RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5160
(203 letters)
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 259 bits (664), Expect = 1e-84
Identities = 109/189 (57%), Positives = 133/189 (70%), Gaps = 13/189 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G +DI++A K+ARFIR CDAFNIP+V +D PGF+PG QE+ GII+HG+KLLYA AE+T
Sbjct: 338 GVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEAT 397
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN-- 145
VPKITVITRKAYGGAY VM K L D NYAWPTAEIAVMG +GAV+ILYRKE +
Sbjct: 398 VPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERP 457
Query: 146 ----------YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQ-DNP 194
EY ++F +P AA++GYID +I+P TR + + L L NK + P
Sbjct: 458 EEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKPVVETP 517
Query: 195 YKKHGNIPL 203
KKHGNIPL
Sbjct: 518 LKKHGNIPL 526
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane
[Energy metabolism, ATP-proton motive force
interconversion, Energy metabolism, Fermentation,
Transport and binding proteins, Cations and iron
carrying compounds].
Length = 512
Score = 257 bits (657), Expect = 6e-84
Identities = 112/194 (57%), Positives = 144/194 (74%), Gaps = 9/194 (4%)
Query: 19 ILKLNPKA-PGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGS 77
I+ PK GC+DI+++ K ARFIRFCDAFNIPIVTF+DVPGFLPG+ QE+ GIIRHG+
Sbjct: 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGA 378
Query: 78 KLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILY 137
K+LYAY+E+TVPK+T+ITRKAYGGAY M K+L +D YAWPTAEIAVMG GA I++
Sbjct: 379 KVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANIIF 438
Query: 138 RKE-KDKSNYEV-------EYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNK 189
RK+ K+ + EY ++F +P AA +GY+DD+IEP+ TR +I L L +K
Sbjct: 439 RKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLESK 498
Query: 190 KQDNPYKKHGNIPL 203
++ P KKHGNIPL
Sbjct: 499 REKLPPKKHGNIPL 512
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain. All of the
members in this family are biotin dependent
carboxylases. The carboxyl transferase domain carries
out the following reaction; transcarboxylation from
biotin to an acceptor molecule. There are two recognised
types of carboxyl transferase. One of them uses acyl-CoA
and the other uses 2-oxoacid as the acceptor molecule of
carbon dioxide. All of the members in this family
utilise acyl-CoA as the acceptor molecule.
Length = 487
Score = 232 bits (594), Expect = 1e-74
Identities = 92/192 (47%), Positives = 124/192 (64%), Gaps = 13/192 (6%)
Query: 19 ILKLNPK-APGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGS 77
++ P+ G + I++A K+ARFIR CDAFNIP+V +DVPGFLPG QE+ GI++HG+
Sbjct: 296 VVANQPRVLAGVLFIDSADKAARFIRDCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGA 355
Query: 78 KLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILY 137
KLLYA AE+TVPKITVI RKAYGGAY VM K +D +AWPTA IAVMG +GAV I +
Sbjct: 356 KLLYALAEATVPKITVIPRKAYGGAYVVMDSKINGADAVFAWPTARIAVMGPEGAVEIKF 415
Query: 138 RKEK------------DKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKF 185
RKE ++ EY ++ P AA +G+ D +I+P TR ++ L
Sbjct: 416 RKELAAATMRYKDLEALRAQKIAEYEEQLSPPYVAAARGFADLVIDPGRTRAKLVIALAL 475
Query: 186 LLNKKQDNPYKK 197
L +K + P++K
Sbjct: 476 LWHKPRFFPWRK 487
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 91.0 bits (226), Expect = 2e-21
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 34 AAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITV 93
+A+K A FI C IP++ ++ GF+ G E GI + G+K++ A A + VPKIT+
Sbjct: 386 SALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITI 445
Query: 94 ITRKAYG-GAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN-----YE 147
I ++G G Y M + + + WP A I VMG A +L + E++ +
Sbjct: 446 IVGGSFGAGNYG-MCGRAYSPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWS 504
Query: 148 VEYNDKFRSPVAAA--KKG---------YIDDIIEPRTTRMRIAQDLKFLLN 188
E + F++ A ++ + D +I+P TR + L LN
Sbjct: 505 KEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALN 556
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 54.4 bits (131), Expect = 5e-09
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R ++ + F +PI+TFID PG PG+ E G ++ L A VP I TVI
Sbjct: 139 KALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIG 198
Query: 96 RKAYGGAYA--VMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDK 153
GGA A V + N+ Y +V+ +G AIL+ KD S
Sbjct: 199 EGGSGGALAIGVGDKVNMLEYSTY-------SVISPEGCAAILW---KDASKAPKAAEAM 248
Query: 154 FRSPVAAAKKGYIDDII-EP 172
+ + G ID II EP
Sbjct: 249 KITAPDLKELGLIDSIIPEP 268
>gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid
metabolism].
Length = 317
Score = 52.3 bits (126), Expect = 3e-08
Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 52/185 (28%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R ++ + F +PI+TFID PG PG+ E G ++ L A VP I VI
Sbjct: 138 KALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIG 197
Query: 96 RKAYGGAYAV-------MSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEV 148
GGA A+ M E + +V+ +G +IL++
Sbjct: 198 EGGSGGALAIGVADRVLMLE--------NST----YSVISPEGCASILWK---------- 235
Query: 149 EYNDKFRSPVAAA----------KKGYIDDIIE---------PRTTRMRIAQDLKFLLNK 189
D ++ AA + G ID II P + L L++
Sbjct: 236 ---DASKAKEAAEAMKITAHDLKELGIIDGIIPEPLGGAHRDPEAAAEALKNALLKELHE 292
Query: 190 KQDNP 194
P
Sbjct: 293 LDKLP 297
>gnl|CDD|235580 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 47.1 bits (113), Expect = 1e-06
Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 64/191 (33%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLG----IIRHGSKLLYAYAESTVPKI- 91
K+ R ++ + F +PI+TFID PG PG+ E G I R+ L A VP I
Sbjct: 139 KALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARN----LREMARLKVPIIC 194
Query: 92 TVITRKAYGGAYAV-------MSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKS 144
TVI GGA A+ M E Y+ +V+ +G +IL++
Sbjct: 195 TVIGEGGSGGALAIGVGDRVLMLE--------YST----YSVISPEGCASILWK------ 236
Query: 145 NYEVEYNDKFRSPVAAA----------KKGYIDDII-EP------------RTTRMRIAQ 181
D ++P AA + G ID+II EP + + +
Sbjct: 237 -------DASKAPEAAEAMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALLE 289
Query: 182 DLKFLLNKKQD 192
L L +
Sbjct: 290 ALAELKGLSPE 300
>gnl|CDD|178769 PLN03230, PLN03230, acetyl-coenzyme A carboxylase carboxyl
transferase; Provisional.
Length = 431
Score = 44.2 bits (104), Expect = 2e-05
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 33 NAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAES---TVP 89
N K+ RF+R + F PI+TF+D PG G+ E LG G + + E VP
Sbjct: 205 NGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELG---QGEAIAFNLREMFGLRVP 261
Query: 90 KI-TVITRKAYGGAYAV 105
I TVI GGA A+
Sbjct: 262 IIATVIGEGGSGGALAI 278
>gnl|CDD|214393 CHL00198, accA, acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional.
Length = 322
Score = 39.4 bits (92), Expect = 5e-04
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKI-TVIT 95
K+ R ++ + F +PI+TFID PG G+ E LG + L VP I T+I
Sbjct: 142 KALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIG 201
Query: 96 RKAYGGAYAV 105
GGA +
Sbjct: 202 EGGSGGALGI 211
>gnl|CDD|234116 TIGR03134, malonate_gamma, malonate decarboxylase, gamma subunit.
Members of this protein family are the gamma subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase, while the gamma subunit
appears either to mediate subunit interaction or to act
as a co-decarboxylase with the beta subunit. The beta
and gamma subunits exhibit some local sequence
similarity.
Length = 238
Score = 39.2 bits (92), Expect = 6e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 51 PIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTV---PKITVITRKAYGGAYAVMS 107
PIV +D P G +E LGI + + L A A + + P I ++ +A GA+
Sbjct: 68 PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLVYGRAISGAFLAHG 127
Query: 108 EKNLRSDVNYAWPTAEIAVMGSKGAVA 134
L++D A P A + VM ++A
Sbjct: 128 ---LQADRIIALPGAMVHVMD-LESMA 150
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 38.3 bits (89), Expect = 0.002
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLG---IIRHGSKLLYAYAESTVPKITV 93
K+ R + + D PIVTFID PG L E LG I H + ++ VP +++
Sbjct: 230 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGL---KVPIVSI 286
Query: 94 ITRK-AYGGAYAV 105
+ + GGA A+
Sbjct: 287 VIGEGGSGGALAI 299
>gnl|CDD|219196 pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This
family consists of several bacterial malonate
decarboxylase gamma subunit proteins. Malonate
decarboxylase of Klebsiella pneumoniae consists of four
different subunits and catalyzes the conversion of
malonate plus H+ to acetate and CO2. The catalysis
proceeds via acetyl and malonyl thioester residues with
the phosphribosyl-dephospho-CoA prosthetic group of the
acyl carrier protein (ACP) subunit. MdcD and E together
probably function as malonyl-S-ACP decarboxylase.
Length = 234
Score = 35.8 bits (83), Expect = 0.008
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 51 PIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAE---STVPKITVITRKAYGGAYAVMS 107
PI+ +D P E LGI + + L AY + P I ++ KA GA+
Sbjct: 66 PILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVIGLLYGKAMSGAFLAHG 125
Query: 108 EKNLRSDVNYAWPTAEIAVMG 128
L+++ A P A + VM
Sbjct: 126 ---LQANRLIALPGAMVHVMD 143
>gnl|CDD|183435 PRK12319, PRK12319, acetyl-CoA carboxylase subunit alpha;
Provisional.
Length = 256
Score = 33.6 bits (77), Expect = 0.048
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K+ R ++ + F P+VTFI+ G PG+ E G ++ L ++ VP I +I
Sbjct: 86 KALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIG 145
Query: 97 K-AYGGAYAV 105
+ GGA A+
Sbjct: 146 EGGSGGALAL 155
>gnl|CDD|184384 PRK13904, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 257
Score = 30.3 bits (69), Expect = 0.51
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 11 SEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFI-DVPGFLPGL 65
+ F+ I+I C++I A KS + + N+ F+ +PG L GL
Sbjct: 56 GKNFDYIKIDG------ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGL 105
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
metabolism].
Length = 294
Score = 28.8 bits (65), Expect = 1.8
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 85 ESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKS 144
E+ +P I+V+T GG V + + D+ A P A I G + V
Sbjct: 193 EAGLPYISVLTDPTTGG---VSASFAMLGDIIIAEPGALIGFAGPR--V----------- 236
Query: 145 NYEVEYNDKFRSPVAAA----KKGYIDDIIEPRTTRMRIAQDLKFLLNK 189
E +K A + G ID I+ R +A L L +
Sbjct: 237 -IEQTIREKLPEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQ 284
>gnl|CDD|238411 cd00796, INT_Rci, Rci recombinase, C-terminal catalytic domain.
Rci enzymes are found in IncI1 incompatibility group
plasmids such as R64. These recombinases belong to the
superfamily of DNA breaking-rejoining enzymes, which
share the same fold in their catalytic domain and the
overall reaction mechanism. The R64 Rci recombinase
mediates site specific recombination at the highly
mobile DNA segments called shufflon located in the
C-terminal region of the pilV gene, which determines the
recipient specificity in liquid mating. This gene
encodes a thin pilus component that recognizes
recipient's receptors required for liquid mating. The
recombination occurs between any of the seven inverted
repeats that separate four DNA segments of the shufflon.
The segments can be inverted independently or in groups,
resulting in a complex DNA rearrangement. The catalytic
domain of Rci is linked to a variable N-terminal domain,
whose function is unknown.
Length = 206
Score = 28.5 bits (64), Expect = 2.1
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 10 SSEKFNLIQILKLNPKAPGCIDINAAVKSARFIRFCDAFNIPIVTFID 57
S L+Q+L P I + A F R + + + F D
Sbjct: 114 SKRAVALLQMLPKVPDDGPVFPITSDSVDAAFRRAKERAGLEDLHFHD 161
>gnl|CDD|235073 PRK02813, PRK02813, putative aminopeptidase 2; Provisional.
Length = 428
Score = 28.6 bits (65), Expect = 2.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 30 IDINA-------AVKSARFIRFCDAFNIPIVTFI---DVPG 60
I INA A +A F C+ +P F+ D+P
Sbjct: 336 IKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSDMPC 376
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 28.0 bits (63), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 176 RMRIAQDLKFLLNKKQDNPYKKHGNI 201
R RI Q+L +LN +D+P KK +
Sbjct: 1 RKRIQQELARILNSFRDDPRKKKEAV 26
>gnl|CDD|183152 PRK11470, PRK11470, hypothetical protein; Provisional.
Length = 200
Score = 27.1 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 69 HLGIIRHGSKLLYAYAESTVPKITVITRKAY-----GGAYAV 105
H+GII + + AES VP TV T + YA+
Sbjct: 37 HVGIIIGHNGEDFLVAESRVPLSTVTTLSRFIKRSANQRYAI 78
>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit;
Provisional.
Length = 201
Score = 26.8 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 152 DKFRSPVAAAKKGYIDDIIEPR 173
D F SP A G ID +IEP
Sbjct: 172 DYFMSPEEAKAYGLIDSVIEPT 193
>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of
Chloroplasts 34-like (Toc34-like). The Toc34-like
(Translocon at the Outer-envelope membrane of
Chloroplasts) family contains several Toc proteins,
including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125,
and Toc90. The Toc complex at the outer envelope
membrane of chloroplasts is a molecular machine of ~500
kDa that contains a single Toc159 protein, four Toc75
molecules, and four or five copies of Toc34. Toc64 and
Toc12 are associated with the translocon, but do not
appear to be part of the core complex. The Toc
translocon initiates the import of nuclear-encoded
preproteins from the cytosol into the organelle. Toc34
and Toc159 are both GTPases, while Toc75 is a
beta-barrel integral membrane protein. Toc159 is
equally distributed between a soluble cytoplasmic form
and a membrane-inserted form, suggesting that assembly
of the Toc complex is dynamic. Toc34 and Toc75 act
sequentially to mediate docking and insertion of Toc159
resulting in assembly of the functional translocon.
Length = 248
Score = 26.5 bits (59), Expect = 8.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 53 VTFIDVPGFLPGLAQ 67
+ ID PG L Q
Sbjct: 81 LNIIDTPGLLESQDQ 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,294,512
Number of extensions: 967202
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 26
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)