RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5166
         (76 letters)



>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 83

 Score =  112 bits (282), Expect = 3e-35
 Identities = 38/75 (50%), Positives = 58/75 (77%)

Query: 2  YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEA 61
            +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA
Sbjct: 6  AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEA 65

Query: 62 IRLYEVNHEPELVIH 76
           RLYE+N + EL+IH
Sbjct: 66 FRLYELNKDSELLIH 80


>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 43.6 bits (103), Expect = 4e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          + D++F   +K D TY  L+ ++    +  TD  F ++    +G    I T  ++   I+
Sbjct: 19 YKDDIFALMLKGDTTYKELRSKIAP--RIDTDN-FKLQTKLFDGSGEEIKTDSQVSNIIQ 75


>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1
          (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 41.7 bits (98), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 16 DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65
          + T+  ++  VK     +T     +K++DEE +   I++Q E EEA+++ 
Sbjct: 25 NTTWADIEAMVKVSFDLNT---IQIKYLDEENEEVSINSQGEYEEALKMA 71


>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24,
          C-terminal domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 77

 Score = 24.8 bits (54), Expect = 0.68
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 7  EVFITYIKPDITYDRLQEEVKEMCKFSTDQ----VFTVKWVDEEGDPCLISTQMELEEAI 62
          E+F   ++    +D L   +      + +     +  +K+ DE+GD  ++ +  +   A 
Sbjct: 2  EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAK 61

Query: 63 RLYEVNHEPELVI 75
           +   N+E  L I
Sbjct: 62 EMLAENNEKFLNI 74


>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 188

 Score = 24.9 bits (54), Expect = 0.93
 Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 33  STDQVFTVKWVDEEGDPCLISTQMELEEA 61
            + +  TV W+ ++G   L+   ++L   
Sbjct: 145 KSARPATV-WIAQDGSHHLVRASIDLGSG 172


>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus
          [TaxId: 1911]}
          Length = 277

 Score = 23.1 bits (48), Expect = 5.2
 Identities = 3/21 (14%), Positives = 10/21 (47%)

Query: 15 PDITYDRLQEEVKEMCKFSTD 35
          PDI    ++  + ++   + +
Sbjct: 2  PDIPLANVKAHLTQLSTIAAN 22


>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
          flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 22.7 bits (48), Expect = 5.8
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 41 KWVDEEGDPCLISTQME--LEEAIRLYEVNHEPELVIH 76
            V  +G    ++   E  +EEA+RL E     E++  
Sbjct: 24 TGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAV 61


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score = 22.6 bits (48), Expect = 6.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 4   FSDEVFITYIKP 15
            S+E F  +I P
Sbjct: 265 LSEEWFYAHIIP 276


>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236,
          N-terminal domain {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 99

 Score = 22.2 bits (47), Expect = 7.0
 Identities = 13/54 (24%), Positives = 18/54 (33%)

Query: 22 LQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVI 75
          ++E   EM       V         GD  +    +ELEE I L         V+
Sbjct: 6  VKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL 59


>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 89

 Score = 21.9 bits (46), Expect = 8.7
 Identities = 10/56 (17%), Positives = 17/56 (30%)

Query: 8  VFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +FI  +   I    L +         + +V   +   +        TQ   E AI 
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 66


>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44
          {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 95

 Score = 21.8 bits (46), Expect = 9.0
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)

Query: 40 VKWVDEEGDPCLISTQMELEEAIRLYEVNHEP 71
          V+ +           Q E E  +  ++V + P
Sbjct: 69 VRDLGTIESA-----QAETEALLLEHDVEYRP 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,948
Number of extensions: 12070
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 27
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)