYKIVIVTNQSGIGRG-MGEKDLENFHEKIENILKELGIPIQVYAAP 90 (159)
T ss_dssp HHHTTEEEEEEEE-CCCCCT-BTCCHHHHHHHHHHHHHHHCTS-EEEEECG
T ss_pred HHhcCCeEEEEeCccccccc-cccchHHHHHHHHHHHHHHcCCceEEEecC
Confidence 3456899999999976 222 333444444 34446888899998766643
No 205
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.93 E-value=4e+02 Score=22.69 Aligned_cols=14 Identities=0% Similarity=-0.071 Sum_probs=9.9
Q ss_pred eeCCeEEEEEEeCC
Q psy5160 11 SEKFNLIQILKLNP 24 (203)
Q Consensus 11 ~i~Gr~V~vva~d~ 24 (203)
.-.|+.|+++..|.
T Consensus 97 ~~~g~~V~li~~D~ 110 (272)
T TIGR00064 97 KKQGKSVLLAAGDT 110 (272)
T ss_pred HhcCCEEEEEeCCC
Confidence 34577888888774
No 206
>PRK06683 hypothetical protein; Provisional
Probab=26.78 E-value=1.8e+02 Score=20.25 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
...|+|.|.. +.. .-.+.++|..+++|++++-
T Consensus 29 klViiA~Da~------~~~---~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 29 KEVVIAEDAD------MRL---THVIIRTALQHNIPITKVE 60 (82)
T ss_pred eEEEEECCCC------HHH---HHHHHHHHHhcCCCEEEEC
Confidence 4567777742 222 2245689999999998776
No 207
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.68 E-value=90 Score=26.93 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy5160 38 SARFIRFCDAFNIPIVTFIDVPGFLPG 64 (203)
Q Consensus 38 ~~r~i~~a~~~~lPlv~l~Dt~G~~~g 64 (203)
+..+++...+.|+|+++|.|++.....
T Consensus 29 a~e~l~~L~~~g~~~iflTNn~~~s~~ 55 (269)
T COG0647 29 AAEALKRLKAAGKPVIFLTNNSTRSRE 55 (269)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 345667777899999999999988654
No 208
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=26.60 E-value=45 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.9
Q ss_pred CHHHHHHcCCcceecCCcchHHHHHHH
Q psy5160 156 SPVAAAKKGYIDDIIEPRTTRMRIAQD 182 (203)
Q Consensus 156 ~~~~~~~~G~iD~Vi~p~~tR~~l~~~ 182 (203)
++..+.+.|+||+|-..+++.+.+.+.
T Consensus 124 ~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 124 TAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp EHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred cHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 567899999999999888877766554
No 209
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=25.72 E-value=36 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.6
Q ss_pred ceeeeCCeEEEEEEeCCC---CCcccC
Q psy5160 8 LQSSEKFNLIQILKLNPK---APGCID 31 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~---~gG~~~ 31 (203)
..+.-.|+.|+|+|-||+ .||++=
T Consensus 73 ~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 73 RELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 356778999999999998 677764
No 210
>PRK07714 hypothetical protein; Provisional
Probab=25.39 E-value=1.7e+02 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEE
Q psy5160 15 NLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTF 55 (203)
Q Consensus 15 r~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l 55 (203)
-...|+|+|. +++..+ ++.++|..+++|++.+
T Consensus 35 ~~lViiA~D~------s~~~~~---ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 35 AKLVLLSEDA------SVNTTK---KITDKCTYYNVPMRKV 66 (100)
T ss_pred ceEEEEeCCC------CHHHHH---HHHHHHHhcCCCEEEe
Confidence 3567788884 244334 3456788899998764
No 211
>PRK07283 hypothetical protein; Provisional
Probab=25.26 E-value=1.7e+02 Score=20.88 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=20.1
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
...|+|+|. +++..+|+. +.|..+++|++.+.
T Consensus 36 ~lVi~A~Da------s~~~~kk~~---~~~~~~~Vp~~~~~ 67 (98)
T PRK07283 36 KLVFLANDA------GPNLTKKVT---DKSNYYQVEVSTVF 67 (98)
T ss_pred cEEEEeCCC------CHHHHHHHH---HHHHHcCCCEEEeC
Confidence 456677773 355555544 46777888987554
No 212
>KOG0073|consensus
Probab=25.04 E-value=1.9e+02 Score=23.50 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=45.5
Q ss_pred eeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 11 SEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
.+.|.|+-|+||-....|++..+.-.++..+-+++.....||+.-.-..|-.+
T Consensus 114 rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 35688999999987777999999999999999999899999999887777544
No 213
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=24.94 E-value=2.2e+02 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecC
Q psy5160 34 AAVKSARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 34 ~~~K~~r~i~~a~~~~lPlv~l~Dt 58 (203)
...++.++++.|.+.++|||++.|+
T Consensus 47 ~i~~i~~l~~~aR~~g~pVI~~~~~ 71 (226)
T TIGR03614 47 VIENIKKAVTAARAAGIQVIYFQNG 71 (226)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3456778888899999999999875
No 214
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.73 E-value=1.5e+02 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCCcEEEE
Q psy5160 38 SARFIRFCDAFNIPIVTF 55 (203)
Q Consensus 38 ~~r~i~~a~~~~lPlv~l 55 (203)
..++.++|...++|+++.
T Consensus 58 ~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 58 VAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 345667777777885553
No 215
>PF10758 DUF2586: Protein of unknown function (DUF2586); InterPro: IPR019694 This entry is represented by Bacteriophage HP1, Orf23. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins has currently has no known function but is thought to be a tail sheath protein.
Probab=24.41 E-value=2.6e+02 Score=25.36 Aligned_cols=67 Identities=9% Similarity=-0.005 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhh
Q psy5160 40 RFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMS 107 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~ 107 (203)
...++.++++.|+.|+..++|-. ...+.+.-....+..+-..+++..|..+.-+.|...|-..-.+|
T Consensus 119 ~~~eL~~~~~R~v~fi~~~~~~~-~~~etw~dy~~~l~al~~giaa~~V~vVp~l~gn~~GvlaGRL~ 185 (363)
T PF10758_consen 119 LAAELLNKYGRPVFFILAARGPD-QDGETWSDYAAALVALQKGIAADFVQVVPQLWGNEAGVLAGRLC 185 (363)
T ss_pred HHHHHHHHhCCeEEEEEeccCCC-cCcCCHHHHHHHHHHHHhcccccceEEeccccccchhhHhHHHh
Confidence 34478889999999999999982 11222222222222232233444555555556766665444443
No 216
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=24.27 E-value=24 Score=24.25 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=0.4
Q ss_pred cchHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy5160 173 RTTRMRIAQDLKFLLNKKQDNPYKKHGNIPL 203 (203)
Q Consensus 173 ~~tR~~l~~~L~~l~~~~~~~p~~~~~~~~~ 203 (203)
.++-..|-+.|+.+.+++...-+||+|.+|.
T Consensus 8 keL~~ALqevLeklq~kr~p~~EKK~g~vP~ 38 (73)
T PF06373_consen 8 KELIEALQEVLEKLQSKRIPSWEKKYGQVPS 38 (73)
T ss_dssp ------------------------------B
T ss_pred HHHHHHHHHHHHHHhccCCChhhhhcCcCCC
Confidence 3444456666666666666555799998884
No 217
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=23.97 E-value=4.3e+02 Score=23.65 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=53.5
Q ss_pred cceeeeCCeEEEEEEeCCC---------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHH
Q psy5160 7 GLQSSEKFNLIQILKLNPK---------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGS 77 (203)
Q Consensus 7 ~~~~~i~Gr~V~vva~d~~---------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a 77 (203)
...++|.||++-+-..... =++.++ .+.++.+|.+++ .|++-|.|-+... ....++.+-
T Consensus 242 ~~~l~v~gR~i~v~~~~~~va~F~F~eLC~~plg------~aDYlaLA~~F~--ti~I~~VP~l~~~----~~n~arRFI 309 (362)
T PF03969_consen 242 PRTLEVGGREIPVPRACGGVAWFDFDELCERPLG------AADYLALAERFH--TIFISDVPVLSES----DRNEARRFI 309 (362)
T ss_pred CceeEEeeeEEeeecccCCEEEecHHHhhccCCC------HHHHHHHHHhCC--EEEEcCCCCcccC----ChhHHHHHH
Confidence 4557899999988665433 233344 567788888887 5999999998643 233456777
Q ss_pred HHHHHHHhCCCCEEEE
Q psy5160 78 KLLYAYAESTVPKITV 93 (203)
Q Consensus 78 ~~~~a~~~~~vP~isv 93 (203)
.++..+.+..+..+..
T Consensus 310 ~LID~LYd~~v~L~~s 325 (362)
T PF03969_consen 310 TLIDVLYDRKVKLIIS 325 (362)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 8888888999887753
No 218
>PHA03050 glutaredoxin; Provisional
Probab=23.68 E-value=2.7e+02 Score=20.23 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=39.5
Q ss_pred ceeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCc--EEEEecCCCCCCcHHHHHhHHHHHHHHHHHH-HH
Q psy5160 8 LQSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIP--IVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA-YA 84 (203)
Q Consensus 8 ~~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lP--lv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a-~~ 84 (203)
+|-.++..+|-|++... . .-|.|+-+ +.++.+++ -...+|.--...+ .+ + ...+.. ..
T Consensus 6 v~~~i~~~~V~vys~~~----C---PyC~~ak~---~L~~~~i~~~~~~~i~i~~~~~~--~~---~----~~~l~~~tG 66 (108)
T PHA03050 6 VQQRLANNKVTIFVKFT----C---PFCRNALD---ILNKFSFKRGAYEIVDIKEFKPE--NE---L----RDYFEQITG 66 (108)
T ss_pred HHHHhccCCEEEEECCC----C---hHHHHHHH---HHHHcCCCcCCcEEEECCCCCCC--HH---H----HHHHHHHcC
Confidence 34456777787777762 1 22444444 44567772 2334444311111 11 1 122222 23
Q ss_pred hCCCCEEEEEcCCCchhhh
Q psy5160 85 ESTVPKITVITRKAYGGAY 103 (203)
Q Consensus 85 ~~~vP~isvv~g~~~Gga~ 103 (203)
..+||+| +|-|+.+||.-
T Consensus 67 ~~tVP~I-fI~g~~iGG~d 84 (108)
T PHA03050 67 GRTVPRI-FFGKTSIGGYS 84 (108)
T ss_pred CCCcCEE-EECCEEEeChH
Confidence 5689999 67788888753
No 219
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=23.57 E-value=1.2e+02 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred eeeCCeEEEEEEeCCC------------CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy5160 10 SSEKFNLIQILKLNPK------------APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~------------~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
|-+++.|++.-.-+.- +=|++..+.-+-+....+.|++.++|+|+ |=-|.
T Consensus 28 LA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVL--DPVgv 89 (246)
T PF02110_consen 28 LAIGASPIMAEAPEEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVL--DPVGV 89 (246)
T ss_dssp HHCTSEEEE--STTTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEE--E-TTB
T ss_pred HHcCCCccccCCHHHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEE--eCccc
Confidence 4566777765544321 45899999889999999999999999986 54444
No 220
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=23.45 E-value=1.1e+02 Score=26.40 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy5160 26 APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
+=|+++.+..+-+..+++.|++.++|+|+ |=-|.
T Consensus 62 NIGTL~~~~~~~m~~A~~~An~~~~PvvL--DPVgv 95 (265)
T COG2145 62 NIGTLSAERIQAMRAAIKAANESGKPVVL--DPVGV 95 (265)
T ss_pred eeccCChHHHHHHHHHHHHHHhcCCCEEe--cCccC
Confidence 45999999999999999999999999986 54443
No 221
>PRK11440 putative hydrolase; Provisional
Probab=23.23 E-value=1.3e+02 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecC
Q psy5160 33 NAAVKSARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 33 ~~~~K~~r~i~~a~~~~lPlv~l~Dt 58 (203)
.-..++.++++.|.+.++|||+..+.
T Consensus 32 ~~i~~i~~l~~~ar~~g~pVi~~~~~ 57 (188)
T PRK11440 32 EVVARAARLAAKFRASGSPVVLVRVG 57 (188)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 44577788889999999999999865
No 222
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.09 E-value=2e+02 Score=19.85 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=41.7
Q ss_pred eeeeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHH-HHhCC
Q psy5160 9 QSSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA-YAEST 87 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a-~~~~~ 87 (203)
+-.|+..+|.|++.... +..+-.-+. ++.++.++.++|.-.+ |.-. ..+ + ...+.. ....+
T Consensus 2 ~~~i~~~~vvvf~k~~~--~~~~Cp~C~---~ak~~L~~~~i~y~~i-dv~~-----~~~---~----~~~l~~~~g~~t 63 (90)
T cd03028 2 KKLIKENPVVLFMKGTP--EEPRCGFSR---KVVQILNQLGVDFGTF-DILE-----DEE---V----RQGLKEYSNWPT 63 (90)
T ss_pred hhhhccCCEEEEEcCCC--CCCCCcHHH---HHHHHHHHcCCCeEEE-EcCC-----CHH---H----HHHHHHHhCCCC
Confidence 34567788888865311 112222333 4445556788886555 4321 111 1 122222 23568
Q ss_pred CCEEEEEcCCCchhhhhh
Q psy5160 88 VPKITVITRKAYGGAYAV 105 (203)
Q Consensus 88 vP~isvv~g~~~Gga~~~ 105 (203)
+|+| .+-|..+||.--.
T Consensus 64 vP~v-fi~g~~iGG~~~l 80 (90)
T cd03028 64 FPQL-YVNGELVGGCDIV 80 (90)
T ss_pred CCEE-EECCEEEeCHHHH
Confidence 9999 6778888875443
No 223
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=23.02 E-value=1.7e+02 Score=27.74 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=42.0
Q ss_pred eCCeEEEEEEeCCC-CCcccCHHHHHHHH--HHHHHHHhCCCcEEEEecCCCC
Q psy5160 12 EKFNLIQILKLNPK-APGCIDINAAVKSA--RFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 12 i~Gr~V~vva~d~~-~gG~~~~~~~~K~~--r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
.+.+.|.+--+|+. .+|.+...-+.|.+ ++.++|+++++||-.|+=.+|.
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgs 254 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSL 254 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCC
Confidence 67789999999999 89999888887766 6679999999999888865543
No 224
>PRK07482 hypothetical protein; Provisional
Probab=22.96 E-value=2.5e+02 Score=25.77 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=43.8
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCEE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPKI 91 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~i 91 (203)
..|+.|--+|- .||.+-+. ..-..++-++|+++++.+|+=-=-+|| |.| +++..-.....|-|
T Consensus 219 ~~iAAvi~EPvqg~gG~~~~~-~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG-------------~~~a~~~~gv~PDi 284 (461)
T PRK07482 219 DTIAAFIAEPVLGTGGIVPPP-AGYWPAIQAVLKKYDILLIADEVVTGFGRLG-------------SMFGSDHYGIEPDL 284 (461)
T ss_pred CcEEEEEECCccCCCCCcCCC-HHHHHHHHHHHHHhCCEEEEeccccCCCcCc-------------chhhHHhcCCCCCE
Confidence 34555556655 56655322 223334558999999988653323566 543 22222224567998
Q ss_pred EEEcCCCchhhh
Q psy5160 92 TVITRKAYGGAY 103 (203)
Q Consensus 92 svv~g~~~Gga~ 103 (203)
. ++||+.||++
T Consensus 285 v-~~gKgl~gG~ 295 (461)
T PRK07482 285 I-TVAKGLTSAY 295 (461)
T ss_pred E-EEccccccCc
Confidence 4 6799998875
No 225
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=22.95 E-value=84 Score=28.66 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=43.2
Q ss_pred CeEEEEEEeCC--C-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC-CCCCCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 14 FNLIQILKLNP--K-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDV-PGFLPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 14 Gr~V~vva~d~--~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt-~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
+..++.+--+| . .||.+-+. ..-+.++.++|+++++.+|+ =|. .|+ | ..++++..-.....|
T Consensus 204 ~~~iAAvi~EPi~qg~gG~~~~~-~~yl~~l~~lc~~~g~llI~-DEv~tG~--G----------rtG~~~a~~~~gv~P 269 (429)
T PRK06173 204 GDEIAALILEPVVQGAGGMYFYS-PTYLVKARELCDQYGVLLIF-DEIATGF--G----------RTGKLFALEHAGVVP 269 (429)
T ss_pred CCcEEEEEEcchhhccCCcccCC-HHHHHHHHHHHHHcCCeEEe-cchhcCC--C----------cCCcchHHHhcCCCC
Confidence 34455555565 3 55654222 24555677899999997752 222 343 1 112333222234578
Q ss_pred EEEEEcCCCchhhhhh
Q psy5160 90 KITVITRKAYGGAYAV 105 (203)
Q Consensus 90 ~isvv~g~~~Gga~~~ 105 (203)
-|. ++||+.||+++.
T Consensus 270 Div-~~gK~l~gG~~p 284 (429)
T PRK06173 270 DIM-CIGKALTGGYLT 284 (429)
T ss_pred CEE-EeehhhhCCccc
Confidence 886 489999887653
No 226
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=22.92 E-value=2.1e+02 Score=25.31 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy5160 13 KFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPG 64 (203)
Q Consensus 13 ~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g 64 (203)
.+++|..+.-| |++.... +...+.+|...++|+|+++..-+...+
T Consensus 143 ~~~~vv~~~GD----Ga~~~g~---~~EaL~tA~~~~LPvi~Vv~NN~~~~~ 187 (341)
T TIGR03181 143 EDNVAVTYFGD----GGTSEGD---FYEALNFAGVFKAPVVFFVQNNQWAIS 187 (341)
T ss_pred CCCEEEEEecC----CccccCh---HHHHHHHHhccCCCEEEEEECCCCccc
Confidence 45666666666 3342111 123456677788999888887776543
No 227
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.58 E-value=2.7e+02 Score=21.86 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=38.9
Q ss_pred cEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEEEEcCCCchhhhhhhhccCCCcceEEecCCCeeeeeCHH
Q psy5160 51 PIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 51 Plv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvv~g~~~Gga~~~~~~~~~~~d~~~a~~~a~i~v~gp~ 130 (203)
-.+.+.|-.|-.+. .| .+|+.+......+...++.++|+++|-.-..-. .+|..++...-++ |-
T Consensus 68 ~~~i~Ld~~Gk~~s--S~------~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~----~a~~~lSLS~mTf----pH 131 (155)
T PF02590_consen 68 DYVILLDERGKQLS--SE------EFAKKLERWMNQGKSDIVFIIGGADGLSEEVRK----RADEKLSLSKMTF----PH 131 (155)
T ss_dssp SEEEEE-TTSEE----HH------HHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHH----H-SEEEES-SS-------H
T ss_pred CEEEEEcCCCccCC--hH------HHHHHHHHHHhcCCceEEEEEecCCCCCHHHHh----hcCceEEEecCCC----cH
Confidence 34567787776543 11 246777777778888999999999996444433 5788888776432 44
Q ss_pred HHHHHH
Q psy5160 131 GAVAIL 136 (203)
Q Consensus 131 ~~~~i~ 136 (203)
..++++
T Consensus 132 ~larlv 137 (155)
T PF02590_consen 132 QLARLV 137 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455544
No 228
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.49 E-value=3.9e+02 Score=24.80 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.3
Q ss_pred EEEecCCCCCCc
Q psy5160 53 VTFIDVPGFLPG 64 (203)
Q Consensus 53 v~l~Dt~G~~~g 64 (203)
+.|+||+|....
T Consensus 302 ~VLIDTaGr~~r 313 (432)
T PRK12724 302 LILIDTAGYSHR 313 (432)
T ss_pred EEEEeCCCCCcc
Confidence 378999998653
No 229
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.45 E-value=2.4e+02 Score=24.93 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy5160 35 AVKSARFIRFCDAFNIPIVTFIDVPGFLPG 64 (203)
Q Consensus 35 ~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g 64 (203)
-++..++.+.+.+.+...|.+.||.|.+..
T Consensus 142 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 142 PEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 356777777788899999999999999754
No 230
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=22.43 E-value=1.2e+02 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=23.9
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 15 NLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 15 r~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
-...|+|+|-. + ..+..++-.+|.++++|++++-
T Consensus 149 AkLVIIA~DVs------P--ie~vk~LpaLCrk~~VPY~iVk 182 (263)
T PTZ00222 149 ARMVVIANNVD------P--VELVLWMPNLCRANKIPYAIVK 182 (263)
T ss_pred ceEEEEeCCCC------H--HHHHHHHHHHHHhcCCCEEEEC
Confidence 45677888842 2 3344567789999999998765
No 231
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.40 E-value=52 Score=28.45 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=11.4
Q ss_pred eCCeEEEEEEeCCC---CCcccC
Q psy5160 12 EKFNLIQILKLNPK---APGCID 31 (203)
Q Consensus 12 i~Gr~V~vva~d~~---~gG~~~ 31 (203)
-.|+.|+|+|-||+ .||++=
T Consensus 55 ~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 55 ERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HTT--EEEEEE-GGGGCC---SS
T ss_pred hcCCceEEEEECCCCCCCCCccc
Confidence 37999999999998 676663
No 232
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=22.35 E-value=1.1e+02 Score=25.01 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 26 APGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 26 ~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
.||..++....+..++++.|.+.++|++.++
T Consensus 53 sGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC 83 (214)
T PRK07765 53 SPGPGTPERAGASIDMVRACAAAGTPLLGVC 83 (214)
T ss_pred CCCCCChhhcchHHHHHHHHHhCCCCEEEEc
Confidence 4666666655555677777777788888776
No 233
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=22.27 E-value=94 Score=27.27 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=30.6
Q ss_pred eeeeCCeEEEEEEeCCC-----------------------------------CCcccCHHHHHHHHHHHHHHHhCCCcEE
Q psy5160 9 QSSEKFNLIQILKLNPK-----------------------------------APGCIDINAAVKSARFIRFCDAFNIPIV 53 (203)
Q Consensus 9 ~~~i~Gr~V~vva~d~~-----------------------------------~gG~~~~~~~~K~~r~i~~a~~~~lPlv 53 (203)
|+.+||+|+-+++-... .-|..+-.+.+.+.+|+++|.+.++-||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 57788888888887531 1467777777889999999999999965
No 234
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=21.92 E-value=2.2e+02 Score=25.20 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=28.5
Q ss_pred CeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy5160 14 FNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPG 64 (203)
Q Consensus 14 Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g 64 (203)
++.|.++.-| |++.... .-..+.+|...++|+|+++..-|..++
T Consensus 157 ~~vvv~~~GD----Ga~~~G~---~~Ealn~A~~~~LPvifvv~NN~~~i~ 200 (341)
T CHL00149 157 LRVTACFFGD----GTTNNGQ---FFECLNMAVLWKLPIIFVVENNQWAIG 200 (341)
T ss_pred CCEEEEEeCC----chhhhcH---HHHHHHHHhhcCCCEEEEEEeCCeeee
Confidence 5666666667 3343111 122357788889999999999886554
No 235
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=21.91 E-value=1.4e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHH-HHhCCCCEEEEEcCC
Q psy5160 40 RFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYA-YAESTVPKITVITRK 97 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a-~~~~~vP~isvv~g~ 97 (203)
..+.+|.-.++|+||+++.-++.++...+... .+..+.. -....+|-+.| -|.
T Consensus 178 EalN~A~v~klPvvf~ieNN~yAiSvp~~~q~----~~~~~~~ra~aygipgv~V-DG~ 231 (358)
T COG1071 178 EALNFAAVWKLPVVFVIENNQYAISVPRSRQT----AAEIIAARAAAYGIPGVRV-DGN 231 (358)
T ss_pred HHHHHHHHhcCCEEEEEecCCceeecchhhcc----cchhHHhhhhccCCCeEEE-CCc
Confidence 55689999999999999999998873333111 1233331 23457787765 554
No 236
>PRK05965 hypothetical protein; Provisional
Probab=21.83 E-value=2.3e+02 Score=26.10 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=42.5
Q ss_pred EEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCEEE
Q psy5160 16 LIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPKIT 92 (203)
Q Consensus 16 ~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~is 92 (203)
.|+.+--+|- .||.+-+. ..-..++-++|+++++.+|+=-=-.|| |.| +++..-.....|-|
T Consensus 215 ~iAAvIvEPiqg~gG~~~p~-~~yl~~lr~lc~~~gillI~DEV~tGfGRtG-------------~~~a~~~~gv~PDi- 279 (459)
T PRK05965 215 NVAAFFCEPIQGSGGVIVPP-KGWLKAMREACRELGILFVADEVITGFGRTG-------------PLFACEAEGVVPDL- 279 (459)
T ss_pred ceEEEEEeccccCCCCccCC-HHHHHHHHHHHHHcCCEEEEechhccCccCc-------------hhhhHhhcCCCCCe-
Confidence 4444444444 55654322 233344558999999988763323555 433 22222223567988
Q ss_pred EEcCCCchhhhh
Q psy5160 93 VITRKAYGGAYA 104 (203)
Q Consensus 93 vv~g~~~Gga~~ 104 (203)
+++||+.||++.
T Consensus 280 v~~gKgl~gG~~ 291 (459)
T PRK05965 280 MTVAKGLTSGYV 291 (459)
T ss_pred EEechhhccCCc
Confidence 477999888753
No 237
>KOG0780|consensus
Probab=21.81 E-value=4.9e+02 Score=24.24 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=28.6
Q ss_pred eeeCCeEEEEEEeCCCCCc------------------ccCHH-HHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy5160 10 SSEKFNLIQILKLNPKAPG------------------CIDIN-AAVKSARFIRFCDAFNIPIVTFIDVPGF 61 (203)
Q Consensus 10 ~~i~Gr~V~vva~d~~~gG------------------~~~~~-~~~K~~r~i~~a~~~~lPlv~l~Dt~G~ 61 (203)
++-.|..++++|-|.-.+| +-... -+.-+..-++.+.++|.-| .++||+|=
T Consensus 125 ~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdv-IIvDTSGR 194 (483)
T KOG0780|consen 125 YKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDV-IIVDTSGR 194 (483)
T ss_pred HHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcE-EEEeCCCc
Confidence 3457888888888732222 22222 2222334455565666654 47899994
No 238
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.79 E-value=1.5e+02 Score=25.53 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=12.8
Q ss_pred cceEEecCCCeeeeeCHH
Q psy5160 113 SDVNYAWPTAEIAVMGSK 130 (203)
Q Consensus 113 ~d~~~a~~~a~i~v~gp~ 130 (203)
+|.+++..+.++-+=||.
T Consensus 215 ~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 215 ADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred HhhheEecCCcEEEeCCh
Confidence 566777777777777775
No 239
>PRK07481 hypothetical protein; Provisional
Probab=21.61 E-value=2.5e+02 Score=25.69 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=42.9
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCEE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPKI 91 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~i 91 (203)
..|+.|--+|- .||.+-+. ..-..++-++|+++++.+|+=-=..|| |.| +++......-.|-|
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~-~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG-------------~~~a~~~~gv~PDi 277 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPP-ANFWPLVREVCDRHGILLIADEVVTGFGRTG-------------SWFGSRGWGVKPDI 277 (449)
T ss_pred CcEEEEEEecccCCcCCccCC-HHHHHHHHHHHHHcCCEEEEeehhhCcCcCc-------------hhhHhhhcCCCCCE
Confidence 44555556655 56654322 223445568999999988653222555 332 22222223557988
Q ss_pred EEEcCCCchhhh
Q psy5160 92 TVITRKAYGGAY 103 (203)
Q Consensus 92 svv~g~~~Gga~ 103 (203)
+++||+.||++
T Consensus 278 -v~~gKgl~gG~ 288 (449)
T PRK07481 278 -MCLAKGITSGY 288 (449)
T ss_pred -EEEeecccCCC
Confidence 57799988775
No 240
>PRK12403 putative aminotransferase; Provisional
Probab=21.59 E-value=2.8e+02 Score=25.48 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=43.1
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC-CCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDV-PGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPK 90 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt-~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~ 90 (203)
..++.|-.+|- .+|.+-+.. .-..++.++|+++++.+|+ =+. +|+ |.| +++..-...-.|-
T Consensus 221 ~~iaavI~Epv~g~gG~~~~~~-~yl~~lr~lc~~~g~lLI~-DEV~tGfGRtG-------------~~~a~e~~gv~PD 285 (460)
T PRK12403 221 ENVAGFVAEPFQGAGGMIFPPE-SYWPEIQRICRQYDVLLCA-DEVIGGFGRTG-------------EWFAHEHFGFEPD 285 (460)
T ss_pred CceEEEEEccccCCCCCccCCH-HHHHHHHHHHHHcCCEEEE-eccccCCCcCc-------------hhhhhhhcCCCCC
Confidence 34555556665 666554322 3345667899999998873 232 455 432 2222112234587
Q ss_pred EEEEcCCCchhhhh
Q psy5160 91 ITVITRKAYGGAYA 104 (203)
Q Consensus 91 isvv~g~~~Gga~~ 104 (203)
|. ++||+.||+++
T Consensus 286 iv-~~gK~lggG~~ 298 (460)
T PRK12403 286 TL-SIAKGLTSGYV 298 (460)
T ss_pred eE-EEccccccccc
Confidence 75 58999988753
No 241
>PRK07678 aminotransferase; Validated
Probab=21.55 E-value=2.9e+02 Score=25.32 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCEE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPKI 91 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~i 91 (203)
..|+.|--+|- .||.+-+. ..-+.++-++|+++++.+|+=-=-+|| |.| +++........|-|
T Consensus 212 ~~iAAvi~EPiqg~gG~~~~~-~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG-------------~~~~~~~~gv~PDi 277 (451)
T PRK07678 212 ETIAAVIMEPIITGGGVLMPP-QDYMKAVKEICQKHGALLISDEVICGFGRTG-------------KAFGFMNYGVKPDI 277 (451)
T ss_pred CceEEEEEccccCCCCcccCC-HHHHHHHHHHHHHcCCEEEEeehhhcCCcCc-------------hhHHHHhcCCCCCE
Confidence 34555555554 55554322 233445568999999988642112455 322 22222223567998
Q ss_pred EEEcCCCchhhh
Q psy5160 92 TVITRKAYGGAY 103 (203)
Q Consensus 92 svv~g~~~Gga~ 103 (203)
. ++||+.||++
T Consensus 278 v-t~gK~lggG~ 288 (451)
T PRK07678 278 I-TMAKGITSAY 288 (451)
T ss_pred E-EeecccccCC
Confidence 5 6699998875
No 242
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.48 E-value=1.3e+02 Score=24.57 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 36 VKSARFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 36 ~K~~r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
.++.++++.+.+.+.-.|.|.||.|...
T Consensus 137 ~~~~~~~~~~~~~g~~~i~l~Dt~G~~~ 164 (237)
T PF00682_consen 137 EELLELAEALAEAGADIIYLADTVGIMT 164 (237)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEETTS-S-
T ss_pred HHHHHHHHHHHHcCCeEEEeeCccCCcC
Confidence 5666777777788999999999999974
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=21.48 E-value=44 Score=30.98 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=24.2
Q ss_pred eeCCeEEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcH
Q psy5160 11 SEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGL 65 (203)
Q Consensus 11 ~i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~ 65 (203)
-+-|+.++|+.+.+. . .. .|...-|.=.+.+ +.|+||+|+..+.
T Consensus 22 RL~g~r~AIV~D~pG---v-TR------Dr~y~~~~~~~~~-f~lIDTgGl~~~~ 65 (444)
T COG1160 22 RLTGRRIAIVSDTPG---V-TR------DRIYGDAEWLGRE-FILIDTGGLDDGD 65 (444)
T ss_pred HHhCCeeeEeecCCC---C-cc------CCccceeEEcCce-EEEEECCCCCcCC
Confidence 345778888888774 1 00 1222333335555 6666777766543
No 244
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=21.45 E-value=1.9e+02 Score=25.66 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=27.2
Q ss_pred eCCeEEEEEEeCCCCCcccCHHHHHHHHHHH-HHHHhCCCcEEE
Q psy5160 12 EKFNLIQILKLNPKAPGCIDINAAVKSARFI-RFCDAFNIPIVT 54 (203)
Q Consensus 12 i~Gr~V~vva~d~~~gG~~~~~~~~K~~r~i-~~a~~~~lPlv~ 54 (203)
.+|+|++.+=-=. +-+++.|+.+.+=+ +-+.+||+|||.
T Consensus 90 mGG~Pv~~vd~is----a~s~d~~~ei~eglr~~a~kfgvpivG 129 (324)
T COG2144 90 MGGEPVGAVDAIS----AKSEDQAREILEGLRKGARKFGVPIVG 129 (324)
T ss_pred hCCcceEEEEeee----cCCHHHHHHHHHHHHHHHHhcCCceec
Confidence 4567766553332 35678888887777 478899999874
No 245
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=21.44 E-value=1.7e+02 Score=22.32 Aligned_cols=29 Identities=7% Similarity=0.199 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy5160 31 DINAAVKSARFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 31 ~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~ 59 (203)
......++.++++.|.+.++|+|+....+
T Consensus 18 ~~~~~~~i~~l~~~ar~~g~pVi~~~~~~ 46 (157)
T cd01012 18 FDELINNTVKLAKAAKLLDVPVILTEQYP 46 (157)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 45566788899999999999999997665
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=21.36 E-value=2.8e+02 Score=19.50 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=7.3
Q ss_pred EEecCCCCCCc
Q psy5160 54 TFIDVPGFLPG 64 (203)
Q Consensus 54 ~l~Dt~G~~~g 64 (203)
.|+||||+.-+
T Consensus 50 ~~vDtpG~~~~ 60 (116)
T PF01926_consen 50 ILVDTPGINDG 60 (116)
T ss_dssp EEEESSSCSSS
T ss_pred EEEeCCCCccc
Confidence 47777777544
No 247
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=21.28 E-value=2.4e+02 Score=22.86 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHHhCCCCEEE
Q psy5160 16 LIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKIT 92 (203)
Q Consensus 16 ~V~vva~d~~~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~is 92 (203)
.|++++.+-+ -....+.......++|++++.|+|+--.- .++......+.+-+++. .+.+.+|-|+
T Consensus 98 KVCfl~t~a~----~~~~~sv~~~~V~kla~~y~~plL~~~le------~~~~~~~lAqRLL~~lq-i~aG~vpgvs 163 (176)
T PF11111_consen 98 KVCFLATNAG----RESHCSVHPNEVRKLAATYNSPLLFADLE------NEEGRTSLAQRLLRMLQ-ICAGHVPGVS 163 (176)
T ss_pred ceEEEEcCCC----cccccccCHHHHHHHHHHhCCCEEEeecc------cchHHHHHHHHHHHHHH-HHcCCCCCcc
Confidence 3555665533 11112233445567888999999985432 22344444444445543 3567777665
No 248
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.22 E-value=2.9e+02 Score=19.66 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=8.5
Q ss_pred HHHHHHHhCCCcEEEEecCC
Q psy5160 40 RFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~ 59 (203)
+.++.+.+.+.|+|.+.+.+
T Consensus 71 ~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 71 ELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp HHHHHHHHTTSEEEEEESST
T ss_pred hhhHHHHhcCCeEEEEeCCC
Confidence 33334444444444444443
No 249
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=21.09 E-value=2.6e+02 Score=18.44 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=20.7
Q ss_pred hCCCcEEEEecCCCCCCcHHHHHhHHHHHHHHHHHHHH-h-CCCCEEEEE
Q psy5160 47 AFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYA-E-STVPKITVI 94 (203)
Q Consensus 47 ~~~lPlv~l~Dt~G~~~g~~~E~~g~~~~~a~~~~a~~-~-~~vP~isvv 94 (203)
..+-.|+|++|-+|.-.-.-+++. +++..+. . ...|.+.|+
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~-------~L~~~ik~~F~~~P~i~V~ 54 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQL-------SLFKEIKPLFPNKPVIVVL 54 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHH-------HHHHHHHHHTTTS-EEEEE
T ss_pred hhcceEEEEEcCCCCCCCCHHHHH-------HHHHHHHHHcCCCCEEEEE
Confidence 356779999998876432223333 3444433 2 278988765
No 250
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=20.84 E-value=2.6e+02 Score=26.16 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=43.2
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC-CCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCCE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDV-PGF-LPGLAQEHLGIIRHGSKLLYAYAESTVPK 90 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt-~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP~ 90 (203)
..++.|-.+|- .||.+-+. ..-+.++.++|+++++.+|+ =++ +|| |.|. ++..-.....|-
T Consensus 259 ~~iAAvI~EPv~g~gG~~~p~-~~yl~~lr~lc~~~g~lLI~-DEV~TGfGRtG~-------------~~a~e~~gv~PD 323 (504)
T PLN02760 259 ETIAAFIAEPVMGAGGVIPPP-ATYFEKIQAVLKKYDILFIA-DEVICAFGRLGT-------------MFGCDKYNIKPD 323 (504)
T ss_pred CceEEEEECCccCCCCCcCCC-HHHHHHHHHHHHHcCCEEEe-cchhhCCcccch-------------hhHHHhcCCCCc
Confidence 34555556665 66655332 33344566899999998874 222 366 5441 221112344698
Q ss_pred EEEEcCCCchhhh
Q psy5160 91 ITVITRKAYGGAY 103 (203)
Q Consensus 91 isvv~g~~~Gga~ 103 (203)
| +++||+.||++
T Consensus 324 i-vtlgK~lggG~ 335 (504)
T PLN02760 324 L-VSLAKALSSAY 335 (504)
T ss_pred E-EEecccccCCc
Confidence 7 68899998765
No 251
>PRK07036 hypothetical protein; Provisional
Probab=20.77 E-value=2.8e+02 Score=25.60 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=42.1
Q ss_pred eEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCcHHHHHhHHHHHHHHHHHHH-HhCCCCE
Q psy5160 15 NLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGF-LPGLAQEHLGIIRHGSKLLYAY-AESTVPK 90 (203)
Q Consensus 15 r~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~-~~g~~~E~~g~~~~~a~~~~a~-~~~~vP~ 90 (203)
..++.|--+|- .||.+-+. ..-..++.++|+++++++|+=-=-+|| |.| +++... .....|-
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~-~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-------------~~~~~~~~~gv~PD 284 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPP-PGYHARMREICRRYDILYISDEVVTGFGRLG-------------HFFASEAVFGIQPD 284 (466)
T ss_pred CceEEEEEeCCcCCCCCccCC-HHHHHHHHHHHHHcCCEEEEeechhCCCcCc-------------hhhhhhhhcCCCCC
Confidence 44555555555 55654332 223445568999999988632212466 543 222221 1245788
Q ss_pred EEEEcCCCchhhh
Q psy5160 91 ITVITRKAYGGAY 103 (203)
Q Consensus 91 isvv~g~~~Gga~ 103 (203)
| +++||+.||++
T Consensus 285 i-vt~gK~l~gG~ 296 (466)
T PRK07036 285 I-ITFAKGLTSGY 296 (466)
T ss_pred E-EEEccccccCc
Confidence 8 47799988775
No 252
>PRK06186 hypothetical protein; Validated
Probab=20.75 E-value=91 Score=26.28 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.8
Q ss_pred CcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy5160 27 PGCIDINAAVKSARFIRFCDAFNIPIVTFI 56 (203)
Q Consensus 27 gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~ 56 (203)
|| .|..+-+=...+++.|.+.++|++.++
T Consensus 61 gG-fg~rg~~Gki~ai~~Are~~iP~LGIC 89 (229)
T PRK06186 61 PG-SPYRNDDGALTAIRFARENGIPFLGTC 89 (229)
T ss_pred CC-CCcccHhHHHHHHHHHHHcCCCeEeec
Confidence 45 566667667788999999999999887
No 253
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=20.67 E-value=2.1e+02 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCCCcH-HHHHhHHHHHHHHHHHHHHh
Q psy5160 49 NIPIVTFIDVPGFLPGL-AQEHLGIIRHGSKLLYAYAE 85 (203)
Q Consensus 49 ~lPlv~l~Dt~G~~~g~-~~E~~g~~~~~a~~~~a~~~ 85 (203)
+.|=++|+|+||+.-.. ..+...+...+-+++..+.+
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~ 160 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS 160 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh
Confidence 35889999999995211 11112233445555555544
No 254
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=20.65 E-value=1.2e+02 Score=25.27 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHH-HHHHHHHHHHHhCCCcEEEEecCC
Q psy5160 32 INAA-VKSARFIRFCDAFNIPIVTFIDVP 59 (203)
Q Consensus 32 ~~~~-~K~~r~i~~a~~~~lPlv~l~Dt~ 59 (203)
.+.+ +-...+.+++.++.+|++.+.|+.
T Consensus 127 ~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 127 PQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 3444 444456689999999999999973
No 255
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.63 E-value=5.1e+02 Score=21.66 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCCc
Q psy5160 36 VKSARFIRFCDAFNIPIVTFIDVPGFLPG 64 (203)
Q Consensus 36 ~K~~r~i~~a~~~~lPlv~l~Dt~G~~~g 64 (203)
....++++.+.+.+...|.|.||.|....
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P 169 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGAMLP 169 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCcCH
Confidence 45666677777889999999999998643
No 256
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.40 E-value=1.4e+02 Score=23.28 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy5160 35 AVKSARFIRFCDAFNIPIVTFIDVPGFL 62 (203)
Q Consensus 35 ~~K~~r~i~~a~~~~lPlv~l~Dt~G~~ 62 (203)
.....++++.|.+.|.|+|.+.|.++-.
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 3455677788888889999998887764
No 257
>PRK14974 cell division protein FtsY; Provisional
Probab=20.36 E-value=6.1e+02 Score=22.48 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 40 RFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 40 r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
..++.+...+.- +.|+||+|-..
T Consensus 213 ~ai~~~~~~~~D-vVLIDTaGr~~ 235 (336)
T PRK14974 213 DAIEHAKARGID-VVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHhCCCC-EEEEECCCccC
Confidence 344455445544 78889998754
No 258
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.30 E-value=3.8e+02 Score=23.17 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 30 IDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 30 ~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
-..+..+++++..+.|+++++|+|..+=--|..+
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcc
Confidence 3456668889999999999999998775555554
No 259
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.28 E-value=1.1e+02 Score=21.40 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhCCCcEEE
Q psy5160 36 VKSARFIRFCDAFNIPIVT 54 (203)
Q Consensus 36 ~K~~r~i~~a~~~~lPlv~ 54 (203)
.-+.+.+++|.++++|++-
T Consensus 27 ~~A~~I~~~A~e~~VPi~~ 45 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVE 45 (82)
T ss_pred HHHHHHHHHHHHcCCCEEe
Confidence 4456777899999999974
No 260
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=20.23 E-value=1e+02 Score=25.62 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=23.4
Q ss_pred eEEEEEEeCCC-CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy5160 15 NLIQILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDV 58 (203)
Q Consensus 15 r~V~vva~d~~-~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt 58 (203)
.|++|++-=-. -|++.. .-.++++|.++++|+|.+-|-
T Consensus 156 ~Pa~VicEi~~~dG~mar------~~~~~~fa~~h~l~~iti~dl 194 (203)
T COG0108 156 KPAGVICEIMNDDGTMAR------LPELEEFAKEHGLPVITIEDL 194 (203)
T ss_pred CCcEEEEEEeCCCccccC------hHHHHHHHHHcCCcEEEHHHH
Confidence 46777775221 223222 345677888999999887664
No 261
>PRK06852 aldolase; Validated
Probab=20.18 E-value=2.9e+02 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy5160 32 INAAVKSARFIRFCDAFNIPIVTFIDVPGFLP 63 (203)
Q Consensus 32 ~~~~~K~~r~i~~a~~~~lPlv~l~Dt~G~~~ 63 (203)
.+..+.+.+..+-|+++|+|+|..+=.-|-.+
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 44556788888999999999987665555544
No 262
>PRK06541 hypothetical protein; Provisional
Probab=20.09 E-value=3e+02 Score=25.27 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=43.2
Q ss_pred CeEEEEEEeCCC--CCcccCHHHHHHHHHHHHHHHhCCCcEEEEecC-CCC-CCcHHHHHhHHHHHHHHHHHHHHhCCCC
Q psy5160 14 FNLIQILKLNPK--APGCIDINAAVKSARFIRFCDAFNIPIVTFIDV-PGF-LPGLAQEHLGIIRHGSKLLYAYAESTVP 89 (203)
Q Consensus 14 Gr~V~vva~d~~--~gG~~~~~~~~K~~r~i~~a~~~~lPlv~l~Dt-~G~-~~g~~~E~~g~~~~~a~~~~a~~~~~vP 89 (203)
...++.+-.+|- .+|.+-+ ...-..++.++|+++++.+|+= +. .|| +.| +++........|
T Consensus 219 ~~~~Aavi~EPv~g~~G~~~~-~~~yl~~l~~lc~~~g~llI~D-EV~tGfGR~G-------------~~~a~~~~gv~P 283 (460)
T PRK06541 219 PDTVAAVFLEPVQNAGGCFPP-PPGYFERVREICDRYDVLLVSD-EVICAFGRLG-------------EMFGCERFGYVP 283 (460)
T ss_pred CCCEEEEEECCccCCCCCccC-CHHHHHHHHHHHHHcCCEEEEe-chhhCCCcCc-------------hhhhhhhcCCCC
Confidence 345666667775 5665533 1223445678999999988632 23 355 433 222111223468
Q ss_pred EEEEEcCCCchhhh
Q psy5160 90 KITVITRKAYGGAY 103 (203)
Q Consensus 90 ~isvv~g~~~Gga~ 103 (203)
-|. ++||++|+++
T Consensus 284 Div-t~gK~l~~G~ 296 (460)
T PRK06541 284 DII-TCAKGITSGY 296 (460)
T ss_pred CEE-EecccccCCc
Confidence 874 6899998765
Done!