RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5160
(203 letters)
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 271
Score = 174 bits (442), Expect = 3e-55
Identities = 104/188 (55%), Positives = 129/188 (68%), Gaps = 12/188 (6%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DINA+ K+ARF+R CD FNIPIV +DVPGFLPG QE+ GIIR G+KLLYAY E+T
Sbjct: 84 GCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEAT 143
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKS--- 144
VPKITVITRKAYGGAY VM K++ DVN AWPTA+IAVMG+ GAV +YR++ ++
Sbjct: 144 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAAN 203
Query: 145 ---------NYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPY 195
+ EY D +P AA++GY+D +I P TR I L+ L K P
Sbjct: 204 GEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPP 263
Query: 196 KKHGNIPL 203
KKHGN+PL
Sbjct: 264 KKHGNVPL 271
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 172 bits (436), Expect = 2e-54
Identities = 103/184 (55%), Positives = 135/184 (73%), Gaps = 8/184 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G +DI+++ K+ARFIRF DAFNIPI+TF+D PG+LPG+AQEH GIIRHG+KLLYAY+E+T
Sbjct: 81 GVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEAT 140
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VPKITVI RKAYGGAY M K+L +D+ AWP+AEIAVMG +GA I++++E + S+
Sbjct: 141 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNP 200
Query: 148 V--------EYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKHG 199
EY +F +P AA +GY+D +I+PR TR I + L+ K + P KKHG
Sbjct: 201 EETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCETKVEYRPKKKHG 260
Query: 200 NIPL 203
NIPL
Sbjct: 261 NIPL 264
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 170 bits (431), Expect = 1e-53
Identities = 103/185 (55%), Positives = 136/185 (73%), Gaps = 9/185 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
GC+DI A+ K+ARF+R CDAFN+P++TF+DVPGFLPG+ QEH GIIR G+KL++AYAE+T
Sbjct: 79 GCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 138
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VP ITVITRKA+GGAY VM K+L +D+N AWPTA+IAVMG++GAV IL+R+ + +
Sbjct: 139 VPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDD 198
Query: 148 V---------EYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
EY D +P AA++GY+D +I P TR I + L+ L K++ P KKH
Sbjct: 199 AEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKH 258
Query: 199 GNIPL 203
GNIPL
Sbjct: 259 GNIPL 263
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 167 bits (425), Expect = 1e-52
Identities = 97/184 (52%), Positives = 132/184 (71%), Gaps = 8/184 (4%)
Query: 27 PGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAES 86
GC+DINA+ K+A F+ FCD+FNIP+V +DVPGFLPG+ QE+ GIIRHG+K+LYAY+E+
Sbjct: 80 SGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEA 139
Query: 87 TVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN- 145
TVPKITV+ RKAYGG+Y M ++L +D YAWP+AEIAVMG++GA +++RKE ++
Sbjct: 140 TVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADD 199
Query: 146 -------YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNPYKKH 198
EY + F +P AA +G +DD+I+P TR +IA L+ K+Q P KKH
Sbjct: 200 PDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKH 259
Query: 199 GNIP 202
GN P
Sbjct: 260 GNFP 263
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 131 bits (329), Expect = 6e-38
Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 16/195 (8%)
Query: 24 PKAPGCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAY 83
G + VK F+ C +PIV D G G E ++ G L+Y+
Sbjct: 93 VGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSI 152
Query: 84 AESTVPKITVITRKAYGGAYAVMSEKNLRSDVNY--AWPTAEIAVMGSKGAVAILYRKEK 141
S +P+ + RK A+ V+ + EIAVM + A +Y +
Sbjct: 153 QTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRL 212
Query: 142 DKSNYE--------------VEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDLKFLL 187
K ++ P A+ G +D+I++ R + +
Sbjct: 213 AKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAY 272
Query: 188 NKKQDNPYKKHGNIP 202
+ +P
Sbjct: 273 QNPESICPFHQMILP 287
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 131 bits (331), Expect = 2e-37
Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 49/218 (22%)
Query: 21 KLNPKAPGCIDINAAVKSARFIR-FCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKL 79
L + N+A K+A+ I F + +P++ + GF G ++++GS +
Sbjct: 101 TLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160
Query: 80 LYAYAESTVPKITVI--TRKAYGGAYAVMSEKNLRSDVN-YAWPTAEIAVMGSKGAVAIL 136
+ A + P I I T + GG++ V+ + YA A V+ +G V I
Sbjct: 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIK 220
Query: 137 YRKEKDKSNYEV------EYNDKFRSPVAAAK---------------------------- 162
+R+EK E + + A +
Sbjct: 221 FRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFA 280
Query: 163 -----------KGYIDDIIEPRTTRMRIAQDLKFLLNK 189
KG I +E R L+ LN+
Sbjct: 281 DLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNE 318
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 95.9 bits (238), Expect = 2e-24
Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 20/178 (11%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G K+ R ++ + F +PI+TFID PG PG+ E G ++ L +
Sbjct: 130 GMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLG 189
Query: 88 VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYE 147
VP + + + G + D + +V+ +G +IL++
Sbjct: 190 VPVVCTVIGEGGSGGALAIG----VGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAA 245
Query: 148 VEYNDKFRSPVAAAKKGYIDDIIE-------------PRTTRMRIAQDLKFLLNKKQD 192
+ ID II + + ++ DL L +
Sbjct: 246 EAMGII---RPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTE 300
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 63.7 bits (154), Expect = 5e-13
Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 40 RFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITRKAY 99
R + N P++ F G A L + S L E +P I+V+T
Sbjct: 122 RAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTM 181
Query: 100 GGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRSPVA 159
GG A + D+N A P A I G + + F+
Sbjct: 182 GGVSASF---AMLGDLNIAEPKALIGFAG----------PRVIEQTVREKLPPGFQRSEF 228
Query: 160 AAKKGYIDDIIEPRTTRMRIAQDLKFLLNKKQDNP 194
+KG ID I+ R+++A L L+N NP
Sbjct: 229 LIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNP 263
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 56.9 bits (136), Expect = 2e-10
Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 8/164 (4%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAE-- 85
G A R ++P+V ++ G ++ R G + AE
Sbjct: 118 GAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELN 177
Query: 86 -STVPKITVITRKA-YGGAYAVMSEKNLRSDVN---YAWPTAEIAVMGSKGAVAILYRKE 140
+P I I GG Y +S + + + M KG V + Y E
Sbjct: 178 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANE 237
Query: 141 -KDKSNYEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDL 183
D + + + + G++ ++ + +
Sbjct: 238 IADMVDRTGKTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKY 281
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 39.3 bits (91), Expect = 1e-04
Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 16/158 (10%)
Query: 28 GCIDINAAVKSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAEST 87
G + A K + + IP++ D G QE + + ++ ++
Sbjct: 100 GSLGEMHAKKIVKLLDLALKMGIPVIGINDSGG---ARIQEGVDALAGYGEIFLRNTLAS 156
Query: 88 --VPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSN 145
VP+ITVI GGA + L + TA + + G K +
Sbjct: 157 GVVPQITVIAGPCAGGAVYSPA---LTDFIVMVDQTARMFITGP--------NVIKAVTG 205
Query: 146 YEVEYNDKFRSPVAAAKKGYIDDIIEPRTTRMRIAQDL 183
E+ D + V K G + + M + + L
Sbjct: 206 EEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTL 243
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 33.2 bits (75), Expect = 0.013
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 12/147 (8%)
Query: 37 KSARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLGIIRHGSKLLYAYAESTVPKITVITR 96
K + P++ D G LG+ + A +P+I++I
Sbjct: 112 KIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNN-ILASGVIPQISLIMG 170
Query: 97 KAYGGAYAVMSEKNLRSDVNYAWPTAEIAVMGSKGAVAILYRKEKDKSNYEVEYNDKFRS 156
A GG + L V T+++ + G + + EV + +
Sbjct: 171 AAAGGHVYSPA---LTDFVIMVDQTSQMFITGPDVIKTV--------TGEEVTMEELGGA 219
Query: 157 PVAAAKKGYIDDIIEPRTTRMRIAQDL 183
AK G ++L
Sbjct: 220 HTHMAKSGTAHYAASGEQDAFDYVREL 246
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 138
Score = 26.7 bits (58), Expect = 1.3
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 67 QEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV 126
Q + + R G + + + R+ A + + +
Sbjct: 18 QHNFSVFREGDAMAKGL------EQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLME 71
Query: 127 MGSKGAVAILYRKEKDKSNYEVEYNDK 153
AV+ +R E ++ ++ D+
Sbjct: 72 TAYATAVSANFRTESRGAHSRFDFPDR 98
>d1aora2 d.152.1.1 (A:1-210) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 125 AVMGSKGAVAILYRKEKD 142
AVMGSK AI K
Sbjct: 191 AVMGSKNLKAIAVEGSKT 208
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 134
Score = 25.5 bits (55), Expect = 2.9
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 67 QEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV 126
+E GI R + + ++ + + +D+ Y
Sbjct: 18 EEGCGIYRTPELMQKTIDK------LAELQERFKRVRITDTSSVFNTDLLYTIELGHGLN 71
Query: 127 MGSKGAVAILYRKEKDKSNYEVEYNDKFR 155
+ A + + RKE ++ ++ R
Sbjct: 72 VAECMAHSAMARKESRGAHQRLDEGCTER 100
>d1b25a2 d.152.1.1 (A:1-210) Formaldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 25.8 bits (57), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 125 AVMGSKGAVAILYRKEKD 142
AVMGSK A++ R K+
Sbjct: 189 AVMGSKKLKAVVIRGTKE 206
>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus
cereus [TaxId: 1396]}
Length = 170
Score = 25.1 bits (54), Expect = 4.9
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 39 ARFIRFCDAFNIPIVTFIDVPGFLPGLAQEHLG 71
+ + F ++ I D PGF EHLG
Sbjct: 112 FKSLYFRESNGILFEIATDGPGFTVDGDVEHLG 144
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 198
Score = 25.4 bits (55), Expect = 5.2
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 67 QEHLGIIRHGSKLLYAYAESTVPKITVITRKAYGGAYAVMSEKNLRSDVNYAWPTAEIAV 126
+++GI R G L A ++ + K + ++ A+ +
Sbjct: 18 DDNVGIFRDGPHLEKAVK-----ELEEL-YKKSKNVGIKNKRLHANPELEEAYRVPMMLK 71
Query: 127 MGSKGAVAILYRKEKDKSNYEVEYNDK 153
+ A L R E ++ +Y +
Sbjct: 72 VALCVAKGALDRTESRGAHNREDYPKR 98
>d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120
[TaxId: 1167]}
Length = 240
Score = 24.4 bits (52), Expect = 10.0
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 142 DKSNYEVEYNDKFRSPVAAAKKGYIDDIIEP-RTTRMRIAQDLKFLLNKKQDNPYKKHG 199
K+ Y + YN+ + A + + R R + L + + Y G
Sbjct: 27 VKNQYALSYNNSKGTANWVAWQLNSSWLGNAERQDNFRPDKTLPAGWVRVTPSMYSGSG 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,585
Number of extensions: 33887
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 22
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)