Query psy5165
Match_columns 169
No_of_seqs 84 out of 86
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 19:03:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 100.0 2.3E-34 8E-39 211.3 9.2 87 76-162 3-89 (89)
2 2bkf_A Zinc-finger protein NBR 99.5 5.4E-15 1.9E-19 109.2 6.2 80 78-161 5-86 (87)
3 1wj6_A KIAA0049 protein, RSGI 99.5 1.3E-14 4.5E-19 109.7 5.8 83 77-163 12-96 (101)
4 2kkc_A Sequestosome-1; P62, PB 99.4 9.6E-13 3.3E-17 98.5 6.5 78 79-159 5-99 (102)
5 2ktr_A Sequestosome-1; autopha 99.3 3.4E-12 1.2E-16 98.0 7.2 80 77-159 18-114 (117)
6 1wmh_B Partitioning defective- 98.8 4.2E-09 1.4E-13 77.3 5.4 72 75-147 2-75 (86)
7 1q1o_A Cell division control p 98.2 4.2E-06 1.4E-10 62.6 7.1 78 80-157 6-95 (98)
8 1ip9_A BEM1 protein; ubiquitin 97.9 2.4E-05 8.1E-10 57.6 6.4 74 70-146 3-76 (85)
9 1pqs_A Cell division control p 97.6 0.00011 3.9E-09 52.2 5.7 71 88-158 1-75 (77)
10 2cu1_A Mitogen-activated prote 97.3 0.00048 1.7E-08 52.3 6.2 77 78-159 7-84 (103)
11 2npt_B Mitogen-activated prote 95.8 0.022 7.5E-07 43.1 6.3 69 78-151 19-87 (100)
12 1oey_A P67-PHOX, neutrophil cy 95.5 0.023 7.9E-07 41.0 5.3 67 80-148 6-72 (83)
13 2jrh_A Mitogen-activated prote 95.5 0.039 1.3E-06 41.3 6.6 68 79-151 4-71 (94)
14 1oey_J P40-PHOX, neutrophil cy 95.3 0.032 1.1E-06 42.6 5.6 62 89-153 19-84 (107)
15 2c60_A Human mitogen-activated 94.3 0.1 3.4E-06 40.1 6.2 68 78-150 30-97 (111)
16 2npt_A Dual specificity mitoge 93.4 0.27 9.3E-06 37.4 7.0 76 70-148 7-84 (106)
17 1v86_A DNA segment, CHR 7, way 53.2 18 0.00061 24.8 4.1 41 78-118 16-56 (95)
18 1v5t_A 8430435I17RIK protein; 51.9 15 0.00051 24.8 3.5 42 78-119 6-48 (90)
19 2kd0_A LRR repeats and ubiquit 49.4 23 0.00078 23.7 4.1 43 76-118 9-51 (85)
20 1wxv_A BAG-family molecular ch 45.8 27 0.00092 23.2 4.0 40 79-118 7-51 (92)
21 2l7r_A Ubiquitin-like protein 44.4 21 0.00072 24.2 3.4 47 69-118 11-57 (93)
22 1wgg_A Ubiquitin carboxyl-term 43.1 29 0.001 23.9 4.0 42 78-119 6-48 (96)
23 2dzi_A Ubiquitin-like protein 40.7 44 0.0015 21.0 4.3 32 86-117 15-46 (81)
24 3qij_A Protein 4.1; cytoskelet 38.6 32 0.0011 27.9 4.1 69 75-143 13-82 (296)
25 2kvz_A ISPE; structural genomi 38.4 15 0.00052 26.2 1.9 20 113-132 2-21 (85)
26 3plu_A Ubiquitin-like modifier 36.8 84 0.0029 22.6 5.7 72 74-155 16-88 (93)
27 1ef1_A Moesin; membrane, FERM 35.2 58 0.002 25.7 5.1 52 81-132 3-54 (294)
28 1iru_D 20S proteasome; cell cy 34.5 69 0.0023 25.2 5.4 57 95-153 176-238 (248)
29 2bwf_A Ubiquitin-like protein 33.8 49 0.0017 20.6 3.7 37 80-118 7-43 (77)
30 2dzm_A FAS-associated factor 1 32.6 45 0.0015 23.8 3.6 41 79-119 9-49 (100)
31 2kk8_A Uncharacterized protein 32.3 1.1E+02 0.0038 20.3 5.5 33 86-118 18-50 (84)
32 2byo_A Lipoprotein LPPX; lipid 30.7 19 0.00066 28.5 1.6 40 92-135 144-183 (207)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 29.7 74 0.0025 20.4 4.1 32 87-118 16-47 (87)
34 4b6w_A Tubulin-specific chaper 29.2 55 0.0019 22.3 3.5 69 87-160 13-81 (86)
35 1wx8_A Riken cDNA 4931431F19; 28.2 71 0.0024 21.2 3.9 40 79-118 17-56 (96)
36 1whv_A Poly(A)-specific ribonu 27.1 70 0.0024 23.8 3.9 64 89-160 17-80 (100)
37 3n3k_B Ubiquitin; hydrolase, p 26.2 64 0.0022 20.4 3.2 33 86-118 11-43 (85)
38 4af0_A Inosine-5'-monophosphat 26.0 38 0.0013 31.6 2.9 63 80-153 108-170 (556)
39 4eew_A Large proline-rich prot 25.5 58 0.002 21.1 3.0 47 73-119 11-58 (88)
40 1wf9_A NPL4 family protein; be 25.0 87 0.003 21.8 4.0 37 80-118 10-47 (107)
41 1ryp_D 20S proteasome; multica 23.7 78 0.0027 24.6 3.9 51 96-148 181-235 (241)
42 1v6e_A Cytoskeleton-associated 23.4 89 0.0031 21.0 3.7 40 80-119 8-49 (95)
43 1y8x_B Ubiquitin-activating en 23.3 73 0.0025 23.0 3.4 56 90-146 6-62 (98)
44 2kt7_A Putative peptidoglycan 23.2 37 0.0013 24.9 1.8 19 115-133 3-21 (102)
45 2al6_A Focal adhesion kinase 1 22.2 1.6E+02 0.0054 24.6 5.7 58 90-147 23-81 (375)
46 3mtn_B UBA80, ubcep1, ubiquiti 21.4 93 0.0032 19.5 3.3 31 87-117 12-42 (85)
47 4f6o_A Metacaspase-1; rossmann 21.1 2.3E+02 0.008 24.4 6.7 57 101-159 77-135 (350)
48 1v5o_A 1700011N24RIK protein; 21.0 1E+02 0.0035 21.0 3.6 31 88-118 21-51 (102)
49 4dwf_A HLA-B-associated transc 20.7 82 0.0028 20.5 3.0 32 87-118 14-45 (90)
50 2kdi_A Ubiquitin, vacuolar pro 20.7 1E+02 0.0036 21.7 3.7 43 75-118 7-49 (114)
51 2ct9_A Calcium-binding protein 20.2 1.1E+02 0.0036 22.1 3.7 58 96-157 75-132 (208)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=100.00 E-value=2.3e-34 Score=211.27 Aligned_cols=87 Identities=44% Similarity=0.841 Sum_probs=84.4
Q ss_pred cccceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcE
Q psy5165 76 ISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL 155 (169)
Q Consensus 76 ~t~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSEL 155 (169)
++.++.+|++|+||+++++++++++|++||+++|++|++..+|+||+||+||||||||||||+||+||+|+|++|++++|
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l 82 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSEL 82 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCE
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeee
Q psy5165 156 VIHGKST 162 (169)
Q Consensus 156 lIHvf~~ 162 (169)
+|||||.
T Consensus 83 ~ihvf~~ 89 (89)
T 1vd2_A 83 LIHVFPC 89 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEccC
Confidence 9999994
No 2
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.55 E-value=5.4e-15 Score=109.16 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=70.8
Q ss_pred cceehhhhccceeEEEec--CCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcE
Q psy5165 78 FTLHCYFIIFSEVFITYI--KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL 155 (169)
Q Consensus 78 ~~l~~k~~y~GDimitsl--e~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSEL 155 (169)
+++.+|+.|+|+...+.+ +..+++++|-..++..|+++ .|.+||.||||||++|+||.|++||+|+ ..+++.+|
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkv-a~k~~n~L 80 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKM-AVKQGNQL 80 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHH-HHHTTTEE
T ss_pred ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHH-hccCCCEE
Confidence 577889999999999555 55999999999999999998 5699999999999999999999999995 55666779
Q ss_pred EEeeee
Q psy5165 156 VIHGKS 161 (169)
Q Consensus 156 lIHvf~ 161 (169)
.+|++-
T Consensus 81 ~m~v~~ 86 (87)
T 2bkf_A 81 QMQVHE 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999874
No 3
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.51 E-value=1.3e-14 Score=109.70 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=72.7
Q ss_pred ccceehhhhccceeEEEec--CCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCc
Q psy5165 77 SFTLHCYFIIFSEVFITYI--KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPE 154 (169)
Q Consensus 77 t~~l~~k~~y~GDimitsl--e~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSE 154 (169)
-+++.+|+.|+|+...+.+ +..+++++|-..++..|+++ .|.+||.|||||+++|+||.|++||+|+ ..+++.+
T Consensus 12 ~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkv-a~k~~n~ 87 (101)
T 1wj6_A 12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKM-AVKQGNQ 87 (101)
T ss_dssp CSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHH-HHHHTSE
T ss_pred CccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHH-hccCCCE
Confidence 3567889999999999555 66999999999999999998 5689999999999999999999999995 4566677
Q ss_pred EEEeeeeee
Q psy5165 155 LVIHGKSTY 163 (169)
Q Consensus 155 LlIHvf~~~ 163 (169)
|.+||+-+.
T Consensus 88 L~m~V~~~~ 96 (101)
T 1wj6_A 88 LQMQVHEGS 96 (101)
T ss_dssp EEEECCBCC
T ss_pred EEEEEeecc
Confidence 999998754
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.36 E-value=9.6e-13 Score=98.49 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=64.8
Q ss_pred ceehhhhcc------ceeEEEecCCC-----------CChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHH
Q psy5165 79 TLHCYFIIF------SEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELE 141 (169)
Q Consensus 79 ~l~~k~~y~------GDimitsle~s-----------IsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELe 141 (169)
.+++|+++. .++..++++.+ .+|++|+++++++|..-.+..|++||.|||||++|||++.||.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~ 84 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT 84 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence 357888885 69999998742 4899999999999976667789999999999999999999999
Q ss_pred HHHhhhhcCCCCcEEEee
Q psy5165 142 EAIRLYEVNHEPELVIHG 159 (169)
Q Consensus 142 EAiRLyeLnKDSELlIHv 159 (169)
+|+.... +..|-|.+
T Consensus 85 ~Al~~~~---~~~lRlyV 99 (102)
T 2kkc_A 85 MAMSYVK---DDIFRIYI 99 (102)
T ss_dssp HHHHHCC---SSEEEEEE
T ss_pred HHHHhcC---CCeEEEEE
Confidence 9998654 44454544
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.31 E-value=3.4e-12 Score=97.98 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=65.3
Q ss_pred ccceehhhhcc------ceeEEEecCCC-----------CChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHH
Q psy5165 77 SFTLHCYFIIF------SEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQME 139 (169)
Q Consensus 77 t~~l~~k~~y~------GDimitsle~s-----------IsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlE 139 (169)
...+++|+++. +++..++++.+ .+|+.|+++++++|..-.+..|++||.|||||++|||++.|
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeE 97 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEE 97 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHH
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHH
Confidence 34689999996 79999999743 49999999999999555566799999999999999999999
Q ss_pred HHHHHhhhhcCCCCcEEEee
Q psy5165 140 LEEAIRLYEVNHEPELVIHG 159 (169)
Q Consensus 140 LeEAiRLyeLnKDSELlIHv 159 (169)
|.+|+.... +..|-|.+
T Consensus 98 L~~Al~~~~---~~~lRlyV 114 (117)
T 2ktr_A 98 LTMAMSYVK---DDIFRIYI 114 (117)
T ss_dssp HHHHHHHCC---SSEEEEEE
T ss_pred HHHHHHhcC---CCeEEEEE
Confidence 999998653 34444444
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=98.82 E-value=4.2e-09 Score=77.30 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=64.0
Q ss_pred ccccceehhhhccceeEEEecCCC--CChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhh
Q psy5165 75 HISFTLHCYFIIFSEVFITYIKPD--ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 147 (169)
Q Consensus 75 ~~t~~l~~k~~y~GDimitsle~s--IsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLy 147 (169)
+++..+.+|..|.+|+...+++++ .+||+|+..++.++.+.+. +|+++|.|++||-.+||++.+|.+|+...
T Consensus 2 ~~~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~-~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 2 PHMSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGL-DVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp ---CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTC-CCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred CCCCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCC-CEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 466789999999999999999855 8999999999999998655 79999999999999999999999999854
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=98.18 E-value=4.2e-06 Score=62.58 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=65.3
Q ss_pred eehhhhcc--------ceeEEEecCCCCChhHHHHHHHHhhccC-CC---ceeeeeeeeccCCccccCcHHHHHHHHhhh
Q psy5165 80 LHCYFIIF--------SEVFITYIKPDITYDRLQEEVKEMCKFS-TD---QVFTVKWVDEEGDPCLISTQMELEEAIRLY 147 (169)
Q Consensus 80 l~~k~~y~--------GDimitsle~sIsfE~LC~evRd~C~f~-nk---Q~FT~KWVDEEGDPCTISSQlELeEAiRLy 147 (169)
+.+|++|+ +|+++.-+.++|+|.+|++++++-.++. ++ ..+.+|+-||+||=.|+.+|..|+-|+.-.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 88999999 8899999999999999999999988864 22 237899999999999999999999999876
Q ss_pred hcCCCCcEEE
Q psy5165 148 EVNHEPELVI 157 (169)
Q Consensus 148 eLnKDSELlI 157 (169)
.=+...-|.|
T Consensus 86 ~e~~~~~l~I 95 (98)
T 1q1o_A 86 AENNEKFLNI 95 (98)
T ss_dssp HHTTCCEEEE
T ss_pred HhhhcCeEEE
Confidence 5444444444
No 8
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=97.91 E-value=2.4e-05 Score=57.59 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=62.8
Q ss_pred cccccccccceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhh
Q psy5165 70 YCKFLHISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 146 (169)
Q Consensus 70 ~~~~~~~t~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRL 146 (169)
||...+..+.+-+|..|++|+++.-++++|+|++||+++++--..++..++.-| =|.+|+ -+.|+.+|+-|+.-
T Consensus 3 ~~~~~pq~~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 3 MGSSTSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp CSCCCCCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred cccCCCccCceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence 344445557789999999999999999999999999999999999877777776 445888 88999999999863
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=97.59 E-value=0.00011 Score=52.24 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=56.7
Q ss_pred ceeEEEecCCCCChhHHHHHHHHhhccC-C---CceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcEEEe
Q psy5165 88 SEVFITYIKPDITYDRLQEEVKEMCKFS-T---DQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH 158 (169)
Q Consensus 88 GDimitsle~sIsfE~LC~evRd~C~f~-n---kQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSELlIH 158 (169)
.|.++..++++|+|.+|.+++++-.+.. + ...+.+|+-||+||=.|+.+|..|+-|+.-..-+...-|.|-
T Consensus 1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~~~~~~~leiW 75 (77)
T 1pqs_A 1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNIR 75 (77)
T ss_dssp CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHHhhhcCeEEEE
Confidence 3778889999999999999999988853 1 245789999999999999999999999986643333334443
No 10
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.29 E-value=0.00048 Score=52.32 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=61.9
Q ss_pred cceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCC-cEE
Q psy5165 78 FTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEP-ELV 156 (169)
Q Consensus 78 ~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDS-ELl 156 (169)
..+++|+-|+|+..|.-++++++|++|..++.++|+. ..++.+.|-| =-+-+-+|.+|+.|+-++..+... .|-
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq----~ldL~y~n~E-llIpl~sQeDLDkaIellDrss~~kSLr 81 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRSIHMKSLK 81 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSS----CEEEEECSSS-SCEECCSHHHHHHHHHHHHHCSSCCSEE
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCC----eeeEEEecce-EEEeccCHHHHHHHHHHHccCCcccceE
Confidence 4579999999999999999999999999999999986 4678787544 344566999999999998877332 344
Q ss_pred Eee
Q psy5165 157 IHG 159 (169)
Q Consensus 157 IHv 159 (169)
|++
T Consensus 82 IlL 84 (103)
T 2cu1_A 82 ILL 84 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 11
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=95.80 E-value=0.022 Score=43.08 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=56.7
Q ss_pred cceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCC
Q psy5165 78 FTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH 151 (169)
Q Consensus 78 ~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnK 151 (169)
..+++|+-|+|+..|.-+.+++.|++|..++.+.|+.. ..+.+..-| =-+-+-.|.+|+-|+-|...+.
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~----ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs~ 87 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS----MDLHYTNNE-LVIPLTTQDDLDKAVELLDRSI 87 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSC----EEEEEEETT-EEEECCCHHHHHHHHHHHHHCS
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe----eeeEEecce-eEEecccHHHHHHHHHHhccCc
Confidence 56799999999999999999999999999999999754 567676433 2344569999999999966553
No 12
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.52 E-value=0.023 Score=41.02 Aligned_cols=67 Identities=6% Similarity=0.124 Sum_probs=56.2
Q ss_pred eehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhh
Q psy5165 80 LHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 148 (169)
Q Consensus 80 l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLye 148 (169)
..+|.+|. +.+.....+.++|.+|.+++++--.+..+ -.++.+=||++.=..++++..|++|++...
T Consensus 6 ~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~-~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~ 72 (83)
T 1oey_A 6 YTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLE-HTKLSYRPRDSNELVPLSEDSMKDAWGQVK 72 (83)
T ss_dssp EEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGG-GCCEEECCTTCSSCEECCTTTHHHHHTTCB
T ss_pred EEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcc-eeEEEeeCCCCCCeeccChHHHHHHHHhcc
Confidence 57799999 99999999999999999999999999744 467888885544444999999999998743
No 13
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=95.51 E-value=0.039 Score=41.34 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=55.9
Q ss_pred ceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCC
Q psy5165 79 TLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH 151 (169)
Q Consensus 79 ~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnK 151 (169)
.+++|+-|+|+..|.-+.+++.|++|..++.+.|+. ...+.+...| =-+-+-+|.+|+-|+-|...+.
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs~ 71 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRSS 71 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCS----SEEEEEECSS-CEEECCSHHHHHHHHHHHHHST
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-eEEeccCHHHHHHHHHHhccCc
Confidence 468999999999999999999999999999999964 4567676433 3445569999999999966553
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.27 E-value=0.032 Score=42.59 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=50.0
Q ss_pred eeEEEecCCCC----ChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCC
Q psy5165 89 EVFITYIKPDI----TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEP 153 (169)
Q Consensus 89 Dimitsle~sI----sfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDS 153 (169)
++.-.+++.++ +|++|..-||....- .-+++++-|.|||-+++.++.+++-+++-...+...
T Consensus 19 ~irdI~veedl~~~P~ykdLl~lmr~~F~~---~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~~s~ 84 (107)
T 1oey_J 19 TIKDIAVEEDLSSTPLLKDLLELTRREFQR---EDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQ 84 (107)
T ss_dssp EEEEEEECSCTTCCCCHHHHHHHHHHHHCC---SSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCT
T ss_pred eeeeEEEccccccCCCHHHHHHHHHHHhcc---cceeeeeecCCCCEEEEcchHHHHHHHHHhhcCccc
Confidence 33344555543 799999999999883 368999999999999999999999999888665544
No 15
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=94.32 E-value=0.1 Score=40.09 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=55.5
Q ss_pred cceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcC
Q psy5165 78 FTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 150 (169)
Q Consensus 78 ~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLn 150 (169)
..+++|+-|+|+..|.-+.+++.|++|..++.+.|+. +..+.+...| =-+-+-.|.+|+-|+-|...+
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSS----CCEEEEECSS-CEEECCSHHHHHHHHHHHHHC
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-EEEecccHHHHHHHHHHhccC
Confidence 4569999999999999999999999999999999965 4556666433 334455999999999996655
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=93.42 E-value=0.27 Score=37.37 Aligned_cols=76 Identities=11% Similarity=0.214 Sum_probs=55.3
Q ss_pred cccccccccceehhhhccceeEEEecC--CCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhh
Q psy5165 70 YCKFLHISFTLHCYFIIFSEVFITYIK--PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 147 (169)
Q Consensus 70 ~~~~~~~t~~l~~k~~y~GDimitsle--~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLy 147 (169)
.++|..-+--|++|.-=+|++= -..+ +.++|.++.+.++++-- ........+-||+||-+||-|+.||+-.+.-|
T Consensus 7 ~~~M~a~~lVIRIk~p~~g~vD-waV~~~~~L~FrDvL~~I~~vmP--~aT~TAFeYEDE~gDRITVRSDeE~kAMlsyy 83 (106)
T 2npt_A 7 FPAMENQVLVIRIKIPNSGAVD-WTVHSGPQLLFRDVLDVIGQVLP--EATTTAFEYEDEDGDRITVRSDEEMKAMLSYY 83 (106)
T ss_dssp CCCC--CCEEEEEEETTTEEEE-EEECC--CCCHHHHHHHHHHHST--TSCCSEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCCccc-cccCCcccccHHHHHHHHHHhCc--cceeeeeeeccccCCeeEEcchHHHHHHHHHH
Confidence 4556666667788877666653 3344 67899999999999853 33334567899999999999999999888765
Q ss_pred h
Q psy5165 148 E 148 (169)
Q Consensus 148 e 148 (169)
.
T Consensus 84 ~ 84 (106)
T 2npt_A 84 Y 84 (106)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.21 E-value=18 Score=24.81 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=34.8
Q ss_pred cceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 78 FTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 78 ~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
.++++.+.++|..+...++++.++++|-.++.+.+++..++
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 34556666889999999999999999999999999988664
No 18
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=51.90 E-value=15 Score=24.82 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=34.8
Q ss_pred cceehhhhccceeEEE-ecCCCCChhHHHHHHHHhhccCCCce
Q psy5165 78 FTLHCYFIIFSEVFIT-YIKPDITYDRLQEEVKEMCKFSTDQV 119 (169)
Q Consensus 78 ~~l~~k~~y~GDimit-sle~sIsfE~LC~evRd~C~f~nkQ~ 119 (169)
.++++...++|..+.. .++++-++.+|-.++.+..++..++.
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~Q 48 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQ 48 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTC
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHe
Confidence 3455556678999888 89999999999999999999986643
No 19
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=49.41 E-value=23 Score=23.70 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=36.0
Q ss_pred cccceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 76 ISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 76 ~t~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+-+++.....++|..+...++++.+.++|-.++.+..+++.++
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 51 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRG 51 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTT
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 3455666777899999999999999999999999999987653
No 20
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.77 E-value=27 Score=23.22 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=32.1
Q ss_pred ceehhhhccceeEEEecCCC-----CChhHHHHHHHHhhccCCCc
Q psy5165 79 TLHCYFIIFSEVFITYIKPD-----ITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 79 ~l~~k~~y~GDimitsle~s-----IsfE~LC~evRd~C~f~nkQ 118 (169)
++++.+..+|......++++ .++.+|..++...+++..++
T Consensus 7 ~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~ 51 (92)
T 1wxv_A 7 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSF 51 (92)
T ss_dssp SEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTT
T ss_pred eEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHH
Confidence 45555555788888889985 99999999999999988654
No 21
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=44.43 E-value=21 Score=24.18 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=32.1
Q ss_pred ccccccccccceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 69 SYCKFLHISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 69 ~~~~~~~~t~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+-|++....-++.+|. |......++++.+.++|-+++.+..+++.++
T Consensus 11 ~~~~~~~~~m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (93)
T 2l7r_A 11 SSGLVPRGSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPED 57 (93)
T ss_dssp ---------CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGG
T ss_pred ccCCCCCCcEEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhH
Confidence 3455666666666776 7888889999999999999999999987553
No 22
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.06 E-value=29 Score=23.87 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=34.8
Q ss_pred cceehhhhccceeE-EEecCCCCChhHHHHHHHHhhccCCCce
Q psy5165 78 FTLHCYFIIFSEVF-ITYIKPDITYDRLQEEVKEMCKFSTDQV 119 (169)
Q Consensus 78 ~~l~~k~~y~GDim-itsle~sIsfE~LC~evRd~C~f~nkQ~ 119 (169)
.++++.+.++|... ...++++-++.+|-.++.+..++..++.
T Consensus 6 ~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~Q 48 (96)
T 1wgg_A 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQ 48 (96)
T ss_dssp CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTS
T ss_pred cEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 45566666789998 5899999999999999999999986653
No 23
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.73 E-value=44 Score=20.99 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=28.0
Q ss_pred ccceeEEEecCCCCChhHHHHHHHHhhccCCC
Q psy5165 86 IFSEVFITYIKPDITYDRLQEEVKEMCKFSTD 117 (169)
Q Consensus 86 y~GDimitsle~sIsfE~LC~evRd~C~f~nk 117 (169)
.+|..+...++++.+..+|-+++....+++.+
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 46 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVR 46 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 56788888999999999999999999988755
No 24
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=38.58 E-value=32 Score=27.92 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=50.4
Q ss_pred ccccceehhhhc-cceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHH
Q psy5165 75 HISFTLHCYFII-FSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEA 143 (169)
Q Consensus 75 ~~t~~l~~k~~y-~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEA 143 (169)
+....+.+++.+ +|......++.+.+..++++++-+--++.+.+-|-+-.+|.+|...-+.+...+.+.
T Consensus 13 ~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 13 NLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp ----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred CCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 444556677665 778889999999999999999999999999988988777766654444444444443
No 25
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=38.37 E-value=15 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.1
Q ss_pred ccCCCceeeeeeeeccCCcc
Q psy5165 113 KFSTDQVFTVKWVDEEGDPC 132 (169)
Q Consensus 113 ~f~nkQ~FT~KWVDEEGDPC 132 (169)
.|..+++.|+++|||+|..+
T Consensus 2 ~~~k~~~VtV~YvDe~Gn~L 21 (85)
T 2kvz_A 2 DFGKPNQVTVNYLDENNTSI 21 (85)
T ss_dssp CSSCCCCEEEEEECSSSCEE
T ss_pred CcccCCeEEEEEECCCCCCC
Confidence 36678899999999998643
No 26
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=36.76 E-value=84 Score=22.62 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=47.8
Q ss_pred cccccceehhhh-ccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCC
Q psy5165 74 LHISFTLHCYFI-IFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHE 152 (169)
Q Consensus 74 ~~~t~~l~~k~~-y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKD 152 (169)
-..++++++... ..|......++++-+..+|=.++.+..+.+.+|.--.+|=..=-|-.|++ =|+++.+
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~----------dY~I~dg 85 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLE----------DYEVHDQ 85 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTG----------GGTCCTT
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHH----------HcCCCCC
Confidence 345667777665 57888899999999999999999999999988764444422222333433 3666666
Q ss_pred CcE
Q psy5165 153 PEL 155 (169)
Q Consensus 153 SEL 155 (169)
+.|
T Consensus 86 stL 88 (93)
T 3plu_A 86 TNL 88 (93)
T ss_dssp CEE
T ss_pred CEE
Confidence 543
No 27
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=35.24 E-value=58 Score=25.71 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=40.2
Q ss_pred ehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCcc
Q psy5165 81 HCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPC 132 (169)
Q Consensus 81 ~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPC 132 (169)
.+++.+-.+.+...++++.+..++++++-+.-++.+.+-|.+-.+|.+|...
T Consensus 3 ~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~ 54 (294)
T 1ef1_A 3 SVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFST 54 (294)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEE
T ss_pred EEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCcee
Confidence 3444444445678899999999999999999999999889886667666543
No 28
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=34.50 E-value=69 Score=25.19 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=40.8
Q ss_pred cCCCC--ChhHHHHH----HHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCC
Q psy5165 95 IKPDI--TYDRLQEE----VKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEP 153 (169)
Q Consensus 95 le~sI--sfE~LC~e----vRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDS 153 (169)
..+++ +.++...- ++.... .++..+.+.+|+.+| ++.+-+..|+++.+.-.+-.+..
T Consensus 176 ~~~~m~~s~eea~~la~~al~~~~~-~sg~~i~v~vi~~~g-~~~~l~~~ei~~~~~~~~~~~~~ 238 (248)
T 1iru_D 176 YTDEAIETDDLTIKLVIKALLEVVQ-SGGKNIELAVMRRDQ-SLKILNPEEIEKYVAEIEKEKEE 238 (248)
T ss_dssp CCSSTTCSHHHHHHHHHHHHHTTSC-TTSTTCCEEEEESSS-CEECCCHHHHHHHTTTTTTTTTT
T ss_pred hcccccCCHHHHHHHHHHHHHHHHc-CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHHhcchh
Confidence 34577 88884433 333334 356678999999988 79999999999998876555443
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=33.81 E-value=49 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred eehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 80 LHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 80 l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+.+|. +|......++++.+..+|-.++....+.+.++
T Consensus 7 i~vk~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~ 43 (77)
T 2bwf_A 7 IHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVAN 43 (77)
T ss_dssp EEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEEEE--CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHH
Confidence 34444 78888889999999999999999999887553
No 30
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.59 E-value=45 Score=23.75 Aligned_cols=41 Identities=5% Similarity=0.026 Sum_probs=35.9
Q ss_pred ceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCce
Q psy5165 79 TLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQV 119 (169)
Q Consensus 79 ~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~ 119 (169)
++..+..++|..+...++++-+.++|-.++.+..+...+|.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Q 49 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKM 49 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHe
Confidence 55667778999999999999999999999999999987764
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=32.32 E-value=1.1e+02 Score=20.28 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=29.0
Q ss_pred ccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 86 IFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 86 y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
.+|......++++.+.++|-.++.+..+++.++
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 50 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSK 50 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHH
Confidence 467888889999999999999999999988664
No 32
>2byo_A Lipoprotein LPPX; lipid transport, palmitate; HET: HXA LNL; 2.15A {Mycobacterium tuberculosis} SCOP: b.125.1.3
Probab=30.70 E-value=19 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=24.0
Q ss_pred EEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccC
Q psy5165 92 ITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLIS 135 (169)
Q Consensus 92 itsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTIS 135 (169)
++++.-.++.+.+-. +-. ..+....+|+ |||+||+|..+-
T Consensus 144 t~~~tGtv~~~~~~~-l~~--~~~~~~~~tl-WV~~eG~~~l~r 183 (207)
T 2byo_A 144 TTKITGTIPASSVKM-LDP--GAKSARPATV-WIAQDGSHHLVR 183 (207)
T ss_dssp EEEEEEEECHHHHHH-HCT--TCCSCEEEEE-EEESSSSCCEEE
T ss_pred EEEEEeecCHHHHhh-hcc--cccCCcceEE-EEccCCCCceEE
Confidence 355555566665532 211 3333346788 999999998754
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.72 E-value=74 Score=20.41 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=28.1
Q ss_pred cceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 87 FSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 87 ~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+|..+...++++.+.++|-.++.+..+++.++
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~ 47 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ 47 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTT
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHH
Confidence 57788889999999999999999999888664
No 34
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=29.25 E-value=55 Score=22.30 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=44.3
Q ss_pred cceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcEEEeee
Q psy5165 87 FSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIHGK 160 (169)
Q Consensus 87 ~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSELlIHvf 160 (169)
++.+.-..++++.+.++|=.++.+.++.+.+|.- +-+.|.+|..+. .+ |++.--|...|=..+..||+-
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~Qr-Li~~~~~~~~~g--~~--l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQ-LQLIDDRGITIE--KN--MANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEE-EEEECTTSCEEE--SS--CCTTSBGGGGTCCTTCEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEE-EEEecCCCCcee--eE--cCCCCCHHHCCCCCCCEEEEE
Confidence 3445557799999999999999999999988653 335566554432 22 233333444444455566653
No 35
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.16 E-value=71 Score=21.18 Aligned_cols=40 Identities=5% Similarity=0.170 Sum_probs=31.2
Q ss_pred ceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 79 TLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 79 ~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
++++.+...|..+...++++.+..+|-+++.+..++..++
T Consensus 17 ~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~ 56 (96)
T 1wx8_A 17 IIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADR 56 (96)
T ss_dssp EEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTT
T ss_pred cEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 3444333338888889999999999999999999887654
No 36
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=27.08 E-value=70 Score=23.79 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=46.1
Q ss_pred eeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcEEEeee
Q psy5165 89 EVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIHGK 160 (169)
Q Consensus 89 Dimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSELlIHvf 160 (169)
.++...|+++..-.+|.+-.+.- .-|+++|||+.---...+.-....+|++. ++|++...|+..
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~f------ggv~I~WidDTsAlvvf~~~~~a~~al~~--i~k~~~y~i~ty 80 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAF------GNIQISWIDDTSAFVSLSQPEQVQIAVNT--SKYAESYRIQTY 80 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTT------CSCCCEEEETTEEEEECSCHHHHHHHHHH--HHHCCSSEEEEH
T ss_pred eEEEEeCChhhhhHHHHHHhhcc------CCEEEEEEcCCeEEEEecCHHHHHHHHHh--cccCCceEEEEh
Confidence 45556899999888877665433 26889999998888888887788888775 335565556543
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.24 E-value=64 Score=20.40 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=28.9
Q ss_pred ccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 86 IFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 86 y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
.+|......++++.+..+|-+++.....++.++
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~ 43 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQ 43 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 467888889999999999999999999988764
No 38
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=26.01 E-value=38 Score=31.61 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=28.3
Q ss_pred eehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCC
Q psy5165 80 LHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEP 153 (169)
Q Consensus 80 l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDS 153 (169)
..++.+-.|-+=+ +..+++.|+-.++++.+=++.+. +| -||.|++|+.-+.||+.|.+-.+-+
T Consensus 108 MAIamAr~GGiGv--IH~n~sie~Qa~~V~~VKr~e~g------~i---~dPvtl~P~~Tv~da~~l~~~~~is 170 (556)
T 4af0_A 108 MAIALALHGGLGI--IHHNCSAEEQAAMVRRVKKYENG------FI---TDPLCLGPDATVGDVLEIKAKFGFC 170 (556)
T ss_dssp HHHHHHHTTCEEE--ECCSSCHHHHHHHHHHHHHCCC-------------------------------------
T ss_pred HHHHHHHCCCeEE--EcCCCCHHHHHHHHHHHHhcccC------cc---CCCeEcCCCCCHHHHHHHHHHhCCC
Confidence 3567777888866 66888999999999999888765 22 2899999999999999997765544
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.54 E-value=58 Score=21.12 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=33.8
Q ss_pred ccccccceehhhhc-cceeEEEecCCCCChhHHHHHHHHhhccCCCce
Q psy5165 73 FLHISFTLHCYFII-FSEVFITYIKPDITYDRLQEEVKEMCKFSTDQV 119 (169)
Q Consensus 73 ~~~~t~~l~~k~~y-~GDimitsle~sIsfE~LC~evRd~C~f~nkQ~ 119 (169)
+...+.++++.... +|......++++.+..+|-.++.+..+++.++.
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 11 AVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp ----CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred eecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 33444445554444 688888899999999999999999999887643
No 40
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=25.02 E-value=87 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=27.9
Q ss_pred eehhhhccceeEEEecC-CCCChhHHHHHHHHhhccCCCc
Q psy5165 80 LHCYFIIFSEVFITYIK-PDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 80 l~~k~~y~GDimitsle-~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+++| .-+|.. +..++ ++.++.+|..++.+.+..+..|
T Consensus 10 irvr-s~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 10 LRVR-SRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp EEEE-CSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred EEEE-CCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 3444 345655 56788 9999999999999999987553
No 41
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=23.67 E-value=78 Score=24.60 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCCCChhHHH----HHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhh
Q psy5165 96 KPDITYDRLQ----EEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 148 (169)
Q Consensus 96 e~sIsfE~LC----~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLye 148 (169)
.++++.|+.. ..++.... .++..+.+.+|+.+| +..+-+..|+++.+.-.+
T Consensus 181 ~~~ms~eea~~l~~~al~~~~~-~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 181 EPPATVEECVKLTVRSLLEVVQ-TGAKNIEITVVKPDS-DIVALSSEEINQYVTQIE 235 (241)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHC-SCSTTEEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHhc-CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHh
Confidence 4678888853 33444444 456678999999887 788999999999887553
No 42
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.45 E-value=89 Score=21.04 Aligned_cols=40 Identities=3% Similarity=-0.049 Sum_probs=30.4
Q ss_pred eehhhhccce--eEEEecCCCCChhHHHHHHHHhhccCCCce
Q psy5165 80 LHCYFIIFSE--VFITYIKPDITYDRLQEEVKEMCKFSTDQV 119 (169)
Q Consensus 80 l~~k~~y~GD--imitsle~sIsfE~LC~evRd~C~f~nkQ~ 119 (169)
+.+.+..++. .....++++.+.++|-.++.+.++.+.+|.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~q 49 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCM 49 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHe
Confidence 3334444444 567789999999999999999999987653
No 43
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=23.25 E-value=73 Score=23.00 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=40.2
Q ss_pred eEEEecCCCCChhHHHHHHHHhhccCCCce-eeeeeeeccCCccccCcHHHHHHHHhh
Q psy5165 90 VFITYIKPDITYDRLQEEVKEMCKFSTDQV-FTVKWVDEEGDPCLISTQMELEEAIRL 146 (169)
Q Consensus 90 imitsle~sIsfE~LC~evRd~C~f~nkQ~-FT~KWVDEEGDPCTISSQlELeEAiRL 146 (169)
.+...++++.++++|.+.+.+-=.|.-+.| +|.- ++-+|...-+.+--.||||-|-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~-~~~~~k~LYmq~pp~Lee~Tr~ 62 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT-LEGKNRTLYMQSVTSIEERTRP 62 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEE-ETTEEEEEECSSCHHHHHHHHH
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeee-cCCCCCeEEEeCcHHHHHHhHh
Confidence 344678999999999999988555554555 4443 6777888667655788898874
No 44
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=23.23 E-value=37 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCCceeeeeeeeccCCccc
Q psy5165 115 STDQVFTVKWVDEEGDPCL 133 (169)
Q Consensus 115 ~nkQ~FT~KWVDEEGDPCT 133 (169)
.++++.|+++||++|...-
T Consensus 3 ~~~~~VtV~YvDe~Gn~Ia 21 (102)
T 2kt7_A 3 TNNFTVKVEYVDADGAEIA 21 (102)
T ss_dssp STTCCEEEEEEETTSSEEE
T ss_pred CCCCEEEEEEEcCCCCCCC
Confidence 3567899999999986543
No 45
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=22.23 E-value=1.6e+02 Score=24.64 Aligned_cols=58 Identities=5% Similarity=0.063 Sum_probs=45.7
Q ss_pred eEEEecCCCCChhHHHHHHHHhhccCCCceeeeeeeec-cCCccccCcHHHHHHHHhhh
Q psy5165 90 VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDE-EGDPCLISTQMELEEAIRLY 147 (169)
Q Consensus 90 imitsle~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDE-EGDPCTISSQlELeEAiRLy 147 (169)
.....++.+.+.+++|+++-.-+++.+.+.|-+-..+. +|+..=+.+..-+.+...-+
T Consensus 23 ~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~ 81 (375)
T 2al6_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKF 81 (375)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhhh
Confidence 88899999999999999999999999888998876664 56666666665555544333
No 46
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.45 E-value=93 Score=19.53 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=27.8
Q ss_pred cceeEEEecCCCCChhHHHHHHHHhhccCCC
Q psy5165 87 FSEVFITYIKPDITYDRLQEEVKEMCKFSTD 117 (169)
Q Consensus 87 ~GDimitsle~sIsfE~LC~evRd~C~f~nk 117 (169)
+|..+...++++.+..+|-+++.....++.+
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~ 42 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPD 42 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChH
Confidence 6788888999999999999999999998865
No 47
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=21.14 E-value=2.3e+02 Score=24.39 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhh--cCCCCcEEEee
Q psy5165 101 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE--VNHEPELVIHG 159 (169)
Q Consensus 101 fE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLye--LnKDSELlIHv 159 (169)
.+.+.+-+++.+.|...+...+ .|++.+|....+..++.+|++-.- .+.+..+++|-
T Consensus 77 A~~m~~~L~~~~Gf~~~~I~lL--td~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~llfYF 135 (350)
T 4f6o_A 77 AHNIFNFLTNGYGYSSDDIVIL--TDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHY 135 (350)
T ss_dssp HHHHHHHHHHHSCCCGGGEEEE--ETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCccceeee--cccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4456677777788887665444 788889988888899999998643 34566677764
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.96 E-value=1e+02 Score=21.03 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=27.1
Q ss_pred ceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 88 SEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 88 GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
|......++++.+.++|-.++...+++..++
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 51 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEE 51 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHH
Confidence 3688888999999999999999999988654
No 49
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=20.72 E-value=82 Score=20.46 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=28.4
Q ss_pred cceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 87 FSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 87 ~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
+|..+...++++.+..+|-.++.+.+++..++
T Consensus 14 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 45 (90)
T 4dwf_A 14 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK 45 (90)
T ss_dssp TCCEEEEEEETTCBHHHHHHHHHHHHTCCGGG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 67888889999999999999999999988664
No 50
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=20.68 E-value=1e+02 Score=21.65 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=33.9
Q ss_pred ccccceehhhhccceeEEEecCCCCChhHHHHHHHHhhccCCCc
Q psy5165 75 HISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 118 (169)
Q Consensus 75 ~~t~~l~~k~~y~GDimitsle~sIsfE~LC~evRd~C~f~nkQ 118 (169)
++.+.+.+|. .+|......++++.+.++|-+++.+..+++.++
T Consensus 7 ~~~~~i~vk~-l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 49 (114)
T 2kdi_A 7 HGEFQIFAKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 49 (114)
T ss_dssp CCCCEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCcEEEEEEe-CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 3445555554 567888889999999999999999999987654
No 51
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=20.24 E-value=1.1e+02 Score=22.06 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCChhHHHHHHHHhhccCCCceeeeeeeeccCCccccCcHHHHHHHHhhhhcCCCCcEEE
Q psy5165 96 KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVI 157 (169)
Q Consensus 96 e~sIsfE~LC~evRd~C~f~nkQ~FT~KWVDEEGDPCTISSQlELeEAiRLyeLnKDSELlI 157 (169)
+..|+|++++.-+.......+. .+|.+..+....-+...++.+|++.+-.+++-.|..
T Consensus 75 ~g~i~~~EF~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~ 132 (208)
T 2ct9_A 75 EDQVNFRGFMRTLAHFRPIEDN----EKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISR 132 (208)
T ss_dssp CSCEEHHHHHHHHHTTSCCC---------------CCTTSHHHHHHHHHHHHCTTCSSEECH
T ss_pred CCcCcHHHHHHHHHhhccccch----hhhcccccccccccHHHHHHHHHHHHCCCCCCEEcH
Confidence 4568999999887666544322 246655444434456778899999998888776543
Done!