BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5165
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WMH|A Chain A, Crystal Structure Of A Pb1 Domain Complex Of Protein
Kinase C Iota And Par6 Alpha
pdb|1VD2|A Chain A, Solution Structure Of The Pb1 Domain Of Pkciota
Length = 89
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 88 SEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 147
++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA RLY
Sbjct: 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74
Query: 148 EVNHEPELVIH 158
E+N + EL+IH
Sbjct: 75 ELNKDSELLIH 85
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 1 MELEEAIRLYEVNHEPELVIH 21
+ELEEA RLYE+N + EL+IH
Sbjct: 65 LELEEAFRLYELNKDSELLIH 85
>pdb|2OHC|A Chain A, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm1728
pdb|2OHC|B Chain B, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm1728
Length = 289
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 101 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIHGK 160
YDR+Q ++ + D FTV DEEGDP + S+Q L P + + G+
Sbjct: 110 YDRIQ--FSDLVENPVDYYFTV---DEEGDPTVYSSQEIFPGGRNLVSPVSAPVVRMGGR 164
Query: 161 S 161
S
Sbjct: 165 S 165
>pdb|2OHE|A Chain A, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm 1728
Length = 290
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 101 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIHGK 160
YDR+Q ++ + D FTV DEEGDP + S+Q L P + + G+
Sbjct: 111 YDRIQ--FSDLVENPVDYYFTV---DEEGDPTVYSSQEIFPGGRNLVSPVSAPVVRMGGR 165
Query: 161 S 161
S
Sbjct: 166 S 166
>pdb|1WJ6|A Chain A, Solution Structure Of Rsgi Ruh-024, A Pb1 Domain In Human
Cdna, Kiaa0049
Length = 101
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 107 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 146
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 40 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 80
>pdb|2BKF|A Chain A, Structure Of The Pb1 Domain Of Nbr1
Length = 87
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 107 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 146
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 32 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 72
>pdb|2G4S|A Chain A, Anomalous Substructure Of Nbr1pb1
Length = 86
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 107 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 146
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 31 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 71
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 91 FITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 150
++ P++ Y RL+ E ++C V+ D +G+ + S + L++ R YE N
Sbjct: 145 YVRSRGPELFYGRLRNEKSDLC-------LDVEGSDGKGNVLMYSCEDNLDQWFRYYE-N 196
Query: 151 HEPELVIHGKSTYLISLHG 169
E +++ KS + + G
Sbjct: 197 GE---IVNAKSGMCLDVEG 212
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 12 VNHEPELVIHGNLWTWQWWNKFW 34
+ HE GNL T +WWN W
Sbjct: 322 IAHELAHQWFGNLVTIEWWNDLW 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,392,456
Number of Sequences: 62578
Number of extensions: 215162
Number of successful extensions: 608
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 38
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)