BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5166
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WMH|A Chain A, Crystal Structure Of A Pb1 Domain Complex Of Protein
Kinase C Iota And Par6 Alpha
pdb|1VD2|A Chain A, Solution Structure Of The Pb1 Domain Of Pkciota
Length = 89
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 73 LYELNKDSELLIH 85
>pdb|2OHE|A Chain A, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm 1728
Length = 290
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 19 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQ 55
YDR+Q ++ + D FTV DEEGDP + S+Q
Sbjct: 111 YDRIQ--FSDLVENPVDYYFTV---DEEGDPTVYSSQ 142
>pdb|2OHC|A Chain A, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm1728
pdb|2OHC|B Chain B, Structural And Mutational Analysis Of Trna-Intron Splicing
Endonuclease From Thermoplasma Acidophilum Dsm1728
Length = 289
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 19 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQ 55
YDR+Q ++ + D FTV DEEGDP + S+Q
Sbjct: 110 YDRIQ--FSDLVENPVDYYFTV---DEEGDPTVYSSQ 141
>pdb|2BKF|A Chain A, Structure Of The Pb1 Domain Of Nbr1
Length = 87
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 32 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 72
>pdb|2G4S|A Chain A, Anomalous Substructure Of Nbr1pb1
Length = 86
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 31 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 71
>pdb|1WJ6|A Chain A, Solution Structure Of Rsgi Ruh-024, A Pb1 Domain In
Human Cdna, Kiaa0049
Length = 101
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 40 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 80
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66
P++ Y RL+ E ++C V+ D +G+ + S + L++ R YE
Sbjct: 151 PELFYGRLRNEKSDLC-------LDVEGSDGKGNVLMYSCEDNLDQWFRYYE 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,348,114
Number of Sequences: 62578
Number of extensions: 79790
Number of successful extensions: 219
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 10
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)