BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5166
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90XF2|KPCI_DANRE Protein kinase C iota type OS=Danio rerio GN=prkci PE=2 SV=2
Length = 588
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 58/73 (79%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+Y+ L EV++MC DQ+FT+KW+DEEGDPC +S+Q+ELEEA+R
Sbjct: 25 YRGDIMITHFEPSISYEGLCNEVRDMCSMDNDQLFTMKWIDEEGDPCTVSSQLELEEALR 84
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 85 LYELNKDSELIIH 97
>sp|P41743|KPCI_HUMAN Protein kinase C iota type OS=Homo sapiens GN=PRKCI PE=1 SV=2
Length = 596
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 92 LYELNKDSELLIH 104
>sp|Q5R4K9|KPCI_PONAB Protein kinase C iota type OS=Pongo abelii GN=PRKCI PE=2 SV=2
Length = 596
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 92 LYELNKDSELLIH 104
>sp|F1M7Y5|KPCI_RAT Protein kinase C iota type OS=Rattus norvegicus GN=Prkci PE=1 SV=1
Length = 596
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 57/73 (78%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32 YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 92 LYELNKDSELLIH 104
>sp|Q62074|KPCI_MOUSE Protein kinase C iota type OS=Mus musculus GN=Prkci PE=1 SV=3
Length = 595
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 57/73 (78%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32 YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 92 LYELNKDSELLIH 104
>sp|Q05513|KPCZ_HUMAN Protein kinase C zeta type OS=Homo sapiens GN=PRKCZ PE=1 SV=4
Length = 592
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++FIT + T++ L EEV++MC+ T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDIFITSVDAATTFEELCEEVRDMCRLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81
Query: 64 LYEVNHEPELVIH 76
L + L+IH
Sbjct: 82 LARQCRDEGLIIH 94
>sp|P09217|KPCZ_RAT Protein kinase C zeta type OS=Rattus norvegicus GN=Prkcz PE=1
SV=2
Length = 592
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT + P T+ L EEV++MC T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDILITSVDPTTTFQDLCEEVRDMCGLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81
Query: 64 LYEVNHEPELVIH 76
L + L+IH
Sbjct: 82 LACQGRDEVLIIH 94
>sp|Q02956|KPCZ_MOUSE Protein kinase C zeta type OS=Mus musculus GN=Prkcz PE=1 SV=2
Length = 592
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT + T+ L EEV++MC T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDILITSVDAMTTFKDLCEEVRDMCGLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81
Query: 64 LYEVNHEPELVIH 76
L + L+IH
Sbjct: 82 LVCQGRDEVLIIH 94
>sp|O19111|KPCZ_RABIT Protein kinase C zeta type OS=Oryctolagus cuniculus GN=PRKCZ PE=2
SV=1
Length = 591
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+S ++FIT + T++ L EEV++MC T+KWVD EGDP +S+QMEL EA R
Sbjct: 22 YSGDIFITSVDAATTFEELCEEVRDMCGLHQHHPLTLKWVDSEGDPRTVSSQMELGEAFR 81
Query: 64 LYEVNHEPELVIH 76
L + + L++H
Sbjct: 82 LAGQHRDDGLILH 94
>sp|A8WUG4|KPC3_CAEBR Protein kinase C-like 3 OS=Caenorhabditis briggsae GN=pkc-3 PE=3
SV=1
Length = 597
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
F +V + Y +P + D +++ CK Q TVKW+DE+GDP I +QMEL+EA+R
Sbjct: 19 FHGQVVVLYARPPLILDDFFALLRDACKQHAKQDITVKWIDEDGDPISIDSQMELDEAVR 78
Query: 64 LYEVNHEPELVIH 76
V+ E EL IH
Sbjct: 79 CLNVSQEAELNIH 91
>sp|Q19266|KPC3_CAEEL Protein kinase C-like 3 OS=Caenorhabditis elegans GN=pkc-3 PE=1
SV=1
Length = 597
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
F +V + Y +P + D +K+ CK Q TVKW+DE+GDP I +QMEL+EA+R
Sbjct: 19 FQGQVVVLYARPPLILDDFFALLKDACKQHKKQDITVKWIDEDGDPISIDSQMELDEAVR 78
Query: 64 LYEVNHEPELVIH 76
+ E EL IH
Sbjct: 79 CLNSSQEAELNIH 91
>sp|Q10S83|NLP1_ORYSJ Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1
Length = 942
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAI 62
++ +E I ++P + RL+EE+ + S D +K++D+E + L++ +L E I
Sbjct: 850 IYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDESEWVLLTCDADLLECI 909
Query: 63 RLYE 66
+Y+
Sbjct: 910 DVYK 913
>sp|A1WSZ8|RF3_HALHL Peptide chain release factor 3 OS=Halorhodospira halophila (strain
DSM 244 / SL1) GN=prfC PE=3 SV=1
Length = 517
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 16 DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCL 51
D+ RLQ+E C F QV+T +WV E + L
Sbjct: 435 DVAAYRLQKEYGVECTFEGVQVYTARWVSAEDEKAL 470
>sp|Q5R8D5|TM183_PONAB Transmembrane protein 183 OS=Pongo abelii GN=TMEM183 PE=2 SV=2
Length = 387
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 22 LQEEVKEMCKFSTDQVFTVKWVDEEGDPCLI---STQMELEE 60
+Q+EVK +C QV T + + G+PC I S +ME +E
Sbjct: 63 VQQEVKSLCGLEASQVPTEEALSGAGEPCDIIDSSDEMEAQE 104
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1
Length = 988
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL 73
+V+ M K S D +K++DEE + I++Q E EEA+++ + +L
Sbjct: 30 DVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEYEEALKMANIKQGNQL 79
>sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidioides immitis (strain
RS) GN=SEC31 PE=3 SV=1
Length = 1261
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVF-TVKWVDEE 46
FS+E F+ D+ D+L +E++ + K ST+ F + W + E
Sbjct: 37 FSNETFLELWNLDLDNDKLGQELEPVAKISTESGFHDIAWAESE 80
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1
SV=1
Length = 983
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL 73
+V+ M K S D +K++DEE + I++Q E EEA+++ + +L
Sbjct: 30 DVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEYEEALKMANIKQGNQL 79
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2
SV=1
Length = 919
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFT 39
F D++F + P + D LQE K + K+ T ++ +
Sbjct: 378 FQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILS 413
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3
Length = 966
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 30 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 70
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1
Length = 894
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 EVKEMCKFSTD-QVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 30 DIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,266,026
Number of Sequences: 539616
Number of extensions: 1017577
Number of successful extensions: 2683
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2667
Number of HSP's gapped (non-prelim): 27
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)