Query psy5166
Match_columns 76
No_of_seqs 80 out of 82
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:03:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 100.0 1E-35 3.5E-40 192.2 8.5 75 2-76 11-85 (89)
2 2bkf_A Zinc-finger protein NBR 99.6 2.8E-16 9.5E-21 101.6 6.7 71 2-76 11-83 (87)
3 1wj6_A KIAA0049 protein, RSGI 99.6 8.5E-16 2.9E-20 101.6 5.9 71 2-76 19-91 (101)
4 2kkc_A Sequestosome-1; P62, PB 99.6 3.9E-15 1.3E-19 97.8 6.1 62 5-66 19-91 (102)
5 2ktr_A Sequestosome-1; autopha 99.5 8.1E-15 2.8E-19 98.6 6.4 61 6-66 35-106 (117)
6 1wmh_B Partitioning defective- 99.2 5E-11 1.7E-15 76.6 6.0 63 2-65 11-75 (86)
7 1q1o_A Cell division control p 98.5 2.5E-07 8.6E-12 60.4 6.7 62 6-67 22-87 (98)
8 1pqs_A Cell division control p 98.3 6.1E-07 2.1E-11 56.0 4.7 61 6-66 1-65 (77)
9 1ip9_A BEM1 protein; ubiquitin 97.8 4.9E-05 1.7E-09 48.7 6.1 59 2-63 17-75 (85)
10 2cu1_A Mitogen-activated prote 97.8 7.7E-05 2.6E-09 49.3 7.0 61 3-68 14-74 (103)
11 1oey_J P40-PHOX, neutrophil cy 97.0 0.0016 5.5E-08 43.2 5.9 52 14-68 30-81 (107)
12 2jrh_A Mitogen-activated prote 96.8 0.0067 2.3E-07 39.4 7.4 61 3-68 10-70 (94)
13 1oey_A P67-PHOX, neutrophil cy 96.7 0.0042 1.4E-07 39.1 5.4 62 2-65 10-71 (83)
14 2c60_A Human mitogen-activated 96.6 0.011 3.6E-07 39.4 7.3 61 3-68 37-97 (111)
15 2npt_B Mitogen-activated prote 96.5 0.011 3.8E-07 38.8 6.9 61 3-68 26-86 (100)
16 2npt_A Dual specificity mitoge 96.4 0.015 5E-07 38.4 7.1 50 15-66 35-84 (106)
17 2kvz_A ISPE; structural genomi 75.8 1.7 6E-05 26.9 2.3 21 31-51 2-22 (85)
18 1iru_D 20S proteasome; cell cy 69.3 11 0.00037 26.0 5.4 58 13-71 176-238 (248)
19 3kz5_E Protein SOPB; partition 64.6 5.1 0.00018 23.3 2.5 30 1-30 15-44 (52)
20 1ryp_D 20S proteasome; multica 61.5 13 0.00044 25.4 4.5 51 14-66 181-235 (241)
21 2kd0_A LRR repeats and ubiquit 61.5 15 0.00051 21.4 4.3 34 3-36 18-51 (85)
22 1v86_A DNA segment, CHR 7, way 60.6 15 0.00053 21.8 4.3 34 3-36 23-56 (95)
23 2kt7_A Putative peptidoglycan 59.3 4.9 0.00017 25.7 1.9 19 33-51 3-21 (102)
24 3kxr_A Magnesium transporter, 56.4 20 0.00067 23.7 4.6 61 6-69 57-146 (205)
25 1ryp_E 20S proteasome; multica 55.3 17 0.00059 24.7 4.3 57 13-70 179-240 (242)
26 4b6w_A Tubulin-specific chaper 55.1 13 0.00044 22.2 3.2 43 5-48 13-55 (86)
27 3qij_A Protein 4.1; cytoskelet 53.2 21 0.00073 25.2 4.7 55 4-58 25-79 (296)
28 2i1s_A Hypothetical protein; m 51.3 24 0.00081 23.7 4.4 31 9-39 24-54 (188)
29 1sif_A Ubiquitin; hydrophobic 50.6 24 0.00083 20.4 3.9 33 3-35 16-48 (88)
30 2kk8_A Uncharacterized protein 49.4 25 0.00086 20.4 3.9 33 4-36 18-50 (84)
31 3a9j_A Ubiquitin; protein comp 49.4 28 0.00096 18.6 3.9 32 4-35 8-39 (76)
32 2ct9_A Calcium-binding protein 49.1 23 0.0008 22.4 3.9 55 15-73 76-130 (208)
33 1y8x_B Ubiquitin-activating en 48.8 28 0.00094 21.8 4.2 56 8-64 6-62 (98)
34 1v5t_A 8430435I17RIK protein; 48.5 27 0.00091 20.4 3.9 35 3-37 13-48 (90)
35 1ndd_A NEDD8, protein (ubiquit 48.2 30 0.001 18.5 3.9 33 4-36 8-40 (76)
36 1xg8_A Hypothetical protein SA 48.0 20 0.00068 23.6 3.5 61 3-63 12-74 (111)
37 2al6_A Focal adhesion kinase 1 47.8 43 0.0015 24.4 5.7 53 8-60 23-76 (375)
38 4fbj_B NEDD8; effector-HOST ta 47.7 28 0.00096 20.1 3.9 33 4-36 8-40 (88)
39 3ctr_A Poly(A)-specific ribonu 47.4 16 0.00055 23.5 2.9 52 7-64 7-58 (101)
40 2bwf_A Ubiquitin-like protein 46.9 30 0.001 18.8 3.8 32 5-36 12-43 (77)
41 3dbh_I NEDD8; cell cycle, acti 46.2 32 0.0011 19.2 3.9 33 4-36 20-52 (88)
42 1whv_A Poly(A)-specific ribonu 45.2 35 0.0012 21.9 4.3 52 7-64 17-68 (100)
43 3mtn_B UBA80, ubcep1, ubiquiti 44.8 35 0.0012 18.8 3.9 32 4-35 11-42 (85)
44 3n3k_B Ubiquitin; hydrolase, p 44.0 35 0.0012 18.8 3.8 33 4-36 11-43 (85)
45 3phx_B Ubiquitin-like protein 43.6 37 0.0013 18.7 3.8 33 4-36 12-44 (79)
46 1wh3_A 59 kDa 2'-5'-oligoadeny 43.4 43 0.0015 18.7 4.2 33 4-36 15-47 (87)
47 2hj8_A Interferon-induced 17 k 43.4 39 0.0013 19.4 4.0 32 5-36 13-44 (88)
48 1we7_A SF3A1 protein; structur 43.1 39 0.0013 20.5 4.2 33 4-36 43-75 (115)
49 2dzi_A Ubiquitin-like protein 42.9 41 0.0014 18.4 4.3 32 4-35 15-46 (81)
50 1wjn_A Tubulin-folding protein 41.3 32 0.0011 20.2 3.5 41 4-45 20-60 (97)
51 1wxv_A BAG-family molecular ch 41.0 50 0.0017 18.9 4.4 34 3-36 13-51 (92)
52 1ryp_A 20S proteasome; multica 40.5 68 0.0023 21.7 5.5 48 16-65 187-239 (243)
53 3fio_A A cystathionine beta-sy 40.4 12 0.0004 19.7 1.3 25 49-73 2-26 (70)
54 2kjr_A CG11242; UBL, ubiquitin 39.9 41 0.0014 20.2 3.9 31 7-37 28-58 (95)
55 3ghd_A A cystathionine beta-sy 39.6 11 0.00038 21.3 1.1 26 49-74 2-27 (70)
56 2zyz_A Putative uncharacterize 39.3 65 0.0022 20.6 4.9 38 9-48 59-96 (116)
57 2pjh_A Protein NPL4, nuclear p 38.2 25 0.00084 20.6 2.6 34 8-42 15-48 (80)
58 1wgg_A Ubiquitin carboxyl-term 38.1 51 0.0017 19.6 4.0 34 3-36 13-47 (96)
59 4dwf_A HLA-B-associated transc 37.9 41 0.0014 19.1 3.5 33 4-36 13-45 (90)
60 2dzm_A FAS-associated factor 1 37.8 50 0.0017 20.3 4.1 35 3-37 15-49 (100)
61 2kdi_A Ubiquitin, vacuolar pro 37.7 45 0.0016 20.4 3.9 33 4-36 17-49 (114)
62 1yar_A Proteasome alpha subuni 37.1 70 0.0024 21.4 5.1 47 13-60 180-231 (233)
63 1ef1_A Moesin; membrane, FERM 36.6 88 0.003 21.4 5.6 44 5-49 10-53 (294)
64 1h8b_A ACT-EF34, alpha-actinin 36.1 25 0.00085 20.4 2.3 15 54-69 8-22 (75)
65 4eew_A Large proline-rich prot 36.0 47 0.0016 18.7 3.5 34 4-37 25-58 (88)
66 1v5o_A 1700011N24RIK protein; 35.7 53 0.0018 19.5 3.9 30 7-36 22-51 (102)
67 1yx5_B Ubiquitin; proteasome, 35.3 57 0.002 18.9 3.9 32 4-35 8-39 (98)
68 3v6c_B Ubiquitin; structural g 34.4 60 0.0021 18.5 3.9 33 4-36 25-57 (91)
69 4hcn_B Polyubiquitin, ubiquiti 34.2 59 0.002 19.0 3.9 33 4-36 30-62 (98)
70 3ajv_A Putative uncharacterize 34.2 72 0.0025 22.3 4.8 40 8-49 139-178 (190)
71 3b08_A Polyubiquitin-C, ubiqui 34.1 56 0.0019 19.8 3.9 33 4-36 8-40 (152)
72 1toh_A Tyroh, tyrosine hydroxy 33.7 25 0.00086 26.9 2.5 30 18-53 282-311 (343)
73 2bps_A YUKD protein; ubiquitin 33.5 49 0.0017 20.0 3.4 48 2-50 12-59 (81)
74 1iru_B 20S proteasome; cell cy 33.2 1E+02 0.0035 20.6 5.4 49 13-63 177-230 (233)
75 3h4p_A Proteasome subunit alph 33.2 37 0.0013 23.8 3.2 58 13-70 184-245 (264)
76 3m62_B UV excision repair prot 33.0 51 0.0018 19.8 3.5 33 4-36 9-41 (106)
77 1we6_A Splicing factor, putati 32.9 71 0.0024 19.1 4.2 32 5-36 39-71 (111)
78 2kj6_A Tubulin folding cofacto 32.2 71 0.0024 19.3 4.1 30 8-37 28-57 (97)
79 3k9o_B Ubiquitin, UBB+1; E2-25 32.0 70 0.0024 18.2 3.9 33 4-36 9-41 (96)
80 1wf9_A NPL4 family protein; be 31.9 71 0.0024 19.2 4.0 31 5-36 16-47 (107)
81 1wx8_A Riken cDNA 4931431F19; 30.6 80 0.0027 18.1 4.0 31 6-36 26-56 (96)
82 2gjh_A Designed protein; oblig 30.2 8.9 0.0003 22.6 -0.4 18 37-57 34-51 (62)
83 2l7r_A Ubiquitin-like protein 29.7 72 0.0025 18.5 3.7 31 6-36 27-57 (93)
84 1j2q_H Proteasome beta subunit 29.5 1.2E+02 0.004 19.7 6.0 50 13-64 144-199 (202)
85 3fdr_A Tudor and KH domain-con 29.4 25 0.00086 20.7 1.6 34 15-52 3-36 (94)
86 4af0_A Inosine-5'-monophosphat 29.4 31 0.001 28.0 2.5 51 13-72 121-171 (556)
87 3bal_A Acetylacetone-cleaving 29.3 33 0.0011 23.0 2.3 24 40-63 123-146 (153)
88 2gw6_A TRNA-splicing endonucle 29.3 71 0.0024 20.5 3.9 40 8-47 71-114 (123)
89 2uyz_B Small ubiquitin-related 29.2 70 0.0024 17.5 3.4 33 4-36 11-43 (79)
90 1j2p_A Alpha-ring, proteasome 28.9 1.4E+02 0.0046 20.3 6.0 53 13-65 179-236 (246)
91 2byo_A Lipoprotein LPPX; lipid 28.7 17 0.00059 25.0 0.8 41 9-53 143-183 (207)
92 1eh2_A EPS15; calcium binding, 28.6 29 0.00099 21.0 1.8 19 47-65 4-24 (106)
93 1u9d_A Hypothetical protein VC 28.5 40 0.0014 21.9 2.5 24 20-44 34-57 (122)
94 3u30_A Ubiquitin, linear DI-ub 28.5 71 0.0024 20.4 3.8 33 4-36 28-60 (172)
95 3m4a_A Putative type I topoiso 28.5 74 0.0025 24.2 4.4 41 20-63 186-227 (346)
96 1j8u_A Phenylalanine-4-hydroxy 28.5 34 0.0012 26.0 2.5 30 18-53 289-318 (325)
97 1phz_A Protein (phenylalanine 27.8 39 0.0013 26.4 2.8 30 18-53 391-420 (429)
98 1iru_G 20S proteasome; cell cy 27.8 1E+02 0.0035 21.1 4.7 53 15-67 182-241 (254)
99 4esy_A CBS domain containing m 27.5 32 0.0011 21.2 1.9 26 48-73 114-139 (170)
100 2klc_A Ubiquilin-1; ubiquitin- 27.4 85 0.0029 18.6 3.8 31 6-36 34-64 (101)
101 1ttn_A DC-UBP, dendritic cell- 26.4 86 0.0029 18.6 3.7 33 4-36 31-63 (106)
102 3rt3_B Ubiquitin-like protein 26.2 93 0.0032 19.3 4.0 33 4-36 10-42 (159)
103 1v6e_A Cytoskeleton-associated 26.0 1E+02 0.0035 17.9 4.1 30 8-37 20-49 (95)
104 1uel_A HHR23B, UV excision rep 25.8 1E+02 0.0035 17.8 4.4 32 4-35 8-42 (95)
105 1iru_A 20S proteasome; cell cy 25.6 1.3E+02 0.0044 20.3 4.9 50 16-65 188-242 (246)
106 3a4u_B Multiple coagulation fa 25.5 47 0.0016 20.4 2.4 22 52-73 64-85 (143)
107 2faz_A Ubiquitin-like containi 25.3 89 0.003 16.9 3.6 32 5-36 11-44 (78)
108 1j8c_A Ubiquitin-like protein 25.1 1.2E+02 0.0042 18.8 4.4 31 6-36 41-71 (125)
109 3ivf_A Talin-1; FERM domain, c 24.9 1.1E+02 0.0036 22.0 4.5 42 4-45 93-134 (371)
110 3vdz_A Ubiquitin-40S ribosomal 24.7 1E+02 0.0035 18.5 3.9 33 4-36 43-75 (111)
111 4gqw_A CBS domain-containing p 24.4 41 0.0014 19.7 1.9 27 47-73 15-41 (152)
112 1wy8_A NP95-like ring finger p 24.1 1E+02 0.0035 17.2 4.2 32 5-36 16-49 (89)
113 1yar_H Proteasome beta subunit 24.0 1.6E+02 0.0055 19.5 5.5 54 13-67 150-209 (217)
114 1t0y_A Tubulin folding cofacto 23.8 1.1E+02 0.0036 18.9 3.8 30 8-37 19-48 (122)
115 2ojr_A Ubiquitin; lanthide-bin 23.8 1.2E+02 0.0042 18.1 4.3 32 5-36 44-75 (111)
116 1wyw_B Ubiquitin-like protein 23.6 1E+02 0.0035 18.0 3.6 33 4-36 29-61 (97)
117 2yvy_A MGTE, Mg2+ transporter 23.6 1.1E+02 0.0037 20.8 4.1 63 6-69 138-229 (278)
118 3h4p_a Proteasome subunit beta 23.3 1.6E+02 0.0054 19.6 4.9 55 13-69 146-206 (219)
119 2v1o_A Cytosolic acyl coenzyme 23.1 68 0.0023 19.4 2.8 31 37-67 105-142 (151)
120 2rc3_A CBS domain; in SITU pro 22.6 33 0.0011 20.0 1.2 24 48-71 83-106 (135)
121 1ryp_L 20S proteasome; multica 22.5 76 0.0026 20.9 3.1 51 13-65 144-200 (212)
122 1r0v_A ENDA, tRNA-intron endon 22.5 68 0.0023 23.6 3.1 36 8-49 93-128 (305)
123 2kan_A Uncharacterized protein 22.4 1.3E+02 0.0043 17.6 4.3 29 8-36 26-54 (94)
124 2wyq_A HHR23A, UV excision rep 22.2 1.1E+02 0.0037 16.8 3.9 31 5-35 14-47 (85)
125 4f6o_A Metacaspase-1; rossmann 22.2 2.2E+02 0.0077 21.2 6.0 55 20-76 78-134 (350)
126 1wju_A NEDD8 ultimate buster-1 22.0 1.2E+02 0.004 18.8 3.7 32 6-37 29-60 (100)
127 3hf7_A Uncharacterized CBS-dom 21.9 27 0.00092 20.7 0.7 22 48-69 78-99 (130)
128 3k6q_A Putative ligand binding 21.8 51 0.0017 22.3 2.1 24 26-53 44-67 (139)
129 1iru_E 20S proteasome; cell cy 21.7 1.9E+02 0.0064 19.4 5.4 50 13-63 185-239 (241)
130 2kic_A Nitrogenase gamma subun 21.6 37 0.0013 21.8 1.3 22 44-66 65-86 (98)
131 3m63_B Ubiquitin domain-contai 21.5 70 0.0024 19.1 2.6 32 5-36 36-67 (101)
132 3plu_A Ubiquitin-like modifier 21.1 1.6E+02 0.0053 18.2 5.6 39 4-42 29-67 (93)
133 3kpb_A Uncharacterized protein 20.4 33 0.0011 19.5 0.8 26 48-73 10-35 (122)
134 2zy9_A Mg2+ transporter MGTE; 20.3 1.6E+02 0.0055 22.1 4.9 63 6-69 158-249 (473)
135 2o16_A Acetoin utilization pro 20.2 48 0.0016 20.2 1.6 24 48-71 87-110 (160)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=100.00 E-value=1e-35 Score=192.16 Aligned_cols=75 Identities=51% Similarity=1.043 Sum_probs=74.0
Q ss_pred ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166 2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH 76 (76)
Q Consensus 2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH 76 (76)
++|+||+++++++++++|++||+|+|++|++..+|+||+||+||||||||||||+||+||+|||++|++++|+||
T Consensus 11 ~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ih 85 (89)
T 1vd2_A 11 AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIH 85 (89)
T ss_dssp EESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEE
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.65 E-value=2.8e-16 Score=101.58 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=62.0
Q ss_pred ccccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166 2 YLFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH 76 (76)
Q Consensus 2 ~~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH 76 (76)
+.|+|+..++.+.- .+++++|...++..|+|. .|.+||.|||||+|+|+||.|++||+|++ .++...|.+|
T Consensus 11 V~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva-~k~~n~L~m~ 83 (87)
T 2bkf_A 11 VTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMA-VKQGNQLQMQ 83 (87)
T ss_dssp EEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHH-HHTTTEEEEE
T ss_pred EEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHh-ccCCCEEEEE
Confidence 47999999976644 999999999999999998 68999999999999999999999999955 4555567664
No 3
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.61 E-value=8.5e-16 Score=101.62 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=61.4
Q ss_pred ccccCceEEEec--CCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166 2 YLFSDEVFITYI--KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH 76 (76)
Q Consensus 2 ~~~~gdi~~~~~--~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH 76 (76)
+.|+|++.++.+ ...+++++|...++..|+|. .|.+||.|||||+|+|+||.|++||+|++. |+..+|.+|
T Consensus 19 V~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~-k~~n~L~m~ 91 (101)
T 1wj6_A 19 VTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAV-KQGNQLQMQ 91 (101)
T ss_dssp EEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHH-HHTSEEEEE
T ss_pred EEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhc-cCCCEEEEE
Confidence 479999999666 45999999999999999998 679999999999999999999999999654 444556654
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.57 E-value=3.9e-15 Score=97.76 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=55.6
Q ss_pred cCceEEEecCCC-----------CChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166 5 SDEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 5 ~gdi~~~~~~~~-----------i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e 66 (76)
+++|++++++.+ .+|+.|+++++++|..-.+..|++||.|||||++|||++.||.+|+....
T Consensus 19 ~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 19 AREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp EEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 479999999743 48999999999999877777899999999999999999999999998654
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.55 E-value=8.1e-15 Score=98.56 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=54.5
Q ss_pred CceEEEecCCC-----------CChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166 6 DEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 6 gdi~~~~~~~~-----------i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e 66 (76)
++|++++++.+ .+|+.|+++++++|..-.+..|++||.|||||++||||+.||.+|+....
T Consensus 35 ~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 35 REIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp EEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 69999999743 49999999999999666666899999999999999999999999998653
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.17 E-value=5e-11 Score=76.59 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=57.2
Q ss_pred ccccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 2 YLFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 2 ~~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
..|.++++++++++ +.+|++|+..++.++++.+. +|+++|.|++||-++||++.+|.+|+...
T Consensus 11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~-~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGL-DVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTC-CCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCC-CEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 46899999999984 48999999999999998655 89999999999999999999999998754
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=98.53 E-value=2.5e-07 Score=60.41 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=54.2
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCC-CC---CeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFS-TD---QVFTVKWVDEEGDPCLISTQMELEEAIRLYEV 67 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~-~~---q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el 67 (76)
+|+++..+.++++|.+|++++++-.++. ++ ..+.+|+-||+||-+|+.||..|+-|+.-..=
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~~e 87 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAE 87 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHHh
Confidence 8899999999999999999999988874 22 23799999999999999999999999986543
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.34 E-value=6.1e-07 Score=56.01 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=53.1
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCC-C---CCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFS-T---DQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~-~---~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e 66 (76)
.|+++..++++++|.+|.+++++-.+.. + ...+.+|+-||+||-+|+.+|..|+-|+.-..
T Consensus 1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 4788899999999999999999988853 1 24589999999999999999999999997653
No 9
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=97.83 E-value=4.9e-05 Score=48.71 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=51.7
Q ss_pred ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166 2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63 (76)
Q Consensus 2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R 63 (76)
..|++|++..-++++|+|.+||+|+++=...++..+|.-+- |..|+ .|.|+.+|+-|+.
T Consensus 17 ~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykd-e~~g~--~i~sD~dl~~aiq 75 (85)
T 1ip9_A 17 FYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLF-DGSGE--EIKTDSQVSNIIQ 75 (85)
T ss_dssp ECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCS-SSCCS--CCCSHHHHHHHHH
T ss_pred EEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecC-CCCCC--cccCHHHHHHHHH
Confidence 36999999999999999999999999999998777776663 55888 8899999999974
No 10
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.81 E-value=7.7e-05 Score=49.32 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=53.5
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 68 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln 68 (76)
-|+|.-+|..++.+++|++|..|+.++|+. ..++.+.+-| =-+.+-+|.+|+.|+-++..+
T Consensus 14 E~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq----~ldL~y~n~E-llIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 14 EHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EETTEEEEEEEESSCCHHHHHHHHHHHHSS----CEEEEECSSS-SCEECCSHHHHHHHHHHHHHC
T ss_pred EecCeEEEEeccCCccHHHHHHHHHHHhCC----eeeEEEecce-EEEeccCHHHHHHHHHHHccC
Confidence 489999999999999999999999999976 5788898654 456677999999999998766
No 11
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.03 E-value=0.0016 Score=43.21 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166 14 KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 68 (76)
Q Consensus 14 ~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln 68 (76)
....+|.+|..-||..+.-. -+++++.|.|||-++|.++.+++=|++-....
T Consensus 30 ~~~P~ykdLl~lmr~~F~~~---DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~ 81 (107)
T 1oey_J 30 SSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLVRLLSDEDVALMVRQARGL 81 (107)
T ss_dssp TCCCCHHHHHHHHHHHHCCS---SEEEEEECTTSCEEECCSHHHHHHHHHHCCCC
T ss_pred ccCCCHHHHHHHHHHHhccc---ceeeeeecCCCCEEEEcchHHHHHHHHHhhcC
Confidence 34558999999999999843 68999999999999999999999888766543
No 12
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=96.82 E-value=0.0067 Score=39.42 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=51.7
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 68 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln 68 (76)
-|+|.-+|.-+..++.|++|.+++.+.|+. +..+.|...| =-+-+-+|.+|+-|+-|...+
T Consensus 10 E~~gEKRIi~f~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs 70 (94)
T 2jrh_A 10 EHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS 70 (94)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHHHHHHCS----SEEEEEECSS-CEEECCSHHHHHHHHHHHHHS
T ss_pred EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-eEEeccCHHHHHHHHHHhccC
Confidence 489999999999999999999999999964 5778887544 455667999999999996654
No 13
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.66 E-value=0.0042 Score=39.11 Aligned_cols=62 Identities=6% Similarity=0.193 Sum_probs=51.2
Q ss_pred ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
.+|. +.......+.++|.+|++++++-..+... -.++.|-|+++.-..++++..|++|++..
T Consensus 10 V~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~-~~~LsYk~~~s~~~vi~~d~dl~~aw~~~ 71 (83)
T 1oey_A 10 VHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLE-HTKLSYRPRDSNELVPLSEDSMKDAWGQV 71 (83)
T ss_dssp EESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGG-GCCEEECCTTCSSCEECCTTTHHHHHTTC
T ss_pred EEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcc-eeEEEeeCCCCCCeeccChHHHHHHHHhc
Confidence 3566 77788899999999999999999999744 47888888655555599999999999863
No 14
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=96.59 E-value=0.011 Score=39.43 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=51.1
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 68 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln 68 (76)
-|+|.-+|.-+..++.|++|.+++.+.|+. +..+.+...| =-+-+-+|.+|+-|+-|...+
T Consensus 37 E~~gEKRIiqf~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 37 EHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHHHHHHSS----CCEEEEECSS-CEEECCSHHHHHHHHHHHHHC
T ss_pred EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-EEEecccHHHHHHHHHHhccC
Confidence 489999999999999999999999999964 5678887544 445566999999999997654
No 15
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=96.52 E-value=0.011 Score=38.77 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=51.5
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN 68 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln 68 (76)
-|+|.-+|.-+..++.|++|.+++.+.|+. ...+.|...| =-+-+-.|.+|+-|+-|...+
T Consensus 26 E~~gEkRIi~f~RPv~f~el~~kv~~afGq----~ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 26 EHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHHHHHHTS----CEEEEEEETT-EEEECCCHHHHHHHHHHHHHC
T ss_pred EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-eEEecccHHHHHHHHHHhccC
Confidence 489999999999999999999999999975 5678887544 445567999999999997654
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=96.45 E-value=0.015 Score=38.41 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166 15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e 66 (76)
+.++|-++.+-++++..-.. .....|-||+||-+||-|+.||+-.+..|.
T Consensus 35 ~~L~FrDvL~~I~~vmP~aT--~TAFeYEDE~gDRITVRSDeE~kAMlsyy~ 84 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLPEAT--TTAFEYEDEDGDRITVRSDEEMKAMLSYYY 84 (106)
T ss_dssp -CCCHHHHHHHHHHHSTTSC--CSEEEEECTTSCEEEECSHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCccce--eeeeeeccccCCeeEEcchHHHHHHHHHHH
Confidence 67899999999999976554 345678899999999999999998887653
No 17
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=75.77 E-value=1.7 Score=26.95 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=16.9
Q ss_pred cCCCCCeeeEEeeccCCCccc
Q psy5166 31 KFSTDQVFTVKWVDEEGDPCL 51 (76)
Q Consensus 31 ~~~~~q~fT~kwvDeEGDPct 51 (76)
.|..+++.|+++||++|..+.
T Consensus 2 ~~~k~~~VtV~YvDe~Gn~La 22 (85)
T 2kvz_A 2 DFGKPNQVTVNYLDENNTSIA 22 (85)
T ss_dssp CSSCCCCEEEEEECSSSCEEE
T ss_pred CcccCCeEEEEEECCCCCCCC
Confidence 466788999999999986543
No 18
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=69.34 E-value=11 Score=26.03 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=41.0
Q ss_pred cCCCC--ChHHHHHHHHHhhcC---CCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCC
Q psy5166 13 IKPDI--TYDRLQEEVKEMCKF---STDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEP 71 (76)
Q Consensus 13 ~~~~i--~~e~L~~e~rd~c~~---~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkds 71 (76)
..+.+ +.++...-++....- .++..+.+.||+.+| ++.+-+..|+++.+.-..-.+..
T Consensus 176 ~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g-~~~~l~~~ei~~~~~~~~~~~~~ 238 (248)
T 1iru_D 176 YTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQ-SLKILNPEEIEKYVAEIEKEKEE 238 (248)
T ss_dssp CCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSS-CEECCCHHHHHHHTTTTTTTTTT
T ss_pred hcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHHhcchh
Confidence 34567 888855444433321 346679999999987 79999999999998876555443
No 19
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=64.58 E-value=5.1 Score=23.29 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=22.9
Q ss_pred CccccCceEEEecCCCCChHHHHHHHHHhh
Q psy5166 1 MYLFSDEVFITYIKPDITYDRLQEEVKEMC 30 (76)
Q Consensus 1 ~~~~~gdi~~~~~~~~i~~e~L~~e~rd~c 30 (76)
+|.|.||.++++++.+=--+++..++..+.
T Consensus 15 ~AkYkGd~Vsf~Ld~~~iP~~~IeKIE~lL 44 (52)
T 3kz5_E 15 TVLYKGDKMVLNLDRSRVPTECIEKIEAIL 44 (52)
T ss_dssp EEEEETTEEEEEEETTTSCHHHHHHHHHHH
T ss_pred eeEecCCeEEEEeccccCCHHHHHHHHHHH
Confidence 478999999999996655567777776543
No 20
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=61.55 E-value=13 Score=25.40 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=37.7
Q ss_pred CCCCChHHHHHH----HHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166 14 KPDITYDRLQEE----VKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 14 ~~~i~~e~L~~e----~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e 66 (76)
.+.++.++...- ++.... .++..+.+.||+.+| +..+-+..|+++.+.-++
T Consensus 181 ~~~ms~eea~~l~~~al~~~~~-~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 181 EPPATVEECVKLTVRSLLEVVQ-TGAKNIEITVVKPDS-DIVALSSEEINQYVTQIE 235 (241)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHC-SCSTTEEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHhc-CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHh
Confidence 467888885443 334444 456689999999876 799999999999887553
No 21
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.52 E-value=15 Score=21.38 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=29.8
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.++|..+...++++.++.+|.+++.+..+++..+
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 51 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRG 51 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTT
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 4678888899999999999999999999987553
No 22
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.59 E-value=15 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=29.9
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.++|..+...++++.++.+|.+++.+..++...+
T Consensus 23 k~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 23 IWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 4678888899999999999999999999988654
No 23
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=59.29 E-value=4.9 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCCCeeeEEeeccCCCccc
Q psy5166 33 STDQVFTVKWVDEEGDPCL 51 (76)
Q Consensus 33 ~~~q~fT~kwvDeEGDPct 51 (76)
.++++.|+++||++|..+-
T Consensus 3 ~~~~~VtV~YvDe~Gn~Ia 21 (102)
T 2kt7_A 3 TNNFTVKVEYVDADGAEIA 21 (102)
T ss_dssp STTCCEEEEEEETTSSEEE
T ss_pred CCCCEEEEEEEcCCCCCCC
Confidence 3567899999999997653
No 24
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=56.43 E-value=20 Score=23.73 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=37.7
Q ss_pred CceEEE---ecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccC--------------------------CCccccCcHH
Q psy5166 6 DEVFIT---YIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEE--------------------------GDPCLISTQM 56 (76)
Q Consensus 6 gdi~~~---~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeE--------------------------GDPctiSsq~ 56 (76)
|++|++ .+.+..++.+..+.+++ . ..+..-.+-.+|++ .+|.+|++..
T Consensus 57 ~~iM~~~~~~v~~~~tv~eal~~~~~--~-~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~~v~~~~ 133 (205)
T 3kxr_A 57 GRYTDHQMLVLSDKATVAQAQRFFRR--I-ELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTANT 133 (205)
T ss_dssp GGGCBCCCCEEETTCBHHHHHHHHHH--C-CCTTCCEEEEECTTCBEEEEEEHHHHTTSCTTSBGGGGCCSSCCCEETTS
T ss_pred HhhccCceEEECCCCcHHHHHHHHHh--h-CccCeeEEEEEcCCCeEEEEEEHHHHHhCCCcchHHHHhcCCCeEECCCC
Confidence 555543 56788899998888887 1 11112223333433 3577788888
Q ss_pred HHHHHHhhhhhCC
Q psy5166 57 ELEEAIRLYEVNH 69 (76)
Q Consensus 57 ELeEA~RL~elnk 69 (76)
-+++|+++..-++
T Consensus 134 ~l~~a~~~m~~~~ 146 (205)
T 3kxr_A 134 TLLDAAEAIEHSR 146 (205)
T ss_dssp CHHHHHHHHHTSS
T ss_pred CHHHHHHHHHhcC
Confidence 8888888776544
No 25
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=55.32 E-value=17 Score=24.71 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=39.2
Q ss_pred cCCCCChHHHHHHHHHhhc-----CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCC
Q psy5166 13 IKPDITYDRLQEEVKEMCK-----FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHE 70 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~-----~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkd 70 (76)
..+.++.++...-++.... -.++..+.+.||+.+| +..+-+..|+++.++-+.-.++
T Consensus 179 ~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~-~~~~~~~~ei~~~~~~~~~~~~ 240 (242)
T 1ryp_E 179 WHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQD-GFKIYDNEKTAELIKELKEKEA 240 (242)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTT-EEEECCHHHHHHHHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CeEECCHHHHHHHHHHHhhhhc
Confidence 3467888885555544321 1235679999999877 4888899999999886654443
No 26
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=55.07 E-value=13 Score=22.17 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGD 48 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGD 48 (76)
++.+.-..++++.|.++|-+++.+.++.+..|. .+-+.|.+|.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~Q-rLi~~~~~~~ 55 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYM-QLQLIDDRGI 55 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGE-EEEEECTTSC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHE-EEEEecCCCC
Confidence 345556779999999999999999999998865 3334455443
No 27
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=53.19 E-value=21 Score=25.19 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=43.1
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHH
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMEL 58 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~EL 58 (76)
.+|......++++.+-.+|++.+.+-.++.+..-|.+..+|..|...-+.+...+
T Consensus 25 ldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i 79 (296)
T 3qij_A 25 LDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEI 79 (296)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBH
T ss_pred cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhH
Confidence 4678889999999999999999999999999888988777765544334333333
No 28
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=51.34 E-value=24 Score=23.68 Aligned_cols=31 Identities=6% Similarity=0.162 Sum_probs=26.9
Q ss_pred EEEecCCCCChHHHHHHHHHhhcCCCCCeee
Q psy5166 9 FITYIKPDITYDRLQEEVKEMCKFSTDQVFT 39 (76)
Q Consensus 9 ~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT 39 (76)
++.-++.++||++|.+-|+.++.+.+.|++.
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afgw~~~HL~~ 54 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMDWEDYHLHE 54 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTTCCCCSCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCEeeE
Confidence 4556789999999999999999999998843
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=50.63 E-value=24 Score=20.36 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=29.2
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCC
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTD 35 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~ 35 (76)
..+|......++++.+..+|.+++.+..+++..
T Consensus 16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (88)
T 1sif_A 16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPD 48 (88)
T ss_dssp ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGG
T ss_pred eCCCCEEEEEECCCChHHHHHHHHHHHHCcChh
Confidence 467888999999999999999999999988754
No 30
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=49.44 E-value=25 Score=20.41 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=29.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|......++++.|..+|.+++.+..+++..+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 50 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSK 50 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHH
Confidence 568888889999999999999999999987654
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=49.41 E-value=28 Score=18.64 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=28.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTD 35 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~ 35 (76)
.+|......++++.+..+|.+++....+++..
T Consensus 8 ~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~ 39 (76)
T 3a9j_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 36788888999999999999999999988755
No 32
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=49.10 E-value=23 Score=22.40 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCce
Q psy5166 15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL 73 (76)
..|+|++++.-+......... .+|.+..+....-+...++.+||+.+-.+++-.|
T Consensus 76 g~i~~~EF~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I 130 (208)
T 2ct9_A 76 DQVNFRGFMRTLAHFRPIEDN----EKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKI 130 (208)
T ss_dssp SCEEHHHHHHHHHTTSCCC---------------CCTTSHHHHHHHHHHHHCTTCSSEE
T ss_pred CcCcHHHHHHHHHhhccccch----hhhcccccccccccHHHHHHHHHHHHCCCCCCEE
Confidence 457888887776655443321 2465544443334467889999999988877654
No 33
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=48.83 E-value=28 Score=21.83 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=41.8
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCe-eeEEeeccCCCccccCcHHHHHHHHhh
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQV-FTVKWVDEEGDPCLISTQMELEEAIRL 64 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~-fT~kwvDeEGDPctiSsq~ELeEA~RL 64 (76)
.+...++++.++++|.+.+.+-=.|.-+.| +|.- ++-+|...-+.+--.||||-|-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~-~~~~~k~LYmq~pp~Lee~Tr~ 62 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT-LEGKNRTLYMQSVTSIEERTRP 62 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEE-ETTEEEEEECSSCHHHHHHHHH
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeee-cCCCCCeEEEeCcHHHHHHhHh
Confidence 455678999999999999988544544445 5554 6877888777776789999884
No 34
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=48.50 E-value=27 Score=20.38 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=30.0
Q ss_pred cccCceEEE-ecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 3 LFSDEVFIT-YIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 3 ~~~gdi~~~-~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.++|..+.. .++++-++.+|-.++.+..++...+.
T Consensus 13 k~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~Q 48 (90)
T 1v5t_A 13 KWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQ 48 (90)
T ss_dssp EETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTC
T ss_pred EECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHe
Confidence 457888888 89999999999999999999986643
No 35
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=48.19 E-value=30 Score=18.51 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|......++++.+..+|.+++.+..+.+..+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~ 40 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHH
Confidence 367888889999999999999999999887553
No 36
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=47.98 E-value=20 Score=23.62 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.1
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhc-CCCCCeeeEEeeccCCCccccCc-HHHHHHHHh
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCK-FSTDQVFTVKWVDEEGDPCLIST-QMELEEAIR 63 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~-~~~~q~fT~kwvDeEGDPctiSs-q~ELeEA~R 63 (76)
.|+.++..-|.-+-.|..+-.+-++...+ =-.+|+|.+.+||=+++|=..+- +.++-|+|.
T Consensus 12 VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ 74 (111)
T 1xg8_A 12 VYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIE 74 (111)
T ss_dssp EEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHH
T ss_pred EEcccccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHh
Confidence 57788888888888876665554444332 12678999999998888766554 556766664
No 37
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=47.81 E-value=43 Score=24.41 Aligned_cols=53 Identities=6% Similarity=0.062 Sum_probs=42.2
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeecc-CCCccccCcHHHHHH
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDE-EGDPCLISTQMELEE 60 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDe-EGDPctiSsq~ELeE 60 (76)
.....++.+.+.+++|+.+..-+++.+.+.|.+...+. +|+..-+.+..-+.+
T Consensus 23 ~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 88999999999999999999999998888898877663 556555555444443
No 38
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=47.69 E-value=28 Score=20.07 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.2
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.|..+|-.++.+..+.+.++
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 40 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhH
Confidence 578888899999999999999999999988653
No 39
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=47.38 E-value=16 Score=23.54 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=33.9
Q ss_pred ceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhh
Q psy5166 7 EVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 64 (76)
Q Consensus 7 di~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL 64 (76)
.|+...|++...-.+|.+-.+. |. -|+++|||+--=-.+.+.-..-.+|++-
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~---fg---gv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSA---FG---NIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTT---SE---EEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhc---cC---CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 4666688888887776654432 22 7999999975545555554445566553
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=46.90 E-value=30 Score=18.76 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=28.1
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|......++++.+..+|..++....+.+..+
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~ 43 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVAN 43 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHH
Confidence 67888889999999999999999999887553
No 41
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=46.24 E-value=32 Score=19.23 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.9
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++.+..+++..+
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 52 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 52 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHH
Confidence 468888889999999999999999999988653
No 42
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=45.23 E-value=35 Score=21.89 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=37.4
Q ss_pred ceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhh
Q psy5166 7 EVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 64 (76)
Q Consensus 7 di~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL 64 (76)
.|+...|++...-.+|.+-.+.. . -|+++|||+--=-.+.+.-..-.+|++-
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~f---g---gv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAF---G---NIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTT---C---SCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhcc---C---CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 56667899999888876655433 2 6899999986666666666666777664
No 43
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=44.80 E-value=35 Score=18.78 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=28.4
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTD 35 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~ 35 (76)
.+|..+...++++.++.+|.+++....+++..
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~ 42 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 42 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChH
Confidence 46788888999999999999999999998855
No 44
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=43.99 E-value=35 Score=18.82 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=28.9
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|......++++.++.+|.+++.....++..+
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~ 43 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQ 43 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 467788889999999999999999999988764
No 45
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=43.62 E-value=37 Score=18.73 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=29.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|......++++.+..+|-.++.+..+.+..+
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 44 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 44 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHH
Confidence 468888889999999999999999999988664
No 46
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.42 E-value=43 Score=18.75 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=28.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|.+++.+..+++..+
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~ 47 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ 47 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTT
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHH
Confidence 357777888999999999999999999887654
No 47
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=43.40 E-value=39 Score=19.38 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=28.1
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|......++++.+..+|..++.+..+++..+
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~ 44 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 44 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTT
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhH
Confidence 57778888999999999999999999988664
No 48
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=43.06 E-value=39 Score=20.55 Aligned_cols=33 Identities=3% Similarity=0.090 Sum_probs=29.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
++|..+...++++.+..+|..++....++...+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 75 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHH
Confidence 578889999999999999999999999987654
No 49
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.95 E-value=41 Score=18.38 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=27.7
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTD 35 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~ 35 (76)
.+|..+...++++.+..+|.+++....+++..
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 46 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVR 46 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45777788899999999999999999988755
No 50
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.31 E-value=32 Score=20.23 Aligned_cols=41 Identities=5% Similarity=0.187 Sum_probs=33.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeecc
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDE 45 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDe 45 (76)
.+|+.+...+..+++..+|..++...++.+..+ ..+-+.++
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~-q~L~~~~~ 60 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSE-LLLSYESS 60 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTT-CEEEEECT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhH-eEEEEEcC
Confidence 467788889999999999999999999988763 34555553
No 51
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.04 E-value=50 Score=18.92 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=27.8
Q ss_pred cccCceEEEecCCC-----CChHHHHHHHHHhhcCCCCC
Q psy5166 3 LFSDEVFITYIKPD-----ITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 3 ~~~gdi~~~~~~~~-----i~~e~L~~e~rd~c~~~~~q 36 (76)
.++|......++++ .++.+|.+++....++...+
T Consensus 13 k~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~ 51 (92)
T 1wxv_A 13 THSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSF 51 (92)
T ss_dssp ECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTT
T ss_pred EECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHH
Confidence 34677777888885 99999999999999887654
No 52
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=40.55 E-value=68 Score=21.70 Aligned_cols=48 Identities=8% Similarity=0.062 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHhhcC-----CCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 16 DITYDRLQEEVKEMCKF-----STDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 16 ~i~~e~L~~e~rd~c~~-----~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
.++.++...-++....- .+...+.+.||+.+| +.+-+..|+++.+.-.
T Consensus 187 ~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~~ 239 (243)
T 1ryp_A 187 EESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLVAI 239 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHHHh
Confidence 68888876665544321 245578999999988 8899999999988754
No 53
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=40.35 E-value=12 Score=19.71 Aligned_cols=25 Identities=4% Similarity=0.169 Sum_probs=18.1
Q ss_pred ccccCcHHHHHHHHhhhhhCCCCce
Q psy5166 49 PCLISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 49 PctiSsq~ELeEA~RL~elnkdseL 73 (76)
|.+++++.-+.||+++..-++-+.+
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~ 26 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSA 26 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEE
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEE
Confidence 6778888888888888766554433
No 54
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=39.91 E-value=41 Score=20.24 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=27.3
Q ss_pred ceEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 7 EVFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 7 di~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
......++++.+.++|..++.+..+.+..|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~Q 58 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTM 58 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHe
Confidence 3677889999999999999999999997764
No 55
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=39.56 E-value=11 Score=21.28 Aligned_cols=26 Identities=8% Similarity=0.206 Sum_probs=21.5
Q ss_pred ccccCcHHHHHHHHhhhhhCCCCcee
Q psy5166 49 PCLISTQMELEEAIRLYEVNHEPELV 74 (76)
Q Consensus 49 PctiSsq~ELeEA~RL~elnkdseL~ 74 (76)
|+|++|+.-+.||+++..-++=+.+.
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~ 27 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAV 27 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEE
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEE
Confidence 67899999999999998887766554
No 56
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=39.31 E-value=65 Score=20.64 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=28.8
Q ss_pred EEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCC
Q psy5166 9 FITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGD 48 (76)
Q Consensus 9 ~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGD 48 (76)
.+.+-+..+++.+|...+|-..+... .+.+..||++||
T Consensus 59 ~vl~e~~~i~~~~L~~~vRla~sVrK--~~VlAiVd~dg~ 96 (116)
T 2zyz_A 59 YVMVEGVEVTIQTLLSVINMGETLSM--PVVLALVSNDGT 96 (116)
T ss_dssp EEEETTCCBCHHHHHHHHHHHHHHTC--CEEEEEECTTSC
T ss_pred EEecCCCccCHHHHHHHHHHhhccce--EEEEEEEcCCCC
Confidence 44555677899999999988888764 466777888887
No 57
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=38.15 E-value=25 Score=20.65 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=25.6
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEe
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKW 42 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kw 42 (76)
+.+..++++-++.+|.+++.+.++.+.. .|+++.
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~-~~~l~~ 48 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNN-GFSVYI 48 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTT-TCCCCC
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCC-cceEEe
Confidence 4445589999999999999999997643 344444
No 58
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.05 E-value=51 Score=19.57 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=29.3
Q ss_pred cccCceE-EEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 3 LFSDEVF-ITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 3 ~~~gdi~-~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.++|..+ ...++++-++.+|..++.+..++...+
T Consensus 13 k~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 13 KWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp EETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred EECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 4578888 489999999999999999999998664
No 59
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=37.86 E-value=41 Score=19.05 Aligned_cols=33 Identities=3% Similarity=0.204 Sum_probs=28.8
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++.+..++...+
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 45 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK 45 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 367888889999999999999999999987664
No 60
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.84 E-value=50 Score=20.30 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=31.2
Q ss_pred cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.++|..+...++++-+.++|..++.+.-+....|.
T Consensus 15 k~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Q 49 (100)
T 2dzm_A 15 EYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKM 49 (100)
T ss_dssp ECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTC
T ss_pred EeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHe
Confidence 56888888999999999999999999999987754
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=37.75 E-value=45 Score=20.41 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|......++++.+..+|.+++.+..+++..+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 49 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 49 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 578888899999999999999999999887553
No 62
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=37.07 E-value=70 Score=21.44 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=32.7
Q ss_pred cCCCCChHHHHHHHHHhhcC-----CCCCeeeEEeeccCCCccccCcHHHHHH
Q psy5166 13 IKPDITYDRLQEEVKEMCKF-----STDQVFTVKWVDEEGDPCLISTQMELEE 60 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~~-----~~~q~fT~kwvDeEGDPctiSsq~ELeE 60 (76)
+.+.++.++..+-++....- .++..+.+.||+.+| ++.+-+..|+++
T Consensus 180 ~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~-~~~~~~~~ei~~ 231 (233)
T 1yar_A 180 YKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGN-KYRIYDQEEVKK 231 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTS-CCEECCHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CEEECCHHHHHh
Confidence 34678888765555443211 135678999999887 688888888875
No 63
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=36.56 E-value=88 Score=21.42 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.1
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCc
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDP 49 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDP 49 (76)
+| .+...++++.+-.++++++.+-.++.+.+-|.+..++.+|..
T Consensus 10 d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~ 53 (294)
T 1ef1_A 10 DA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS 53 (294)
T ss_dssp TE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE
T ss_pred Cc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCce
Confidence 45 456889999999999999999999999888888777655543
No 64
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=36.06 E-value=25 Score=20.42 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=12.5
Q ss_pred cHHHHHHHHhhhhhCC
Q psy5166 54 TQMELEEAIRLYEVNH 69 (76)
Q Consensus 54 sq~ELeEA~RL~elnk 69 (76)
+..||.||||++ -++
T Consensus 8 ~~eel~eAFr~f-~dg 22 (75)
T 1h8b_A 8 TAEQVIASFRIL-ASD 22 (75)
T ss_dssp THHHHHHHHHHH-TTS
T ss_pred CHHHHHHHHHHH-hcC
Confidence 779999999999 444
No 65
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=36.00 E-value=47 Score=18.73 Aligned_cols=34 Identities=3% Similarity=0.183 Sum_probs=29.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.+|......++++.+..+|..++.+..+++..+.
T Consensus 25 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 25 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 3677888889999999999999999999886643
No 66
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.65 E-value=53 Score=19.49 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=26.2
Q ss_pred ceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 7 EVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 7 di~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
......++++.++++|..++....++..++
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 51 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEE 51 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGG
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHH
Confidence 677788999999999999999999988654
No 67
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=35.34 E-value=57 Score=18.90 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=27.8
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTD 35 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~ 35 (76)
.+|..+...++++.++.+|.+++....+++..
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~ 39 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChh
Confidence 36788888999999999999999999988755
No 68
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=34.40 E-value=60 Score=18.53 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=29.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++....++...+
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQ 57 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhh
Confidence 478888889999999999999999999988653
No 69
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=34.25 E-value=59 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=28.8
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.++.+|..++....+++..+
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 62 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 62 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH
Confidence 578888889999999999999999999987653
No 70
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=34.20 E-value=72 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.009 Sum_probs=32.9
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCc
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDP 49 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDP 49 (76)
+++.+-+..+++.+|...+|-..+... .+.+..||+|||.
T Consensus 139 vlVl~E~~~i~~~dL~~~vRla~sVrK--~lVLAiVd~eGdV 178 (190)
T 3ajv_A 139 VLVLSEGYPLKIGSLVEWSRGASMDNH--SPIVAIVDRTGLI 178 (190)
T ss_dssp EEEEETTCCEEHHHHHHHHHHHHHTTC--EEEEEEECTTCCE
T ss_pred EEEEcCCCccCHHHHHHHHHHhhcccc--EEEEEEEcCCCCE
Confidence 566777788899999999998888765 5778889999984
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=34.14 E-value=56 Score=19.83 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=28.5
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++.+..+++..+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~ 40 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH
Confidence 467888889999999999999999999887553
No 72
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=33.65 E-value=25 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccC
Q psy5166 18 TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLIS 53 (76)
Q Consensus 18 ~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiS 53 (76)
||++|.++++..+.--.+ ||.+.+ ||+|-|
T Consensus 282 Sfe~l~e~l~~fa~~~~r-pf~~~y-----~p~t~~ 311 (343)
T 1toh_A 282 SFNDAKDKLRNYASRIQR-PFSVKF-----DPYTLA 311 (343)
T ss_dssp CHHHHHHHHHHHHHTSCC-SCEEEE-----ETTTTE
T ss_pred CHHHHHHHHHHHHHhCCC-Cceeee-----CCCcce
Confidence 899999999999886554 999998 888865
No 73
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=33.48 E-value=49 Score=20.00 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=36.1
Q ss_pred ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCcc
Q psy5166 2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPC 50 (76)
Q Consensus 2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPc 50 (76)
-+|+|+.+=..++..+|+-.|.+.+.+..++... +..=.|+--++-+.
T Consensus 12 ~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv~NK~~ 59 (81)
T 2bps_A 12 KHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRVVNKDK 59 (81)
T ss_dssp TTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEEGGGTE
T ss_pred eccCCceEEEECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEEecCCE
Confidence 3689999999999999999999999999999853 22213554333333
No 74
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=33.19 E-value=1e+02 Score=20.60 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred cCCCCChHHHHHHHHHhhcC-----CCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166 13 IKPDITYDRLQEEVKEMCKF-----STDQVFTVKWVDEEGDPCLISTQMELEEAIR 63 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~~-----~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R 63 (76)
+.+.++.++...-.+....- .++..+.+.||+.+| +.+-+..|+++-+.
T Consensus 177 ~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~ 230 (233)
T 1iru_B 177 YNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLA 230 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHH
Confidence 44678888766666554321 235679999999988 88888889987653
No 75
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=33.19 E-value=37 Score=23.84 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=41.2
Q ss_pred cCCCCChHHHHHHHHHhhcC----CCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCC
Q psy5166 13 IKPDITYDRLQEEVKEMCKF----STDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHE 70 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~~----~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkd 70 (76)
..+.++.++...-++....- .+...+.+.||+.+|.+..+-+..|+++.++-+.-..+
T Consensus 184 ~~~~ms~eea~~la~~al~~a~~~~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~~~ 245 (264)
T 3h4p_A 184 YRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKLN 245 (264)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTSSS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHhhh
Confidence 34677887766655443211 35557899999998999999999999988776655443
No 76
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.03 E-value=51 Score=19.79 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=29.1
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++.+.+++...+
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 41 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQ 41 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhh
Confidence 478888899999999999999999999987553
No 77
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.94 E-value=71 Score=19.12 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=27.6
Q ss_pred cCceEEEecCC-CCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIKP-DITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~~-~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|..+...+++ +.+..+|.+++....+++..+
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~ 71 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANK 71 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTT
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHH
Confidence 57777888998 999999999999999987553
No 78
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=32.21 E-value=71 Score=19.32 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=26.6
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.....++++.+.++|..++.+..+.+..|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q 57 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSM 57 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHe
Confidence 566788999999999999999999998764
No 79
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=31.96 E-value=70 Score=18.18 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|..++....+++..+
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~ 41 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 41 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhH
Confidence 467888889999999999999999999988654
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=31.88 E-value=71 Score=19.23 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=24.7
Q ss_pred cCceEEEecC-CCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIK-PDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~-~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|.. +..++ ++.++.+|.+++.+....+..+
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 3544 45688 9999999999999999987553
No 81
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.62 E-value=80 Score=18.11 Aligned_cols=31 Identities=6% Similarity=0.285 Sum_probs=26.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
|..+...++++.++.+|.+++.+..++...+
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~ 56 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADR 56 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 6677788999999999999999999887654
No 82
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=30.16 E-value=8.9 Score=22.61 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=14.7
Q ss_pred eeeEEeeccCCCccccCcHHH
Q psy5166 37 VFTVKWVDEEGDPCLISTQME 57 (76)
Q Consensus 37 ~fT~kwvDeEGDPctiSsq~E 57 (76)
-+.+.| | ||..|+--|+|
T Consensus 34 dinvtw-d--gdtvtvegqle 51 (62)
T 2gjh_A 34 DINVTW-D--GDTVTVEGQLE 51 (62)
T ss_dssp SCEEEE-C--SSCEEEEEECC
T ss_pred cceeEE-c--CCEEEEEeEEc
Confidence 478999 5 99999988765
No 83
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=29.72 E-value=72 Score=18.53 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=26.6
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
|......++++.+..+|.+++.+..+++..+
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPED 57 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhH
Confidence 6677788999999999999999999987553
No 84
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=29.46 E-value=1.2e+02 Score=19.71 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.1
Q ss_pred cCCCCChHHHHHHHHHhh----c--CCCCCeeeEEeeccCCCccccCcHHHHHHHHhh
Q psy5166 13 IKPDITYDRLQEEVKEMC----K--FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 64 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c----~--~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL 64 (76)
..+.++.++...-.+... . ..++..+.+.||+.+| +.+-+..|+++-+.-
T Consensus 144 ~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 144 FTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILAK 199 (202)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGGG
T ss_pred cCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHHH
Confidence 345778777655553332 2 1245579999999865 888888999887653
No 85
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=29.43 E-value=25 Score=20.71 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCcccc
Q psy5166 15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLI 52 (76)
Q Consensus 15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPcti 52 (76)
.+..++.|-++|++.++-....++ .| ..||+|-+
T Consensus 3 ~s~~Le~Lm~~m~~~y~~~~~~~~--~~--~~G~~c~a 36 (94)
T 3fdr_A 3 RSLQLDKLVNEMTQHYENSVPEDL--TV--HVGDIVAA 36 (94)
T ss_dssp --CHHHHHHHHHHHHHTTCCCCCC--CC--CTTCEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCC--CC--CCCCEEEE
Confidence 356789999999999986543333 33 45888866
No 86
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=29.36 E-value=31 Score=27.97 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=18.4
Q ss_pred cCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCc
Q psy5166 13 IKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPE 72 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdse 72 (76)
+..+++.|+-.++++.+=++.+. || -||+|++|+.-+.||++|-+-.+-|.
T Consensus 121 IH~n~sie~Qa~~V~~VKr~e~g------~i---~dPvtl~P~~Tv~da~~l~~~~~isg 171 (556)
T 4af0_A 121 IHHNCSAEEQAAMVRRVKKYENG------FI---TDPLCLGPDATVGDVLEIKAKFGFCG 171 (556)
T ss_dssp ECCSSCHHHHHHHHHHHHHCCC--------------------------------------
T ss_pred EcCCCCHHHHHHHHHHHHhcccC------cc---CCCeEcCCCCCHHHHHHHHHHhCCCc
Confidence 56788999999999998887764 32 28999999999999999977655443
No 87
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=29.29 E-value=33 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.4
Q ss_pred EEeeccCCCccccCcHHHHHHHHh
Q psy5166 40 VKWVDEEGDPCLISTQMELEEAIR 63 (76)
Q Consensus 40 ~kwvDeEGDPctiSsq~ELeEA~R 63 (76)
+.|+|++|||.-+..=..+.+|+.
T Consensus 123 ~~y~d~~g~~~~~~d~~~~~~~~~ 146 (153)
T 3bal_A 123 LNFIDDNGKVIASIGWAEAQGAWL 146 (153)
T ss_dssp EEEECTTSCEEEEECHHHHHHHHH
T ss_pred eEEECCCCCEeEEEcHHHHHHHHH
Confidence 489999999999877666665543
No 88
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=29.25 E-value=71 Score=20.53 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=28.7
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcC----CCCCeeeEEeeccCC
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKF----STDQVFTVKWVDEEG 47 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~----~~~q~fT~kwvDeEG 47 (76)
++-..+..+++++.|.+-....|-. .+-+-||+.++|++|
T Consensus 71 vlP~~~~~~ls~~~l~~~f~~~~~~~~~~~~~~ri~LaIv~~DS 114 (123)
T 2gw6_A 71 VVPTPITASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDS 114 (123)
T ss_dssp EEEEETTCEEEHHHHHHHHHHHHHHTTCSSCCCEEEEEEECTTS
T ss_pred EEEEecCcccCHHHHHHHHHhhccccccCCCCCEEEEEEEcCCC
Confidence 5567778889999887776655422 133568999999876
No 89
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=29.18 E-value=70 Score=17.50 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=28.6
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
..|......++++-++..|.+++.+..+++..+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~ 43 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 43 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCccc
Confidence 467788889999999999999999999988664
No 90
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=28.94 E-value=1.4e+02 Score=20.26 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=36.4
Q ss_pred cCCCCChHHHHHHHHHhh----c-CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 13 IKPDITYDRLQEEVKEMC----K-FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c----~-~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
..+.++.++..+-++... . -.++..+.+.||+.+++++.+-+..|+++.+.-+
T Consensus 179 ~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~ 236 (246)
T 1j2p_A 179 YRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERA 236 (246)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHH
Confidence 345778777555444322 1 1345679999999445589999999999988755
No 91
>2byo_A Lipoprotein LPPX; lipid transport, palmitate; HET: HXA LNL; 2.15A {Mycobacterium tuberculosis} SCOP: b.125.1.3
Probab=28.74 E-value=17 Score=24.96 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=22.0
Q ss_pred EEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccC
Q psy5166 9 FITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLIS 53 (76)
Q Consensus 9 ~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiS 53 (76)
.++++.-.++.+.+-. +.. ... +..-..=|||+||+|..+-
T Consensus 143 ~t~~~tGtv~~~~~~~-l~~--~~~-~~~~~tlWV~~eG~~~l~r 183 (207)
T 2byo_A 143 STTKITGTIPASSVKM-LDP--GAK-SARPATVWIAQDGSHHLVR 183 (207)
T ss_dssp EEEEEEEEECHHHHHH-HCT--TCC-SCEEEEEEEESSSSCCEEE
T ss_pred EEEEEEeecCHHHHhh-hcc--ccc-CCcceEEEEccCCCCceEE
Confidence 4455555555555532 111 111 2133567999999998653
No 92
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.63 E-value=29 Score=21.00 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=6.9
Q ss_pred CCccccCcH--HHHHHHHhhh
Q psy5166 47 GDPCLISTQ--MELEEAIRLY 65 (76)
Q Consensus 47 GDPctiSsq--~ELeEA~RL~ 65 (76)
|+|+++|++ .++.+||+.+
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~ 24 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSL 24 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 444444432 2334444444
No 93
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=28.53 E-value=40 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCCCCCeeeEEeec
Q psy5166 20 DRLQEEVKEMCKFSTDQVFTVKWVD 44 (76)
Q Consensus 20 e~L~~e~rd~c~~~~~q~fT~kwvD 44 (76)
..|.+++.++|.-+.+ -||+.|+.
T Consensus 34 ~~Lid~La~i~~~~~e-~fTle~i~ 57 (122)
T 1u9d_A 34 PTLLNELSSLLSTARN-AFTFELIN 57 (122)
T ss_dssp HHHHHHHHHHHTCCGG-GCEEEECC
T ss_pred HHHHHHHHHHHCCCcc-cEEEEEee
Confidence 3578899999999877 79999977
No 94
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.51 E-value=71 Score=20.36 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=29.7
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
++|..+...++++.++.+|-.++.+..++...+
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 60 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 60 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 678888999999999999999999999988754
No 95
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=28.48 E-value=74 Score=24.16 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCCCCeeeEEeeccCC-CccccCcHHHHHHHHh
Q psy5166 20 DRLQEEVKEMCKFSTDQVFTVKWVDEEG-DPCLISTQMELEEAIR 63 (76)
Q Consensus 20 e~L~~e~rd~c~~~~~q~fT~kwvDeEG-DPctiSsq~ELeEA~R 63 (76)
..|..-++.+...+..++| .|+|++| ..+.|+| -+|.+-++
T Consensus 186 ~~l~~~l~~~~~~pg~~LF--~~~d~~g~~~~~v~s-~~vN~yL~ 227 (346)
T 3m4a_A 186 RTLAANMQKLLDLPGPWLF--QTVDAGGGERRRIHS-TELNAYLR 227 (346)
T ss_dssp HHHHHHHHHHHTSCSSBSC--EEECCCC-CEEECCH-HHHHHHHH
T ss_pred HHHHHHHHHHHhCchhhhc--ceEcCCCCccccCCH-HHHHHHHH
Confidence 3577777777777766666 5889999 9999999 45655544
No 96
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=28.45 E-value=34 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccC
Q psy5166 18 TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLIS 53 (76)
Q Consensus 18 ~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiS 53 (76)
||++|.++++..++--.+ ||.+.+ ||+|-|
T Consensus 289 Sfe~l~~~l~~fa~~~~r-pf~~~y-----~~~t~~ 318 (325)
T 1j8u_A 289 SFNDAKEKVRNFAATIPR-PFSVRY-----DPYTQR 318 (325)
T ss_dssp CHHHHHHHHHHHHTTSCC-SSCEEE-----ETTTTE
T ss_pred CHHHHHHHHHHHHHhCCC-Cceeee-----CCCCce
Confidence 899999999998876544 999998 788755
No 97
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=27.81 E-value=39 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccC
Q psy5166 18 TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLIS 53 (76)
Q Consensus 18 ~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiS 53 (76)
+|++|.++++..+.--.+ ||.+.+ ||+|-|
T Consensus 391 sf~~l~~~~~~f~~~~~~-pf~~~y-----~~~t~~ 420 (429)
T 1phz_A 391 SFSDAKEKVRTFAATIPR-PFSVRY-----DPYTQR 420 (429)
T ss_dssp CHHHHHHHHHHHHTTSCC-SSEEEE-----ETTTTE
T ss_pred CHHHHHHHHHHHHHhCCC-Ccceee-----CCCccE
Confidence 899999999999986554 999998 787754
No 98
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=27.77 E-value=1e+02 Score=21.12 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=35.9
Q ss_pred CCCChHHHHHHHHHhh----cCC--CCCeeeEEeeccCCC-ccccCcHHHHHHHHhhhhh
Q psy5166 15 PDITYDRLQEEVKEMC----KFS--TDQVFTVKWVDEEGD-PCLISTQMELEEAIRLYEV 67 (76)
Q Consensus 15 ~~i~~e~L~~e~rd~c----~~~--~~q~fT~kwvDeEGD-PctiSsq~ELeEA~RL~el 67 (76)
+.++.++.....+... .-+ +.-.+.+.||+.+.. ...+-+..|++++++-..-
T Consensus 182 ~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~ 241 (254)
T 1iru_G 182 KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKE 241 (254)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHH
Confidence 4678888777443332 211 344589999997632 5888889999999886643
No 99
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=27.48 E-value=32 Score=21.24 Aligned_cols=26 Identities=0% Similarity=-0.118 Sum_probs=21.6
Q ss_pred CccccCcHHHHHHHHhhhhhCCCCce
Q psy5166 48 DPCLISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 48 DPctiSsq~ELeEA~RL~elnkdseL 73 (76)
+|.|++++.-+.+|+++..-++-.-|
T Consensus 114 ~~~tv~~~~~l~~a~~~m~~~~~~~l 139 (170)
T 4esy_A 114 PVVTAAPEDSVGSIADQMRRHGIHRI 139 (170)
T ss_dssp CSCCBCTTSBHHHHHHHHHHTTCSEE
T ss_pred CcccCCcchhHHHHHHHHHHcCCcEE
Confidence 79999999999999999877664443
No 100
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.45 E-value=85 Score=18.60 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.9
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
|......++++.+..+|.+++....+++..+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 64 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQ 64 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGG
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhh
Confidence 6677788999999999999999999987553
No 101
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.39 E-value=86 Score=18.64 Aligned_cols=33 Identities=3% Similarity=-0.019 Sum_probs=28.2
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.++.+|..++....++...+
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 63 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGS 63 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCccc
Confidence 367788889999999999999999999887553
No 102
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=26.24 E-value=93 Score=19.35 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=29.5
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.+..+|-.++.+..+++..+
T Consensus 10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 42 (159)
T 3rt3_B 10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQ 42 (159)
T ss_dssp TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 578888899999999999999999999998753
No 103
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.04 E-value=1e+02 Score=17.90 Aligned_cols=30 Identities=3% Similarity=-0.055 Sum_probs=25.7
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.....++++.+.++|..++....+.+..+.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~q 49 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCM 49 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTC
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHe
Confidence 466778999999999999999999986653
No 104
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.80 E-value=1e+02 Score=17.80 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=26.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHh---hcCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEM---CKFSTD 35 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~---c~~~~~ 35 (76)
.+|..+...++++.+..+|.+++... .+++..
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~ 42 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVA 42 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTT
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChh
Confidence 35788888999999999999999998 456544
No 105
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=25.56 E-value=1.3e+02 Score=20.32 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHhhc-----CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 16 DITYDRLQEEVKEMCK-----FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 16 ~i~~e~L~~e~rd~c~-----~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
.++.++...-++.... -.++..+.+.||+.+|-...+-+..|+++.+.-.
T Consensus 188 ~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~ 242 (246)
T 1iru_A 188 DWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242 (246)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHh
Confidence 7888886555443331 1345679999999877557888999999987644
No 106
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=25.47 E-value=47 Score=20.37 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=16.8
Q ss_pred cCcHHHHHHHHhhhhhCCCCce
Q psy5166 52 ISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 52 iSsq~ELeEA~RL~elnkdseL 73 (76)
.++..++.+||+++-.+++-.|
T Consensus 64 ~~~~~~l~~~F~~~D~d~dG~I 85 (143)
T 3a4u_B 64 MSPQELQLHYFKMHDYDGNNLL 85 (143)
T ss_dssp CCHHHHHHHHHHHTCTTCSSCE
T ss_pred cCHHHHHHHHHHHhCCCCCCcc
Confidence 3567788999999988877654
No 107
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=25.32 E-value=89 Score=16.94 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=26.1
Q ss_pred cCceE-EEe-cCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVF-ITY-IKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~-~~~-~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|... ... ++++.+..+|.+++.+..+.+..+
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~ 44 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGL 44 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhh
Confidence 46553 667 899999999999999999987654
No 108
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.09 E-value=1.2e+02 Score=18.82 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=27.0
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
|..+...++++.++.+|..++.+..++...+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 71 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQ 71 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSS
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcce
Confidence 6677788999999999999999999987654
No 109
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=24.93 E-value=1.1e+02 Score=21.99 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=35.3
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeecc
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDE 45 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDe 45 (76)
.+|......++.+.+-.++++++..-.++.+..-|.+...+.
T Consensus 93 ~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~ 134 (371)
T 3ivf_A 93 LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELM 134 (371)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC-
T ss_pred cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEec
Confidence 367788889999999999999999999999888888766543
No 110
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.68 E-value=1e+02 Score=18.52 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.+|..+...++++.++.+|..++....+++..+
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 75 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 75 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHH
Confidence 467888889999999999999999999988653
No 111
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=24.41 E-value=41 Score=19.66 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCccccCcHHHHHHHHhhhhhCCCCce
Q psy5166 47 GDPCLISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 47 GDPctiSsq~ELeEA~RL~elnkdseL 73 (76)
.++.++++..-+.+|+++..-++-+.+
T Consensus 15 ~~~~~v~~~~~~~~a~~~~~~~~~~~~ 41 (152)
T 4gqw_A 15 EDLHVVKPTTTVDEALELLVENRITGF 41 (152)
T ss_dssp TTCCCBCTTSBHHHHHHHHHHTTCSEE
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCceE
Confidence 378899999999999998876655444
No 112
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.06 E-value=1e+02 Score=17.19 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.7
Q ss_pred cC-ceEEE-ecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SD-EVFIT-YIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~g-di~~~-~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+| ..+.. .++++.+..+|.+++.+..+++..+
T Consensus 16 ~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~ 49 (89)
T 1wy8_A 16 DGSKTCTIEDVSRKATIEELRERVWALFDVRPEC 49 (89)
T ss_dssp TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTT
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhh
Confidence 46 56777 4999999999999999999987654
No 113
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=23.96 E-value=1.6e+02 Score=19.46 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=36.1
Q ss_pred cCCCCChHHHHHHHHHhh----c--CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166 13 IKPDITYDRLQEEVKEMC----K--FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEV 67 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c----~--~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el 67 (76)
..+.++.++..+-.+... . ..++..+.+.||+. +|++.+-+..|+++-+.-.++
T Consensus 150 ~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~-~~g~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 150 YSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITR-KDGYVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEET-TTEEEECCHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEC-CCCEEEcCHHHHHHHHHHHHH
Confidence 346778888555443322 1 22455699999997 356999999999988765543
No 114
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=23.82 E-value=1.1e+02 Score=18.91 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=25.9
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
.....++++.+.++|..++...++.+..|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~q 48 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSM 48 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHe
Confidence 466778899999999999999999987754
No 115
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=23.78 E-value=1.2e+02 Score=18.05 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=27.5
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|..+...++++.++.+|.+++....+++..+
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 75 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 75 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCccc
Confidence 57777888999999999999999999887653
No 116
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=23.62 E-value=1e+02 Score=17.99 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=28.9
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
..|......++++.++..|.+++.+..+++..|
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~ 61 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS 61 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhh
Confidence 467788889999999999999999999988664
No 117
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=23.57 E-value=1.1e+02 Score=20.75 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=37.4
Q ss_pred CceEE---EecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccC--------------------------CCccccCcHH
Q psy5166 6 DEVFI---TYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEE--------------------------GDPCLISTQM 56 (76)
Q Consensus 6 gdi~~---~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeE--------------------------GDPctiSsq~ 56 (76)
|++|+ .++.+..+.++....++..-. .......+-.+|++ .+|.+|++..
T Consensus 138 ~~iM~~~~~~v~~~~tv~ea~~~~~~~~~-~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~~v~~~~ 216 (278)
T 2yvy_A 138 GGLMTPEYVAVREGMTVEEVLRFLRRAAP-DAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVVYVRTDT 216 (278)
T ss_dssp GGTCBSCCCEECTTSBHHHHHHHHHHHTT-TCSCSSEEEEECTTCBEEEEEEHHHHHHSCTTCBSTTTSBSSCCCEETTS
T ss_pred HhhcCCCceEECCCCcHHHHHHHHHHccC-CccceeEEEEECCCCCEEEEEEHHHHhcCCCCCcHHHHhCCCCeEEeCCC
Confidence 45554 346778888888888887421 00111223333332 3577788888
Q ss_pred HHHHHHhhhhhCC
Q psy5166 57 ELEEAIRLYEVNH 69 (76)
Q Consensus 57 ELeEA~RL~elnk 69 (76)
-+++|+++..-++
T Consensus 217 ~l~~a~~~m~~~~ 229 (278)
T 2yvy_A 217 DQEEVARLMADYD 229 (278)
T ss_dssp BHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcC
Confidence 8888888776544
No 118
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=23.25 E-value=1.6e+02 Score=19.59 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=36.9
Q ss_pred cCCCCChHHHHHHHHHhh----c--CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCC
Q psy5166 13 IKPDITYDRLQEEVKEMC----K--FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH 69 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c----~--~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnk 69 (76)
..+.++.++..+-.+... . ..++..+.+..|+.+ .+.+-+..|+++-+.-.+-.+
T Consensus 146 ~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~--g~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 146 YDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKD--GVKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETT--EEEECCHHHHHHHHHHCC---
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC--CeEEcCHHHHHHHHHHhhccc
Confidence 446788888665544432 2 234557899999975 599999999999877655443
No 119
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication, ACOT7, macrophage; HET: COA; 1.78A {Mus musculus}
Probab=23.07 E-value=68 Score=19.41 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=21.4
Q ss_pred eeeEEeeccCCC--ccccC-----cHHHHHHHHhhhhh
Q psy5166 37 VFTVKWVDEEGD--PCLIS-----TQMELEEAIRLYEV 67 (76)
Q Consensus 37 ~fT~kwvDeEGD--PctiS-----sq~ELeEA~RL~el 67 (76)
.||+-++|.+|. |+.|. ++.|-+++.+-++.
T Consensus 105 ~~~~v~vd~~~~~k~~~iP~~~~~t~~e~~~~~~r~~~ 142 (151)
T 2v1o_A 105 TLWYVPLSLKNVDKVLEVPPIVYLRQEQEEEGRKRYEA 142 (151)
T ss_dssp EEEEEEEESSSTTCBCCCCCCCCSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCcCCcccccCCCCCCCCHHHHHHHHHHHHH
Confidence 467888999874 77665 46666666666655
No 120
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=22.64 E-value=33 Score=20.00 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=17.5
Q ss_pred CccccCcHHHHHHHHhhhhhCCCC
Q psy5166 48 DPCLISTQMELEEAIRLYEVNHEP 71 (76)
Q Consensus 48 DPctiSsq~ELeEA~RL~elnkds 71 (76)
+|.+++++.-+.+|+++..-++-+
T Consensus 83 ~~~~v~~~~~l~~~~~~m~~~~~~ 106 (135)
T 2rc3_A 83 QVAYVDLNNTNEDCMALITEMRVR 106 (135)
T ss_dssp SCCCBCTTCBHHHHHHHHHHHTCS
T ss_pred CCeEECCCCcHHHHHHHHHHhCCC
Confidence 677888888888888877655433
No 121
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=22.50 E-value=76 Score=20.90 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=34.7
Q ss_pred cCCCCChHHHHHHHHHhhc------CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166 13 IKPDITYDRLQEEVKEMCK------FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~------~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~ 65 (76)
..+.++.++...-.+.... ..++..+.+.||+.+ .+.+-+..|+++-+.-+
T Consensus 144 ~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~--g~~~~~~~ei~~~~~~~ 200 (212)
T 1ryp_L 144 YKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED--GWIYHGNHDVGELFWKV 200 (212)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT--EEEEEEEEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCC--ceEEECHHHHHHHHHHH
Confidence 3457788886666544332 345568999999975 48888888888875443
No 122
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing, X-RAY crystallography, translati hydrolase; 2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1 d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Probab=22.47 E-value=68 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=26.6
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCc
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDP 49 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDP 49 (76)
+++.+=...+++.+|.+.+|..-+.. +.-||+|||.
T Consensus 93 v~v~~E~~~i~~~~l~~~~~~a~~v~------lAvVd~egdv 128 (305)
T 1r0v_A 93 YLPISERKTIRMEEIAEKARNFDELR------LAVVDEESEI 128 (305)
T ss_dssp EEEEETTSCBCHHHHHHHTTTCSSCE------EEEECTTCCE
T ss_pred eEEecCCceeeHHHHHHHhhhcccce------EEEEcCCCCE
Confidence 56677778899999988876655432 7778888874
No 123
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.36 E-value=1.3e+02 Score=17.62 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=25.2
Q ss_pred eEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 8 VFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 8 i~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
.....++++.+..+|..++.+..+++..+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 54 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKR 54 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTT
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 66778899999999999999999987664
No 124
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=22.23 E-value=1.1e+02 Score=16.81 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.4
Q ss_pred cCceEEEecCCCCChHHHHHHHHHh---hcCCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEM---CKFSTD 35 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~---c~~~~~ 35 (76)
+|..+...++++.+..+|.+++.+. .++...
T Consensus 14 ~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~ 47 (85)
T 2wyq_A 14 QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVA 47 (85)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHH
Confidence 5778888999999999999999997 445533
No 125
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=22.19 E-value=2.2e+02 Score=21.19 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhh--CCCCceecC
Q psy5166 20 DRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEV--NHEPELVIH 76 (76)
Q Consensus 20 e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el--nkdseL~iH 76 (76)
+.+.+-+++.+.|...+... -.|++.+|....+..++..||+-+-- +.+..+++|
T Consensus 78 ~~m~~~L~~~~Gf~~~~I~l--Ltd~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~llfY 134 (350)
T 4f6o_A 78 HNIFNFLTNGYGYSSDDIVI--LTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLH 134 (350)
T ss_dssp HHHHHHHHHHSCCCGGGEEE--EETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCccceee--ecccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 44666777778887655432 45888889888899999999986532 344455543
No 126
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.02 E-value=1.2e+02 Score=18.81 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred CceEEEecCCCCChHHHHHHHHHhhcCCCCCe
Q psy5166 6 DEVFITYIKPDITYDRLQEEVKEMCKFSTDQV 37 (76)
Q Consensus 6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~ 37 (76)
|..+...++++.+..+|-.++.+-..++..|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQ 60 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYI 60 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHe
Confidence 56778889999999999999999999988765
No 127
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=21.87 E-value=27 Score=20.68 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=15.7
Q ss_pred CccccCcHHHHHHHHhhhhhCC
Q psy5166 48 DPCLISTQMELEEAIRLYEVNH 69 (76)
Q Consensus 48 DPctiSsq~ELeEA~RL~elnk 69 (76)
+|.++++..-+.+|+++..-++
T Consensus 78 ~~~~v~~~~~l~~~~~~m~~~~ 99 (130)
T 3hf7_A 78 EIYFVPEGTPLSTQLVKFQRNK 99 (130)
T ss_dssp CCCEEETTCBHHHHHHHHHHHC
T ss_pred CCeEeCCCCcHHHHHHHHHhcC
Confidence 5777777777888877766544
No 128
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=21.85 E-value=51 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHhhcCCCCCeeeEEeeccCCCccccC
Q psy5166 26 VKEMCKFSTDQVFTVKWVDEEGDPCLIS 53 (76)
Q Consensus 26 ~rd~c~~~~~q~fT~kwvDeEGDPctiS 53 (76)
++++| ..-.|+.+|++|+| -+|++
T Consensus 44 L~~~L---~~y~f~~e~i~EdG-s~t~~ 67 (139)
T 3k6q_A 44 IKDLL---QDLKIHAELSKEDG-IIIGT 67 (139)
T ss_dssp HHHHT---TTCCEEEEEEEETT-EEEEE
T ss_pred HHHHH---hcccCceEEEecCC-eEEEE
Confidence 45566 44479999999977 57765
No 129
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=21.73 E-value=1.9e+02 Score=19.40 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=34.7
Q ss_pred cCCCCChHHHHHHHHHhhcC-----CCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166 13 IKPDITYDRLQEEVKEMCKF-----STDQVFTVKWVDEEGDPCLISTQMELEEAIR 63 (76)
Q Consensus 13 ~~~~i~~e~L~~e~rd~c~~-----~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R 63 (76)
..+.++.++...-++....- .++..+.+.||+.+|- ..+-+..|+++-+.
T Consensus 185 ~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~ 239 (241)
T 1iru_E 185 YHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEELEEVIK 239 (241)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHHHHHHT
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHHHHHHH
Confidence 34667887766665543321 2356799999998775 77788889988664
No 130
>2kic_A Nitrogenase gamma subunit; N-NAFY, protein binding,metal TRA; NMR {Azotobacter vinelandii}
Probab=21.58 E-value=37 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.6
Q ss_pred ccCCCccccCcHHHHHHHHhhhh
Q psy5166 44 DEEGDPCLISTQMELEEAIRLYE 66 (76)
Q Consensus 44 DeEGDPctiSsq~ELeEA~RL~e 66 (76)
|++|....|++ .+|+.|+|+.-
T Consensus 65 ~~dge~~~v~~-~~lk~AvriLw 86 (98)
T 2kic_A 65 EEDVDMLDTPM-SALKDAVRILW 86 (98)
T ss_dssp TTTGGGSSCCS-SHHHHHHHHHH
T ss_pred cccccccCCCH-HHHHHHHHHHh
Confidence 36788888877 78999999863
No 131
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.47 E-value=70 Score=19.08 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=27.4
Q ss_pred cCceEEEecCCCCChHHHHHHHHHhhcCCCCC
Q psy5166 5 SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQ 36 (76)
Q Consensus 5 ~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q 36 (76)
+|......++++.+..+|.+++....++...+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 67 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVAN 67 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHH
Confidence 67777778899999999999999999987654
No 132
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.08 E-value=1.6e+02 Score=18.19 Aligned_cols=39 Identities=3% Similarity=-0.131 Sum_probs=33.0
Q ss_pred ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEe
Q psy5166 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKW 42 (76)
Q Consensus 4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kw 42 (76)
..|......++++-+..+|-.++.+-.+.+.+|---++|
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 467888899999999999999999999999887644445
No 133
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=20.39 E-value=33 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.5
Q ss_pred CccccCcHHHHHHHHhhhhhCCCCce
Q psy5166 48 DPCLISTQMELEEAIRLYEVNHEPEL 73 (76)
Q Consensus 48 DPctiSsq~ELeEA~RL~elnkdseL 73 (76)
++.++++..-+.||+++..-++-+.+
T Consensus 10 ~~~~v~~~~~~~~a~~~~~~~~~~~~ 35 (122)
T 3kpb_A 10 PPITAHSNISIMEAAKILIKHNINHL 35 (122)
T ss_dssp CCCCEETTSBHHHHHHHHHHHTCSCE
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCeE
Confidence 67788888889999988776554443
No 134
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.28 E-value=1.6e+02 Score=22.08 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=38.6
Q ss_pred CceEE---EecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccC--------------------------CCccccCcHH
Q psy5166 6 DEVFI---TYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEE--------------------------GDPCLISTQM 56 (76)
Q Consensus 6 gdi~~---~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeE--------------------------GDPctiSsq~ 56 (76)
|++|+ .++.++.+.++..+.+++.-. ..+....+-.+|++ .+|.++++..
T Consensus 158 ~~iM~~~~v~v~~~~tv~ea~~~~~~~~~-~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~~~~~v~dim~~~~~~v~~~~ 236 (473)
T 2zy9_A 158 GGLMTPEYVAVREGMTVEEVLRFLRRAAP-DAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVVYVRTDT 236 (473)
T ss_dssp TTTCBSCEEEECTTCBHHHHHHHHHHHGG-GCSEEEEEEEECTTSBEEEEEEHHHHHHSCTTSBGGGTSBSSCCCEESSS
T ss_pred HHhCCCCceEeCCCCcHHHHHHHHHhccC-CcCceeEEEEECCCCcEEEEEEHHHHhcCCCCCcHHHHhCCCCeEEeCCC
Confidence 34553 457888899998888887421 01111222223322 3677888888
Q ss_pred HHHHHHhhhhhCC
Q psy5166 57 ELEEAIRLYEVNH 69 (76)
Q Consensus 57 ELeEA~RL~elnk 69 (76)
.++||.++..-++
T Consensus 237 ~l~ea~~~m~~~~ 249 (473)
T 2zy9_A 237 DQEEVARLMADYD 249 (473)
T ss_dssp BHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhcC
Confidence 8888888876554
No 135
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=20.20 E-value=48 Score=20.21 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=16.3
Q ss_pred CccccCcHHHHHHHHhhhhhCCCC
Q psy5166 48 DPCLISTQMELEEAIRLYEVNHEP 71 (76)
Q Consensus 48 DPctiSsq~ELeEA~RL~elnkds 71 (76)
+|.+++++.-|.+|+++..-++-+
T Consensus 87 ~~~~v~~~~~l~~a~~~m~~~~~~ 110 (160)
T 2o16_A 87 DVTSVAPQAGLKESAIYMQKHKIG 110 (160)
T ss_dssp CEEEBCTTSBHHHHHHHHHHTTCS
T ss_pred CCeEECCCCCHHHHHHHHHHhCCC
Confidence 566777777777777776655543
Done!