RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5166
(76 letters)
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC,
ZIP/P62, MEK5, molecular recognition, transferase; NMR
{Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Length = 89
Score = 95.0 bits (236), Expect = 6e-28
Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ ++ IT+ +P I+++ L EV++MC F +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72
Query: 64 LYEVNHEPELVIH 76
LYE+N + EL+IH
Sbjct: 73 LYELNKDSELLIH 85
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1
dimer, signaling protein, transport protein; NMR {Rattus
norvegicus}
Length = 117
Score = 35.1 bits (80), Expect = 4e-04
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 18 TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAI 62
+RL V + F + E GD S+ EL A+
Sbjct: 58 PSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAM 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 7e-04
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 57 ELEEAIRLYEVNHEPELVIH 76
+L+ +++LY + P L I
Sbjct: 24 KLQASLKLYADDSAPALAIK 43
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system,
NF-KB signaling, alternative splicing, apoptosis,
cytoplasm, differentiation; NMR {Rattus norvegicus}
PDB: 2ktr_B
Length = 102
Score = 33.1 bits (75), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 19 YDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAI 62
+RL V + F + E GD S+ EL A+
Sbjct: 44 CERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAM 87
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: d.15.2.2
Length = 101
Score = 30.7 bits (68), Expect = 0.018
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 7 EVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 64
+ F+ + T+ ++ VK +T Q+ K++DEE + I++Q E EEA+++
Sbjct: 26 QSFLVSDPENTTWADIEAMVKVSFDLNTIQI---KYLDEENEEVSINSQGEYEEALKM 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.072
Identities = 10/81 (12%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 7 EVFI-TYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEE----GDPCLIS----TQME 57
+ F+ ++ + Y L +K + + T ++++ D + + ++++
Sbjct: 80 QKFVEEVLRIN--YKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 58 LEEAIR--LYEVNHEPELVIH 76
+R L E+ ++I
Sbjct: 136 PYLKLRQALLELRPAKNVLID 156
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR
{Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A
2kfk_A
Length = 85
Score = 26.9 bits (59), Expect = 0.29
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
+ D++F +K D TY L+ ++ F ++ +G I T ++ I+
Sbjct: 19 YKDDIFALMLKGDTTYKELRSKIAPRID---TDNFKLQTKLFDGSGEEIKTDSQVSNIIQ 75
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain,
interaction domain, Z finger; 1.56A {Homo sapiens}
SCOP: d.15.2.2 PDB: 2g4s_A
Length = 87
Score = 26.8 bits (58), Expect = 0.37
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 18 TYDRLQEEVKEMCKFSTDQ-VFTVKWVDEEGDPCLISTQMELEEAIRL 64
+ +++ M K S D +K++DEE + I++Q E EEA+++
Sbjct: 25 PENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKM 72
>1pqs_A Cell division control protein 24; alpha and beta protein, cell
cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2
PDB: 1tz1_A
Length = 77
Score = 25.6 bits (56), Expect = 0.95
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 7 EVFITYIKPDITYDRLQEEVKEMCKFST----DQVFTVKWVDEEGDPCLISTQMELEEAI 62
E+F ++ +D L + + + +K+ DE+GD ++ + + A
Sbjct: 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 61
Query: 63 RLYEVNHEPELVI 75
+ N+E L I
Sbjct: 62 EMLAENNEKFLNI 74
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif,
OPCA motif, yeast, cell polarity, protein-protein
interaction; NMR {Saccharomyces cerevisiae} SCOP:
d.15.2.2 PDB: 2kfj_A 2kfk_B
Length = 98
Score = 25.3 bits (55), Expect = 1.5
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 4 FSDEVFITYIKPDITYDRLQEEVKEMCKFST----DQVFTVKWVDEEGDPCLISTQMELE 59
S E+F ++ +D L + + + +K+ DE+GD ++ + +
Sbjct: 20 SSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWN 79
Query: 60 EAIRLYEVNHEPELVI 75
A + N+E L I
Sbjct: 80 VAKEMLAENNEKFLNI 95
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 24.1 bits (53), Expect = 5.4
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65
P + + EE +V + L M L EA+RL+
Sbjct: 284 PHV-LQKAAEEA--------ARVLVDPVPSYKQVKQLKYVGMVLNEALRLW 325
>1efp_B ETF, protein (electron transfer flavoprotein); electron
transport, glutaric acidemia type II; HET: FAD AMP;
2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Length = 252
Score = 23.7 bits (52), Expect = 7.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 58 LEEAIRLYEVNHEPELVI 75
+EEAIRL E E++
Sbjct: 43 VEEAIRLKEKGQAEEIIA 60
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint
center for structural genomics, JCSG; HET: MSE FLC;
2.00A {Streptococcus agalactiae 2603V}
Length = 181
Score = 23.6 bits (51), Expect = 7.7
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 50 CLISTQMELEEAIRLYE 66
++ T + + + YE
Sbjct: 134 IVLDTPEKEKRSHFFYE 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,214,034
Number of extensions: 60013
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 18
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)