RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5165
(169 letters)
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 119 bits (299), Expect = 2e-36
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 88 SEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 147
++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA RLY
Sbjct: 10 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 69
Query: 148 EVNHEPELVIH 158
E+N + EL+IH
Sbjct: 70 ELNKDSELLIH 80
Score = 39.4 bits (92), Expect = 2e-05
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 1 MELEEAIRLYEVNHEPELVIH 21
+ELEEA RLYE+N + EL+IH
Sbjct: 60 LELEEAFRLYELNKDSELLIH 80
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1
(KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 45.6 bits (108), Expect = 8e-08
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 98 DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 147
+ T+ ++ VK +T +K++DEE + I++Q E EEA+++
Sbjct: 25 NTTWADIEAMVKVSFDLNT---IQIKYLDEENEEVSINSQGEYEEALKMA 71
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 45.1 bits (107), Expect = 1e-07
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 89 EVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 145
++F +K D TY L+ ++ + TD F ++ +G I T ++ I+
Sbjct: 22 DIFALMLKGDTTYKELRSKIAP--RIDTDN-FKLQTKLFDGSGEEIKTDSQVSNIIQ 75
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 77
Score = 27.9 bits (62), Expect = 0.16
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 88 SEVFITYIKPDITYDRLQEEVKEMCKFSTDQ----VFTVKWVDEEGDPCLISTQMELEEA 143
SE+F ++ +D L + + + + +K+ DE+GD ++ + + A
Sbjct: 1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVA 60
Query: 144 IRLYEVNHEPELVI 157
+ N+E L I
Sbjct: 61 KEMLAENNEKFLNI 74
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Length = 105
Score = 26.4 bits (58), Expect = 0.92
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 60 HRELVRKKRSYCKFLHISFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCK--FSTD 117
++ L++ + F+ S I D+ + D
Sbjct: 10 NQLLIQHPSATY-FVKASGDSMIDGGISDG--------DLLIVDSAITASHGDIVIAAVD 60
Query: 118 QVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIHGKSTYLI 165
FTVK + LI + A ++ E L + G +++
Sbjct: 61 GEFTVKKLQLRPTVQLIP----MNSAYSPITISSEDTLDVFGVVIHVV 104
>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 188
Score = 26.8 bits (59), Expect = 1.1
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 115 STDQVFTVKWVDEEGDPCLISTQMELEEA---IRLYEVNHEP 153
+ + TV W+ ++G L+ ++L + + N EP
Sbjct: 145 KSARPATV-WIAQDGSHHLVRASIDLGSGSIQLTQSKWN-EP 184
>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom
(Aleuria aurantia) [TaxId: 5188]}
Length = 312
Score = 26.9 bits (59), Expect = 1.2
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 21 HGNLWTWQWWN-KFWRTWAPVPT 42
+L WQW + K W A VPT
Sbjct: 284 GVSLQQWQWISGKGWSIGAVVPT 306
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein
LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Length = 118
Score = 25.1 bits (55), Expect = 2.5
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
Query: 84 FIIFSEVFITYIKPDI---------TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPC 132
I ++ ++ +D + ++ S + F + V ++ D
Sbjct: 2 KITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYK 59
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 394
Score = 25.6 bits (55), Expect = 3.4
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 2 ELEEAIRLYEVNHEPELVIHGNLWTWQWWNKFWR 35
+ ++R + ++IH + +WN F
Sbjct: 203 DGYNSLR--QTGSVTPVIIHDAFQVFGYWNNFLT 234
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
thomasiana) [TaxId: 29165]}
Length = 307
Score = 25.6 bits (55), Expect = 3.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 8 RLYEVNHEPELVIHGNLWTWQWWNKFWRTWAPVPTLFGITIF 49
RLY V E L HG++ +W+ +P F I+
Sbjct: 74 RLYTVQFEDALRRHGSVVGIPYWD-TVVPQEDLPAFFNDEIW 114
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 99
Score = 24.5 bits (53), Expect = 3.7
Identities = 13/54 (24%), Positives = 18/54 (33%)
Query: 104 LQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVI 157
++E EM V GD + +ELEE I L V+
Sbjct: 6 VKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL 59
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 25.0 bits (54), Expect = 5.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 123 KWVDEEGDPCLISTQME--LEEAIRLYEVNHEPELVIH 158
V +G ++ E +EEA+RL E E++
Sbjct: 24 TGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAV 61
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga
maritima [TaxId: 2336]}
Length = 110
Score = 23.6 bits (51), Expect = 9.4
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 61 RELVRKKRSYC-KFLHI--SFTLHCYFIIFSEVFITYIKPDITYDRLQEEVKEMCKFSTD 117
R+L+ K+ C I + + E + + L EE++++ + T
Sbjct: 26 RKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHPYETP 85
Query: 118 QVFTV----------KWVDEE 128
+FT+ W+ E
Sbjct: 86 AIFTLKVENILTEYMNWLRES 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.467
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,508
Number of extensions: 34986
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 36
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)