Query psy5168
Match_columns 113
No_of_seqs 109 out of 1071
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 19:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0105 Ndk Nucleoside diphosp 100.0 2E-42 4.4E-47 227.8 9.0 108 5-112 2-109 (135)
2 PRK14542 nucleoside diphosphat 100.0 5.5E-42 1.2E-46 230.7 9.6 108 5-112 1-108 (137)
3 PRK14541 nucleoside diphosphat 100.0 2.7E-41 6E-46 228.1 9.5 108 5-112 1-108 (140)
4 PRK14545 nucleoside diphosphat 100.0 6.8E-41 1.5E-45 226.0 9.8 108 5-112 3-110 (139)
5 PTZ00093 nucleoside diphosphat 100.0 1.2E-40 2.7E-45 226.9 10.1 108 5-112 2-109 (149)
6 PRK14540 nucleoside diphosphat 100.0 1.4E-40 3.1E-45 223.3 10.1 108 5-112 2-109 (134)
7 PRK14543 nucleoside diphosphat 100.0 3.3E-40 7E-45 228.3 9.1 112 1-112 1-117 (169)
8 cd04415 NDPk7A Nucleoside diph 100.0 3.6E-40 7.8E-45 220.5 8.1 105 6-112 1-108 (131)
9 PRK00668 ndk mulitfunctional n 100.0 9.5E-40 2.1E-44 219.3 9.4 108 5-112 1-108 (134)
10 cd04413 NDPk_I Nucleoside diph 100.0 1.3E-39 2.7E-44 217.7 9.4 107 6-112 1-107 (130)
11 PLN02619 nucleoside-diphosphat 100.0 7.7E-40 1.7E-44 235.2 8.6 111 2-112 85-195 (238)
12 PLN02931 nucleoside diphosphat 100.0 1.3E-39 2.9E-44 226.7 9.2 110 3-112 27-139 (177)
13 cd04412 NDPk7B Nucleoside diph 100.0 1.9E-39 4.1E-44 217.8 8.6 107 6-112 1-111 (134)
14 cd04418 NDPk5 Nucleoside dipho 100.0 3.2E-39 6.9E-44 216.2 8.3 105 6-112 1-108 (132)
15 cd04414 NDPk6 Nucleoside dipho 100.0 1.5E-38 3.3E-43 213.6 8.7 107 6-112 1-111 (135)
16 cd00595 NDPk Nucleoside diphos 100.0 2.2E-38 4.7E-43 212.4 9.0 107 6-112 1-110 (133)
17 cd04416 NDPk_TX NDP kinase dom 100.0 1.3E-38 2.9E-43 213.2 7.5 106 6-112 1-109 (132)
18 PF00334 NDK: Nucleoside dipho 100.0 9.2E-39 2E-43 214.4 4.9 107 6-112 1-107 (135)
19 smart00562 NDK These are enzym 100.0 1.2E-37 2.5E-42 209.1 8.5 107 6-112 1-107 (135)
20 PRK14544 nucleoside diphosphat 100.0 3.1E-37 6.7E-42 215.6 9.9 108 5-112 3-143 (183)
21 KOG0888|consensus 100.0 6.9E-36 1.5E-40 203.4 4.1 109 5-113 5-116 (156)
22 PF14454 Prok_Ub: Prokaryotic 88.1 0.34 7.3E-06 28.6 1.5 42 43-93 23-64 (65)
23 TIGR03738 PRTRC_C PRTRC system 86.8 0.38 8.2E-06 28.4 1.2 43 42-93 21-63 (66)
24 COG1799 Uncharacterized protei 81.4 4.9 0.00011 28.0 5.0 51 4-58 71-121 (167)
25 PF04472 DUF552: Protein of un 65.5 18 0.00039 21.3 4.2 45 9-57 1-45 (73)
26 PHA02114 hypothetical protein 50.5 22 0.00048 22.9 2.9 35 8-42 84-118 (127)
27 PF06130 PduL: Propanediol uti 45.6 18 0.00039 21.6 1.8 20 35-54 4-23 (71)
28 PF13673 Acetyltransf_10: Acet 42.1 77 0.0017 19.1 5.7 46 7-56 67-115 (117)
29 PRK09283 delta-aminolevulinic 39.8 31 0.00066 26.6 2.7 46 11-58 161-206 (323)
30 cd00384 ALAD_PBGS Porphobilino 38.2 25 0.00053 27.0 2.0 46 11-58 153-198 (314)
31 COG1724 Predicted RNA binding 37.5 56 0.0012 19.3 3.0 20 22-41 9-28 (66)
32 cd04893 ACT_GcvR_1 ACT domains 37.1 75 0.0016 18.5 3.7 33 9-43 4-36 (77)
33 COG3473 Maleate cis-trans isom 35.0 65 0.0014 23.6 3.6 39 7-47 119-157 (238)
34 KOG0069|consensus 34.5 1.4E+02 0.003 23.2 5.6 49 4-57 160-209 (336)
35 PF03698 UPF0180: Uncharacteri 33.3 52 0.0011 20.1 2.5 25 16-41 5-29 (80)
36 KOG0173|consensus 32.8 85 0.0018 23.5 3.9 52 43-98 182-233 (271)
37 PRK00194 hypothetical protein; 32.7 83 0.0018 18.6 3.4 35 6-42 3-37 (90)
38 PRK13384 delta-aminolevulinic 32.7 38 0.00082 26.1 2.2 46 11-58 163-208 (322)
39 COG3978 Acetolactate synthase 32.6 29 0.00063 21.4 1.3 23 22-44 17-39 (86)
40 PF15323 Ashwin: Developmental 31.6 52 0.0011 23.9 2.6 42 10-56 3-44 (214)
41 cd04883 ACT_AcuB C-terminal AC 31.4 99 0.0021 17.1 3.9 14 24-37 56-69 (72)
42 cd04823 ALAD_PBGS_aspartate_ri 31.2 34 0.00075 26.3 1.8 46 11-58 158-203 (320)
43 PF04015 DUF362: Domain of unk 31.0 1.6E+02 0.0035 20.3 5.1 44 10-53 2-57 (206)
44 cd04875 ACT_F4HF-DF N-terminal 30.5 1.1E+02 0.0024 17.4 4.3 32 10-43 3-34 (74)
45 PF07576 BRAP2: BRCA1-associat 29.7 1.2E+02 0.0026 19.5 3.9 17 45-61 63-79 (110)
46 PF06399 GFRP: GTP cyclohydrol 29.3 80 0.0017 19.4 2.8 21 22-42 52-72 (83)
47 PF13788 DUF4180: Domain of un 29.1 1.2E+02 0.0025 19.8 3.8 42 18-59 54-98 (113)
48 PF01408 GFO_IDH_MocA: Oxidore 28.6 1.4E+02 0.0031 18.2 4.8 45 8-56 65-109 (120)
49 COG3453 Uncharacterized protei 28.3 1.9E+02 0.004 19.4 5.8 71 7-88 30-104 (130)
50 CHL00123 rps6 ribosomal protei 27.3 1.6E+02 0.0035 18.3 4.1 72 7-93 9-84 (97)
51 TIGR00166 S6 ribosomal protein 26.9 1.5E+02 0.0033 17.9 4.1 72 7-93 4-78 (93)
52 TIGR02990 ectoine_eutA ectoine 26.9 2E+02 0.0043 21.0 5.1 48 7-56 121-177 (239)
53 cd04906 ACT_ThrD-I_1 First of 26.4 1.5E+02 0.0032 17.6 3.9 17 22-38 55-71 (85)
54 PRK04019 rplP0 acidic ribosoma 25.5 2.9E+02 0.0064 21.1 6.0 88 7-104 23-111 (330)
55 KOG4621|consensus 25.2 27 0.00058 23.6 0.3 35 76-113 114-158 (167)
56 PF03162 Y_phosphatase2: Tyros 24.8 2.3E+02 0.005 19.3 6.0 73 7-93 34-117 (164)
57 PRK03094 hypothetical protein; 24.7 1E+02 0.0022 18.9 2.7 25 16-41 5-29 (80)
58 PRK07455 keto-hydroxyglutarate 24.7 2.4E+02 0.0053 19.5 5.4 47 6-54 12-58 (187)
59 cd00550 ArsA_ATPase Oxyanion-t 24.0 91 0.002 22.6 2.9 32 6-37 161-192 (254)
60 PF04339 DUF482: Protein of un 24.0 1E+02 0.0022 24.2 3.3 30 27-56 193-222 (370)
61 PF13732 DUF4162: Domain of un 23.9 1.6E+02 0.0034 17.0 4.1 26 22-48 53-78 (84)
62 PRK14165 winged helix-turn-hel 23.9 1E+02 0.0022 22.3 3.1 31 22-52 38-72 (217)
63 PF03800 Nuf2: Nuf2 family; I 23.6 28 0.00061 23.1 0.1 35 22-56 14-48 (146)
64 cd04880 ACT_AAAH-PDT-like ACT 23.4 1.5E+02 0.0033 16.7 4.0 31 10-42 3-33 (75)
65 cd04903 ACT_LSD C-terminal ACT 23.3 1.3E+02 0.0029 16.0 3.6 32 9-42 2-33 (71)
66 KOG2794|consensus 23.3 61 0.0013 24.7 1.8 45 11-57 174-218 (340)
67 COG0113 HemB Delta-aminolevuli 23.2 82 0.0018 24.3 2.5 46 11-58 166-211 (330)
68 cd04926 ACT_ACR_4 C-terminal 22.7 1.6E+02 0.0035 16.7 4.7 32 9-42 4-35 (72)
69 COG0505 CarA Carbamoylphosphat 22.7 1.3E+02 0.0028 23.7 3.6 61 19-97 187-252 (368)
70 PF13740 ACT_6: ACT domain; PD 22.7 1.3E+02 0.0028 17.4 2.9 27 19-45 13-39 (76)
71 COG1844 Uncharacterized protei 22.6 1.8E+02 0.0039 19.2 3.7 48 8-58 2-50 (125)
72 PF04273 DUF442: Putative phos 22.5 2.2E+02 0.0047 18.1 5.4 71 7-88 29-103 (110)
73 PRK15070 propanediol utilizati 22.5 80 0.0017 22.9 2.2 19 34-52 135-153 (211)
74 COG2243 CobF Precorrin-2 methy 22.3 2.7E+02 0.0058 20.5 5.0 57 21-82 42-100 (234)
75 cd04899 ACT_ACR-UUR-like_2 C-t 22.2 1.5E+02 0.0033 16.2 3.4 31 11-43 5-35 (70)
76 cd06355 PBP1_FmdD_like Peripla 21.9 3.4E+02 0.0074 20.2 6.8 45 6-50 133-178 (348)
77 cd00114 LIGANc NAD+ dependent 21.4 1.4E+02 0.0031 22.6 3.6 65 23-96 230-294 (307)
78 cd04872 ACT_1ZPV ACT domain pr 21.4 1.8E+02 0.0039 17.1 3.5 34 8-43 3-36 (88)
79 cd04905 ACT_CM-PDT C-terminal 21.3 1.8E+02 0.0039 16.7 4.7 33 8-42 3-35 (80)
80 PF13291 ACT_4: ACT domain; PD 21.2 1.7E+02 0.0036 16.8 3.2 25 19-43 17-41 (80)
81 PF03960 ArsC: ArsC family; I 21.1 2.2E+02 0.0047 17.6 4.5 35 23-57 10-46 (110)
82 KOG2456|consensus 21.0 1.6E+02 0.0034 23.8 3.8 70 9-82 134-214 (477)
83 COG1504 Uncharacterized conser 20.9 54 0.0012 21.5 1.0 53 42-94 47-110 (121)
84 PF07530 PRE_C2HC: Associated 20.4 1.5E+02 0.0032 17.3 2.8 21 23-43 2-22 (68)
No 1
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-42 Score=227.83 Aligned_cols=108 Identities=42% Similarity=0.648 Sum_probs=106.5
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||+++++++|+|+++++++||+|+++||+++++++|++||..|+++|||.+|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.+|.++|+|||..|.|||||++|+.+
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~ 109 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALS 109 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcc
Confidence 9999999999999999999999999975
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.5e-42 Score=230.71 Aligned_cols=108 Identities=37% Similarity=0.561 Sum_probs=105.8
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++++|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..|+|+|||+.||++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~ 108 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAES 108 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCc
Confidence 9999999999999999999999999986
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.7e-41 Score=228.08 Aligned_cols=108 Identities=31% Similarity=0.510 Sum_probs=105.7
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.+++||++|++||+|||+++++|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..|+|+|||+.||++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~ 108 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADS 108 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhccc
Confidence 9999999999999999999999999986
No 4
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=6.8e-41 Score=225.98 Aligned_cols=108 Identities=29% Similarity=0.488 Sum_probs=105.8
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
.|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.+++||++++++|+|||+++++|.|+|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..|+|+|||+.||++
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~ 110 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKS 110 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhccc
Confidence 9999999999999999999999999986
No 5
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.2e-40 Score=226.93 Aligned_cols=108 Identities=52% Similarity=0.900 Sum_probs=105.8
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||++++++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..|.|+|||+.||++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~ 109 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVD 109 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccc
Confidence 9999999999999999999999999986
No 6
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-40 Score=223.26 Aligned_cols=108 Identities=33% Similarity=0.552 Sum_probs=105.7
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
.|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.+++||+.|+++|+|||+++++|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..|.|+|||+.||++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~ 109 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLY 109 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhccc
Confidence 9999999999999999999999999986
No 7
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.3e-40 Score=228.30 Aligned_cols=112 Identities=29% Similarity=0.451 Sum_probs=108.5
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHH-----HhcCCCCCcccccccccCCeE
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYS-----DLATKPFFPGLVKYMSSGPVV 75 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~lv~~~~sgp~v 75 (113)
|+...|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||. +|.+++||++|++||+|||++
T Consensus 1 ~~~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~v 80 (169)
T PRK14543 1 MSTLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVF 80 (169)
T ss_pred CCCccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeE
Confidence 788999999999999999999999999999999999999999999999999995 788999999999999999999
Q ss_pred EEEEecCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 76 PMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 76 ~l~l~g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
+|+|.|+|||++||+++||+||..|.|+|||+.||++
T Consensus 81 alvl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~ 117 (169)
T PRK14543 81 VFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYH 117 (169)
T ss_pred EEEEECCCHHHHHHHHhCCCCccccCCCcchhhhccc
Confidence 9999999999999999999999999999999999975
No 8
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=3.6e-40 Score=220.52 Aligned_cols=105 Identities=29% Similarity=0.471 Sum_probs=102.3
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.+ +|+|+++|+++||.|+++|+++||+++|++||.+|.+++||++|+++|+|||+++++|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
++||+++||+||..| .|+|||+.||.+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~ 108 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTD 108 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhccc
Confidence 999999999999988 699999999986
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=9.5e-40 Score=219.27 Aligned_cols=108 Identities=43% Similarity=0.653 Sum_probs=105.5
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.+++||+.++++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|++||+++||+||..+.|+|||+.||++
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~ 108 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALS 108 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccc
Confidence 9999999999999999999999999986
No 10
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.3e-39 Score=217.69 Aligned_cols=107 Identities=44% Similarity=0.742 Sum_probs=104.7
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.++++|+||++|.++||.|+++|+++||+++|++||.+|.+++||++++++|+|||++++++.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
++||+++||+||+.|+|+|||+.||++
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~ 107 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALS 107 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhccc
Confidence 999999999999999999999999986
No 11
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=7.7e-40 Score=235.24 Aligned_cols=111 Identities=49% Similarity=0.781 Sum_probs=108.3
Q ss_pred CCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEec
Q psy5168 2 AEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWAR 81 (113)
Q Consensus 2 ~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g 81 (113)
...+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|
T Consensus 85 a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~G 164 (238)
T PLN02619 85 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEG 164 (238)
T ss_pred cchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 82 PEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 82 ~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
+|+|++||+++||+||..+.|+|||+.||++
T Consensus 165 enaV~~~R~LiGpTdP~~A~PgTIRg~fG~~ 195 (238)
T PLN02619 165 EGVIKYGRKLIGATDPQKSEPGTIRGDLAVV 195 (238)
T ss_pred CcHHHHHHHHhCCCCccccCCCcchhhhccc
Confidence 9999999999999999999999999999986
No 12
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.3e-39 Score=226.69 Aligned_cols=110 Identities=28% Similarity=0.408 Sum_probs=106.3
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+..|+||+|||||++.++++|+|+++|+++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++++|.|+
T Consensus 27 ~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~ 106 (177)
T PLN02931 27 SEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKE 106 (177)
T ss_pred CcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecC
Confidence 45799999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
|||++||+++||+||..| +|+|||+.||++
T Consensus 107 naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~ 139 (177)
T PLN02931 107 NAVSDWRTLIGPTDARKAKISHPNSIRAMCGLD 139 (177)
T ss_pred CHHHHHHHHhCCCChhhhccCCCCCchHHhcCc
Confidence 999999999999999988 499999999986
No 13
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.9e-39 Score=217.81 Aligned_cols=107 Identities=22% Similarity=0.364 Sum_probs=104.2
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCC-CCCcccccccccCCeEEEEEecCCc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATK-PFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~-~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
++||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++ ++|++++++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
|++||+++||+||..| .|+|||+.||++
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~ 111 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKD 111 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCc
Confidence 9999999999999987 699999999986
No 14
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=3.2e-39 Score=216.23 Aligned_cols=105 Identities=31% Similarity=0.406 Sum_probs=102.3
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|+++|+|||+++++|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
++||+++||+||..| .|+|||+.||.+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~ 108 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTD 108 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCc
Confidence 999999999999988 699999999986
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.5e-38 Score=213.63 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=101.6
Q ss_pred eeEEEEEcCcceecCch-HHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 6 ERTFLMIKPDGVQRGLV-GNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~-g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
|+||+|||||++.+++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999999876 56777789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
|++||+++||+||..| .|+|||+.||++
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~ 111 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLT 111 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCc
Confidence 9999999999999876 699999999986
No 16
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=2.2e-38 Score=212.37 Aligned_cols=107 Identities=41% Similarity=0.646 Sum_probs=103.5
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.++++|+|+++|+++||.|+++|+++||+++|++||.+|.++++|++++++|+|||+++++|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
++||+++||+||..| .|+|||+.||++
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~ 110 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTD 110 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCc
Confidence 999999999999955 599999999986
No 17
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=1.3e-38 Score=213.22 Aligned_cols=106 Identities=25% Similarity=0.449 Sum_probs=102.7
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.+ ++|+|+++|+++||.|+++|+++||+++|++||..|.++++|++++++|+|||+++++|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999977 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
++||+++||+||..| .|+|||+.||.+
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~ 109 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARD 109 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCc
Confidence 999999999999987 699999999986
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=9.2e-39 Score=214.44 Aligned_cols=107 Identities=37% Similarity=0.587 Sum_probs=99.3
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.++++|+||++|.++||.|+++|+++|++++|++||..+.++++|+.++++|+|||+++|++.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
++||+++||+||..|+|+|||+.||.+
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~ 107 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTD 107 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SS
T ss_pred HHHHHhcCCcchhhhccccchhceeec
Confidence 999999999999999999999999986
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=1.2e-37 Score=209.15 Aligned_cols=107 Identities=44% Similarity=0.708 Sum_probs=104.3
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
|+||+|||||++.++++|+||++|.++||.|++.|+++||+++|++||..+.++++|++++++|++||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 86 RPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
++||+++||+||..++|+|||+.||++
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~ 107 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLD 107 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhccc
Confidence 999999999999999999999999975
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.1e-37 Score=215.56 Aligned_cols=108 Identities=39% Similarity=0.590 Sum_probs=103.5
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh----------------------------
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL---------------------------- 56 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~---------------------------- 56 (113)
.|+||+|||||++.++++|+||++|.++||.|+++||+++|+++|++||.++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 5899999999999988899999999999999999999999999999999954
Q ss_pred -----cCCCCCcccccccccCCeEEEEEecCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 57 -----ATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 57 -----~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
.++++|+.|++||+||||++|++.|+|||++||+++||++|..|.|+|||+.||++
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~ 143 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSID 143 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhccc
Confidence 57889999999999999999999999999999999999999999999999999975
No 21
>KOG0888|consensus
Probab=100.00 E-value=6.9e-36 Score=203.41 Aligned_cols=109 Identities=57% Similarity=0.894 Sum_probs=106.2
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||++||||++.++++++||.++.++||.|++.|+++++++++++||.+++++|||+.++.||+|||++|+++.|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCC---CCCCCccccccCC
Q psy5168 85 QRPRRAQRRPLRPPNR---PDLGAPADLCEKE 113 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A---~p~slr~~~g~~~ 113 (113)
|+.||+++||++|..| .|+|||++||++.
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~ 116 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDD 116 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccC
Confidence 9999999999999988 7999999999863
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=88.09 E-value=0.34 Score=28.60 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcchhhHhhhC
Q psy5168 43 WPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRR 93 (113)
Q Consensus 43 ~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G 93 (113)
.+|+++++.||+.. |++|...-..||.+ .|+..+=.++..+|
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v----~~~~~vY~f~~~~G 64 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV----KGDVAVYTFRRAVG 64 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE----eCCEEEEEEEeccc
Confidence 57899999999876 88888877778854 55555555555554
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=86.84 E-value=0.38 Score=28.42 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.6
Q ss_pred ecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcchhhHhhhC
Q psy5168 42 VWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRR 93 (113)
Q Consensus 42 ~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G 93 (113)
-.+|+++++.||+.. |++|...-.+||.+ .++.++=+++..+|
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~----~~~~~~Y~F~~~~G 63 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV----KGGVQTYTFRRAVG 63 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE----eCCEEEEEEEEeec
Confidence 357899999999875 88888877778854 45555555666555
No 24
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.38 E-value=4.9 Score=28.02 Aligned_cols=51 Identities=8% Similarity=0.159 Sum_probs=40.9
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
....++++++|..+.. ..+|.+.|......++++.. |++++|+++.-...|
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRivDFlaG 121 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIVDFLAG 121 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHHHHhcc
Confidence 4568999999999988 78999999888777777655 689999998544443
No 25
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=65.51 E-value=18 Score=21.26 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=30.3
Q ss_pred EEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhc
Q psy5168 9 FLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLA 57 (113)
Q Consensus 9 l~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~ 57 (113)
+++++|..++. +.+|.+.|.+....|+++ -.|+.++++++.....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~Dfl~ 45 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILDFLS 45 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHHHh
Confidence 36889999987 789999998886666655 6678888888855443
No 26
>PHA02114 hypothetical protein
Probab=50.51 E-value=22 Score=22.90 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.2
Q ss_pred EEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
|+++--.-+++++-.=+++.+|++.||.+++.+.+
T Consensus 84 tivldvn~amsr~pwi~v~s~le~~g~~vvatqel 118 (127)
T PHA02114 84 TIVLDVNYAMSRAPWIKVISRLEEAGFNVVATQEL 118 (127)
T ss_pred eEEEEehhhhccCcHHHHHHHHHhcCceeeehhhh
Confidence 45555555677765568999999999999987654
No 27
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=45.59 E-value=18 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.8
Q ss_pred eEEEEEEecCCHHHHHHHHH
Q psy5168 35 KLVAMKFVWPSEELLKQHYS 54 (113)
Q Consensus 35 ~I~~~k~~~l~~~~a~~~y~ 54 (113)
.|++.+-++|++++|+.|+-
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 47889999999999999975
No 28
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=42.06 E-value=77 Score=19.05 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=29.9
Q ss_pred eEEEEEcCcceecCchHHHHHHHHH---CCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFED---KGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~---~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
-..+.|.|+.-.+|+...+++.+.+ .|+...... +...+..||...
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~~ 115 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRKL 115 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHHT
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHhC
Confidence 4567888988777743355555433 288877777 788889998753
No 29
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=39.82 E-value=31 Score=26.61 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=38.0
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
+|-|..+-.|+++.|-+.|.++||. ..-.+.-+...|..||...++
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHH
Confidence 5678877788899999999999994 566777788999999988754
No 30
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=38.23 E-value=25 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=37.2
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
+|-|..+-.|+++.|-+.|.++|| ...-.+.-+-..|..||...++
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 567887778889999999999999 4566677778889999887644
No 31
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=37.48 E-value=56 Score=19.26 Aligned_cols=20 Identities=40% Similarity=0.585 Sum_probs=17.3
Q ss_pred hHHHHHHHHHCCCeEEEEEE
Q psy5168 22 VGNIIKRFEDKGFKLVAMKF 41 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~ 41 (113)
..++|..|+..||..+..|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999998874
No 32
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=37.07 E-value=75 Score=18.52 Aligned_cols=33 Identities=9% Similarity=0.353 Sum_probs=26.5
Q ss_pred EEEEcCcceecCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 9 FLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 9 l~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
+-+.-||. .|++-.|-+.|.++|+.|...++..
T Consensus 4 ltv~g~Dr--~GiVa~vs~~la~~g~nI~d~~q~~ 36 (77)
T cd04893 4 ISALGTDR--PGILNELTRAVSESGCNILDSRMAI 36 (77)
T ss_pred EEEEeCCC--ChHHHHHHHHHHHcCCCEEEceeeE
Confidence 34566774 4778888999999999999999876
No 33
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.98 E-value=65 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHH
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEE 47 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~ 47 (113)
+.+.++.|-...- -...++.|..+||+|+..+-+-++.+
T Consensus 119 ~ri~vlTPY~~ev--n~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 119 QRISVLTPYIDEV--NQREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred ceEEEeccchhhh--hhHHHHHHHhCCeEEEEeeccCCccc
Confidence 4678888876543 35678889999999999887766544
No 34
>KOG0069|consensus
Probab=34.49 E-value=1.4e+02 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=39.5
Q ss_pred CceeEEEEEcCcceecCchH-HHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhc
Q psy5168 4 PKERTFLMIKPDGVQRGLVG-NIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLA 57 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g-~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~ 57 (113)
-..+|+.++-+. .+| .|-++|...|..|...+..+...+.+.++|..+.
T Consensus 160 ~~gK~vgilG~G-----~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~ 209 (336)
T KOG0069|consen 160 LEGKTVGILGLG-----RIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFV 209 (336)
T ss_pred ccCCEEEEecCc-----HHHHHHHHhhhhccceeeeecccCCchhhHHHhccccc
Confidence 345778887774 355 7789999999999999999999999988888543
No 35
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.27 E-value=52 Score=20.07 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=20.3
Q ss_pred ceecCchHHHHHHHHHCCCeEEEEEE
Q psy5168 16 GVQRGLVGNIIKRFEDKGFKLVAMKF 41 (113)
Q Consensus 16 ~~~~~~~g~Ii~~i~~~g~~I~~~k~ 41 (113)
|+..+ +..|-+.|+++||+++.+..
T Consensus 5 AVE~~-Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 5 AVEEG-LSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred EecCC-chHHHHHHHHCCCEEEecCC
Confidence 45666 46899999999999998873
No 36
>KOG0173|consensus
Probab=32.81 E-value=85 Score=23.50 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcchhhHhhhCCCCCC
Q psy5168 43 WPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPP 98 (113)
Q Consensus 43 ~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G~~~~~ 98 (113)
-|++++|.++-.+-.....|++ +.||.-+-+++..+..++-+|.+.-|..+.
T Consensus 182 dlt~eea~~Lv~eAi~AGi~nD----LgSGsnvdlcVI~~~~~~~lr~~~~~~~~~ 233 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIFND----LGSGSNVDLCVITKKGVEYLRNYSRPNEKG 233 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhccc----cCCCCceeEEEEeCCCccccccCCCCCCCc
Confidence 5899999999776644445555 468888877777788888888887766653
No 37
>PRK00194 hypothetical protein; Validated
Probab=32.69 E-value=83 Score=18.65 Aligned_cols=35 Identities=9% Similarity=0.276 Sum_probs=28.9
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
...+.+.-|| ..|.+.+|.+.|.+.|+.|..+...
T Consensus 3 ~~~ltv~g~D--rpGiva~vt~~la~~g~nI~~~~~~ 37 (90)
T PRK00194 3 KAIITVIGKD--KVGIIAGVSTVLAELNVNILDISQT 37 (90)
T ss_pred eEEEEEEcCC--CCCHHHHHHHHHHHcCCCEEehhhH
Confidence 3567788888 5677899999999999999997765
No 38
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=32.69 E-value=38 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=36.9
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
+|-|..+-.|+++.|-+.|.++||. ..-.+.-+-..|..||...++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHHH
Confidence 5678777788899999999999994 466677778889999887643
No 39
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=32.62 E-value=29 Score=21.39 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=19.3
Q ss_pred hHHHHHHHHHCCCeEEEEEEecC
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFVWP 44 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~~l 44 (113)
+..|+...+..||.++++.|...
T Consensus 17 leRVLrvtrhRGF~vcamnmt~~ 39 (86)
T COG3978 17 LERVLRVTRHRGFRVCAMNMTAA 39 (86)
T ss_pred HHHHHHHhhhcCeEEEEeecccc
Confidence 46788889999999999988653
No 40
>PF15323 Ashwin: Developmental protein
Probab=31.60 E-value=52 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 10 LMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 10 ~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
.++.|+-+.+ ..++..|.+.++.+-. ...+++++..++|..+
T Consensus 3 ~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~ 44 (214)
T PF15323_consen 3 LLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQH 44 (214)
T ss_pred cccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHH
Confidence 4678888765 6788888999888877 6778999999998876
No 41
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.36 E-value=99 Score=17.14 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCeEE
Q psy5168 24 NIIKRFEDKGFKLV 37 (113)
Q Consensus 24 ~Ii~~i~~~g~~I~ 37 (113)
.+++.|.++||.+.
T Consensus 56 ~~~~~L~~~G~~v~ 69 (72)
T cd04883 56 PIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHCCCeee
Confidence 55555555555543
No 42
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=31.15 E-value=34 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.411 Sum_probs=37.0
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
+|-|..+-.|+++.|-+.|.++||. ..-.+.-+-..|..||...++
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRD 203 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHH
Confidence 5667777788899999999999994 456667778889999887654
No 43
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=31.03 E-value=1.6e+02 Score=20.35 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEEcCcceec-----------CchHHHHHHHHHCCCe-EEEEEEecCCHHHHHHHH
Q psy5168 10 LMIKPDGVQR-----------GLVGNIIKRFEDKGFK-LVAMKFVWPSEELLKQHY 53 (113)
Q Consensus 10 ~liKPd~~~~-----------~~~g~Ii~~i~~~g~~-I~~~k~~~l~~~~a~~~y 53 (113)
|+|||+.... ..+..+++.+.+.|.. |+-...-.......++.+
T Consensus 2 V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~ 57 (206)
T PF04015_consen 2 VLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVF 57 (206)
T ss_pred EEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHH
Confidence 6788886632 1357889999999986 444444333323344443
No 44
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.50 E-value=1.1e+02 Score=17.38 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred EEEcCcceecCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 10 LMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 10 ~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
-+.-||. .|.+.+|-+.|.+.|+.|..+++..
T Consensus 3 ~v~g~D~--~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 3 TLSCPDR--PGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEcCCC--CCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4556664 4668889999999999999998874
No 45
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=29.70 E-value=1.2e+02 Score=19.48 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhcCCCC
Q psy5168 45 SEELLKQHYSDLATKPF 61 (113)
Q Consensus 45 ~~~~a~~~y~~~~~~~~ 61 (113)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 57789999999999877
No 46
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=29.33 E-value=80 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.8
Q ss_pred hHHHHHHHHHCCCeEEEEEEe
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
-..|+++|+..||+++++.-+
T Consensus 52 Pr~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 52 PRVVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHhcCeEEEEEecc
Confidence 357899999999999998654
No 47
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=29.10 E-value=1.2e+02 Score=19.80 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=25.3
Q ss_pred ecCchHHHHHHHHHCCCeEEEEEEecCC--HHHHHHH-HHHhcCC
Q psy5168 18 QRGLVGNIIKRFEDKGFKLVAMKFVWPS--EELLKQH-YSDLATK 59 (113)
Q Consensus 18 ~~~~~g~Ii~~i~~~g~~I~~~k~~~l~--~~~a~~~-y~~~~~~ 59 (113)
+.|+.|+|+|++...++++.-.--+.-. ..-.++| |+..++.
T Consensus 54 ~TglAGeiLQKf~NY~iklAivGD~s~~~~S~~l~dfi~EsN~G~ 98 (113)
T PF13788_consen 54 RTGLAGEILQKFVNYRIKLAIVGDFSAYATSKSLRDFIYESNRGN 98 (113)
T ss_pred hcchHHHHHHHHHhhceeEEEEEcccccccchhHHHHHHHhcCCC
Confidence 4577899999998888777666333222 3333444 5544443
No 48
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.59 E-value=1.4e+02 Score=18.19 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=36.5
Q ss_pred EEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
.+++.-|+.. | .+++....+.|..|...|-+.++.++++++....
T Consensus 65 ~V~I~tp~~~-h---~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 65 AVIIATPPSS-H---AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp EEEEESSGGG-H---HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEecCCcc-h---HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 4566666643 2 5788888899999999999999999999998754
No 49
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.35 E-value=1.9e+02 Score=19.35 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=52.4
Q ss_pred eEEEEEcCcceecCc--hHHHHHHHHHCCCeEEEEEE--ecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 7 RTFLMIKPDGVQRGL--VGNIIKRFEDKGFKLVAMKF--VWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 7 ~tl~liKPd~~~~~~--~g~Ii~~i~~~g~~I~~~k~--~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+|++=-.||.-..+. ...|-++.++.|+.+...-. ..+|++.++.|-....+ ..||+++.+=.|.
T Consensus 30 ksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e-----------aegPVlayCrsGt 98 (130)
T COG3453 30 KSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDE-----------AEGPVLAYCRSGT 98 (130)
T ss_pred ceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHH-----------hCCCEEeeecCCc
Confidence 456667888776554 34778889999988766554 46789999988776542 2599999999998
Q ss_pred Ccchhh
Q psy5168 83 EVQRPR 88 (113)
Q Consensus 83 nav~~~ 88 (113)
.+...|
T Consensus 99 Rs~~ly 104 (130)
T COG3453 99 RSLNLY 104 (130)
T ss_pred hHHHHH
Confidence 766655
No 50
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.35 E-value=1.6e+02 Score=18.26 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=40.7
Q ss_pred eEEEEEcCcceecC---chHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEec-C
Q psy5168 7 RTFLMIKPDGVQRG---LVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWAR-P 82 (113)
Q Consensus 7 ~tl~liKPd~~~~~---~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g-~ 82 (113)
.+++|++|+.-... .+..+-+.|.+.|-+|......= .+. +.--++-...|=-+.+.+.+ +
T Consensus 9 E~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG-~r~--------------LAY~I~k~~~G~Yv~~~f~~~~ 73 (97)
T CHL00123 9 ETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRG-KRK--------------LSYKINKYEDGIYIQMNYSGNG 73 (97)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeec-Cee--------------eeEEcCCCCEEEEEEEEEEECH
Confidence 68999999964432 23445555788899888776542 111 11112333445455556665 3
Q ss_pred CcchhhHhhhC
Q psy5168 83 EVQRPRRAQRR 93 (113)
Q Consensus 83 nav~~~r~l~G 93 (113)
.++..+...+.
T Consensus 74 ~~i~eler~lr 84 (97)
T CHL00123 74 KLVNSLEKALK 84 (97)
T ss_pred HHHHHHHHHhC
Confidence 46666655554
No 51
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=26.91 E-value=1.5e+02 Score=17.94 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=39.5
Q ss_pred eEEEEEcCcceec--CchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC-C
Q psy5168 7 RTFLMIKPDGVQR--GLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP-E 83 (113)
Q Consensus 7 ~tl~liKPd~~~~--~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~-n 83 (113)
.+++|++|+.-.. ..+..+-+.|.+.|-.|......= .+. +..-++-...|--+.+.+.++ +
T Consensus 4 E~~~Il~p~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G-~r~--------------LaY~I~k~~~G~Y~~~~f~~~~~ 68 (93)
T TIGR00166 4 EIIFLVRPTLSEEVKGQIERYKKVITLNGAEIVRSEDWG-KRR--------------LAYPIKKQLRAHYVLMNFSGEAQ 68 (93)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHHHhCCCEEEEEEeec-cee--------------cceEcCCCceEEEEEEEEEeCHH
Confidence 5789999986543 112333445678898888776542 111 111122234455566666653 5
Q ss_pred cchhhHhhhC
Q psy5168 84 VQRPRRAQRR 93 (113)
Q Consensus 84 av~~~r~l~G 93 (113)
++..+...+.
T Consensus 69 ~i~el~~~lr 78 (93)
T TIGR00166 69 VIKEFERTAR 78 (93)
T ss_pred HHHHHHHHhc
Confidence 6666655543
No 52
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.88 E-value=2e+02 Score=20.96 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=33.0
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEE---------EecCCHHHHHHHHHHh
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK---------FVWPSEELLKQHYSDL 56 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k---------~~~l~~~~a~~~y~~~ 56 (113)
+-++++.|..- ..-..+.+.+.+.||+++... +-+.+++...++-...
T Consensus 121 ~RIalvTPY~~--~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~ 177 (239)
T TIGR02990 121 RRISLLTPYTP--ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA 177 (239)
T ss_pred CEEEEECCCcH--HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh
Confidence 45788888532 223577888999999999984 4456666666665443
No 53
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.37 E-value=1.5e+02 Score=17.57 Aligned_cols=17 Identities=12% Similarity=0.604 Sum_probs=14.0
Q ss_pred hHHHHHHHHHCCCeEEE
Q psy5168 22 VGNIIKRFEDKGFKLVA 38 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~ 38 (113)
...+++.|.++|+.+..
T Consensus 55 ~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 55 LAELLEDLKSAGYEVVD 71 (85)
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 67889999999987764
No 54
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=25.45 E-value=2.9e+02 Score=21.08 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=43.8
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHC-CCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcc
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDK-GFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQ 85 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~-g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav 85 (113)
.+++++.-+.+....+.++.+.|... .|.+. ++...+.--...+.+.+..+.+++. |++. +++...|..
T Consensus 23 ~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~--------KNtL~~~Al~~~~~~~~~~L~~~l~-G~~a-lift~~dp~ 92 (330)
T PRK04019 23 PVVGIVDLEGIPARQLQEIRRKLRGKAELKVS--------KNTLIKRALEEAGEEDLEKLEDYLE-GQVA-LIFTNMNPF 92 (330)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEE--------ehHHHHHHHHhcCcccHHHHHhhcc-CCEE-EEEECCCHH
Confidence 35677777777655556666666653 12222 2222222111111133556666655 6644 445556666
Q ss_pred hhhHhhhCCCCCCCCCCCC
Q psy5168 86 RPRRAQRRPLRPPNRPDLG 104 (113)
Q Consensus 86 ~~~r~l~G~~~~~~A~p~s 104 (113)
...+.+..-.-|.-|++|+
T Consensus 93 ~v~k~l~~~~~~~~ak~G~ 111 (330)
T PRK04019 93 KLYKLLEKSKTPAPAKPGD 111 (330)
T ss_pred HHHHHHHHcCCcccCCCCC
Confidence 6555555544555554443
No 55
>KOG4621|consensus
Probab=25.17 E-value=27 Score=23.61 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=22.9
Q ss_pred EEEEecCCcchhhHhhhCCCCCCCCCCC----------CCccccccCC
Q psy5168 76 PMCWARPEVQRPRRAQRRPLRPPNRPDL----------GAPADLCEKE 113 (113)
Q Consensus 76 ~l~l~g~nav~~~r~l~G~~~~~~A~p~----------slr~~~g~~~ 113 (113)
-+++.|-|++..+-.+ .||+-|.|+ .-|..|||||
T Consensus 114 fiVi~GYd~a~~c~~~---ndPA~adpg~c~~Sik~fEeARkSfGTDE 158 (167)
T KOG4621|consen 114 FIVICGYDAARDCFEI---NDPASADPGHCRISIKCFEEARKSFGTDE 158 (167)
T ss_pred EEEEeccccccCeEEE---cCcccCCCcceeehhhHHHHHHhccCCCc
Confidence 4566787776655444 466666653 3577899886
No 56
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=24.82 E-value=2.3e+02 Score=19.27 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=35.8
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEec-------CCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEE
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW-------PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCW 79 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~-------l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l 79 (113)
+|++-+.|+... +...+...++|..+....+-. ++++.+.+......+. ...|+++.+.
T Consensus 34 KTII~L~~e~~~----~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~----------~n~PvLiHC~ 99 (164)
T PF03162_consen 34 KTIINLRPEPPS----QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP----------RNYPVLIHCN 99 (164)
T ss_dssp SEEEE--SS-------HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G----------GG-SEEEE-S
T ss_pred ceEEEecCCCCC----HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC----------CCCCEEEEeC
Confidence 577777776542 455567788998888888643 4455555444332221 2478888888
Q ss_pred ecCC----cchhhHhhhC
Q psy5168 80 ARPE----VQRPRRAQRR 93 (113)
Q Consensus 80 ~g~n----av~~~r~l~G 93 (113)
.|.+ +|..+|.+-|
T Consensus 100 ~G~~rTG~vvg~lRk~Q~ 117 (164)
T PF03162_consen 100 HGKDRTGLVVGCLRKLQG 117 (164)
T ss_dssp SSSSHHHHHHHHHHHHTT
T ss_pred CCCcchhhHHHHHHHHcC
Confidence 8876 4455565443
No 57
>PRK03094 hypothetical protein; Provisional
Probab=24.71 E-value=1e+02 Score=18.89 Aligned_cols=25 Identities=20% Similarity=0.620 Sum_probs=19.7
Q ss_pred ceecCchHHHHHHHHHCCCeEEEEEE
Q psy5168 16 GVQRGLVGNIIKRFEDKGFKLVAMKF 41 (113)
Q Consensus 16 ~~~~~~~g~Ii~~i~~~g~~I~~~k~ 41 (113)
+++.+ +..|-+.|.++|++++.++.
T Consensus 5 aVE~~-Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQS-LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecC-cHHHHHHHHHCCCEEEecCc
Confidence 45666 36788899999999998864
No 58
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.71 E-value=2.4e+02 Score=19.50 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=35.9
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHH
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYS 54 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~ 54 (113)
++.+.++....... .-++++.+.+.|+.+++.+.-..+..+..+...
T Consensus 12 ~~~~~v~r~~~~~~--~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~ 58 (187)
T PRK07455 12 HRAIAVIRAPDLEL--GLQMAEAVAAGGMRLIEITWNSDQPAELISQLR 58 (187)
T ss_pred CCEEEEEEcCCHHH--HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHH
Confidence 46678888876655 567889999999999999998887666544443
No 59
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=24.00 E-value=91 Score=22.60 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEE
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLV 37 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~ 37 (113)
..+++++.|+.....-+...++.+.+.|..+.
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~ 192 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVD 192 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence 35789999997766546677888888887553
No 60
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=23.99 E-value=1e+02 Score=24.16 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 27 KRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 27 ~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
+++.+.|++|....--.+++++...||.-+
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y 222 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLY 222 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 456788999999998899999887776655
No 61
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=23.91 E-value=1.6e+02 Score=17.04 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred hHHHHHHHHHCCCeEEEEEEecCCHHH
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFVWPSEEL 48 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~~l~~~~ 48 (113)
...|++.|.++|. |........|-++
T Consensus 53 ~~~ll~~l~~~g~-I~~f~~~~PSL~D 78 (84)
T PF13732_consen 53 ANELLQELIEKGI-IRSFEEEEPSLED 78 (84)
T ss_pred HHHHHHHHHhCCC-eeEEEEcCCCHHH
Confidence 4789999999999 9999998877664
No 62
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=23.87 E-value=1e+02 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=22.5
Q ss_pred hHHHHHHHHHCCCeEEE----EEEecCCHHHHHHH
Q psy5168 22 VGNIIKRFEDKGFKLVA----MKFVWPSEELLKQH 52 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~----~k~~~l~~~~a~~~ 52 (113)
+..++++|++.|+.-.. ...+.+|+.=...+
T Consensus 38 vsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll 72 (217)
T PRK14165 38 AARILKQLEDEGYITRTIVPRGQLITITEKGLDVL 72 (217)
T ss_pred HHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence 56789999999998664 46688887644333
No 63
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=23.55 E-value=28 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=25.3
Q ss_pred hHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
..+|++.|.+.|+.+...-..+.+++.+..+|..-
T Consensus 14 ~~eIv~~L~~~~~~~t~~dl~kPt~e~v~~ly~~~ 48 (146)
T PF03800_consen 14 PDEIVNCLQECGIPVTEEDLKKPTPEFVQKLYERF 48 (146)
T ss_dssp HHHHHHHHHHHT--HHHHC--G--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCHHHHcCCCHHHHHHHHHHH
Confidence 47899999999999888888999999999998754
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.42 E-value=1.5e+02 Score=16.74 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=22.9
Q ss_pred EEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 10 LMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 10 ~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
++.-|| ..|-+.+|++.+.+.|..|......
T Consensus 3 ~~~l~d--~pG~L~~vL~~f~~~~vni~~I~Sr 33 (75)
T cd04880 3 VFSLKN--KPGALAKALKVFAERGINLTKIESR 33 (75)
T ss_pred EEEeCC--cCCHHHHHHHHHHHCCCCEEEEEee
Confidence 333355 3455789999999999999999554
No 65
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.33 E-value=1.3e+02 Score=16.03 Aligned_cols=32 Identities=13% Similarity=0.393 Sum_probs=22.8
Q ss_pred EEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 9 FLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 9 l~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
+.+.-+|. .|.+++|.+.+.+.|..|..+...
T Consensus 2 l~i~~~d~--~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDK--PGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCC--CChHHHHHHHHHHcCcCeeeeEEE
Confidence 44455553 244789999999999999887653
No 66
>KOG2794|consensus
Probab=23.29 E-value=61 Score=24.68 Aligned_cols=45 Identities=18% Similarity=0.411 Sum_probs=35.7
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhc
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLA 57 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~ 57 (113)
++-|.-+-.|+++.|-+.|...||. ..-.+..+...+..||...+
T Consensus 174 vVapSDmmDgRV~aIk~aL~~~~l~--~vsvmSYsaKfas~fyGpFR 218 (340)
T KOG2794|consen 174 VVAPSDMMDGRVGAIKQALDAEGLQ--KVSVMSYSAKFASSFYGPFR 218 (340)
T ss_pred eecchHhhcchHHHHHHHHHHhccc--ceEEEeehhhhhhccccchH
Confidence 4566666678899999999999999 66677778888888887654
No 67
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=23.24 E-value=82 Score=24.30 Aligned_cols=46 Identities=22% Similarity=0.402 Sum_probs=36.2
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
||-|..+-.|.++.|-+.|.++||.=+. .+.-+...|..||...++
T Consensus 166 ivAPSdMMDGrV~aIR~aLd~ag~~~v~--IMsYsaKyASafYGPFRd 211 (330)
T COG0113 166 IVAPSDMMDGRVGAIREALDEAGFIDVP--IMSYSAKYASAFYGPFRD 211 (330)
T ss_pred eecccccccchHHHHHHHHHHcCCCcce--eeehhHHHhhhccccHHH
Confidence 6778888889999999999999986444 455677888888877654
No 68
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.75 E-value=1.6e+02 Score=16.75 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=25.5
Q ss_pred EEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 9 FLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 9 l~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
+.+.-|| ..|...+|...|.+.|+.|..++..
T Consensus 4 i~V~~~D--~~Gll~~i~~~l~~~~lnI~sa~i~ 35 (72)
T cd04926 4 LELRTED--RVGLLSDVTRVFRENGLTVTRAEIS 35 (72)
T ss_pred EEEEECC--ccCHHHHHHHHHHHCCcEEEEEEEe
Confidence 4556676 4466788999999999999999864
No 69
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=22.71 E-value=1.3e+02 Score=23.66 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=39.3
Q ss_pred cCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC-----CcchhhHhhhC
Q psy5168 19 RGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP-----EVQRPRRAQRR 93 (113)
Q Consensus 19 ~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~-----nav~~~r~l~G 93 (113)
-|....|++.|.+.|+.++-.-- .-+.++..++ .. + --|++.|| |+ .+|...++++|
T Consensus 187 ~GvK~nIlr~L~~rg~~vtVVP~-~t~~eeIl~~---~p-----D--GiflSNGP-------GDP~~~~~~i~~ik~l~~ 248 (368)
T COG0505 187 FGVKRNILRELVKRGCRVTVVPA-DTSAEEILAL---NP-----D--GIFLSNGP-------GDPAPLDYAIETIKELLG 248 (368)
T ss_pred cCccHHHHHHHHHCCCeEEEEcC-CCCHHHHHhh---CC-----C--EEEEeCCC-------CChhHHHHHHHHHHHHhc
Confidence 45456899999999999875432 2234433333 21 1 13677888 63 58888899998
Q ss_pred CCCC
Q psy5168 94 PLRP 97 (113)
Q Consensus 94 ~~~~ 97 (113)
..-|
T Consensus 249 ~~iP 252 (368)
T COG0505 249 TKIP 252 (368)
T ss_pred cCCC
Confidence 6544
No 70
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=22.68 E-value=1.3e+02 Score=17.38 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=21.4
Q ss_pred cCchHHHHHHHHHCCCeEEEEEEecCC
Q psy5168 19 RGLVGNIIKRFEDKGFKLVAMKFVWPS 45 (113)
Q Consensus 19 ~~~~g~Ii~~i~~~g~~I~~~k~~~l~ 45 (113)
.|.+..+-+.|.+.|..|..+++..+.
T Consensus 13 pGiv~~v~~~l~~~g~ni~d~~~~~~~ 39 (76)
T PF13740_consen 13 PGIVAAVTGVLAEHGCNIEDSRQAVLG 39 (76)
T ss_dssp TTHHHHHHHHHHCTT-EEEEEEEEEET
T ss_pred CcHHHHHHHHHHHCCCcEEEEEEEEEc
Confidence 356778899999999999999997643
No 71
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.58 E-value=1.8e+02 Score=19.20 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=33.2
Q ss_pred EEEEEcCcceecCchHHHHHHHHH-CCCeEEEEEEecCCHHHHHHHHHHhcC
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFED-KGFKLVAMKFVWPSEELLKQHYSDLAT 58 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~-~g~~I~~~k~~~l~~~~a~~~y~~~~~ 58 (113)
||++|.-|.+.+ +-.-+..|+. .|+.|.+ +--.+.++.|.+.+.+.-+
T Consensus 2 t~vliR~Ds~~K--il~ALaDleRyagiki~g-kPrii~p~~aD~~~~~ilG 50 (125)
T COG1844 2 TIVLIRADSYDK--ILTALADLERYAGIKIRG-KPRIIPPELADEILSSILG 50 (125)
T ss_pred eEEEEecCcHHH--HHHHHHHHHHhcCceeec-CCcccChhhHHHHHHHHHH
Confidence 799999998866 5555666654 4677665 4455788888777666543
No 72
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.53 E-value=2.2e+02 Score=18.13 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred eEEEEEcCcceecCc--hHHHHHHHHHCCCeEEEEEE--ecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 7 RTFLMIKPDGVQRGL--VGNIIKRFEDKGFKLVAMKF--VWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 7 ~tl~liKPd~~~~~~--~g~Ii~~i~~~g~~I~~~k~--~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+|++=+.||.-..+. ...+-....+.|+..+.+-. -.++++.+..|..... .+ .||+++.+-.|.
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~----------~~-~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE----------SL-PKPVLAHCRSGT 97 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH----------TT-TTSEEEE-SCSH
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH----------hC-CCCEEEECCCCh
Confidence 577888888654322 22344567888988877655 3566777777755443 22 489999998887
Q ss_pred Ccchhh
Q psy5168 83 EVQRPR 88 (113)
Q Consensus 83 nav~~~ 88 (113)
.+..-|
T Consensus 98 Ra~~l~ 103 (110)
T PF04273_consen 98 RASALW 103 (110)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 665555
No 73
>PRK15070 propanediol utilization phosphotransacylase; Provisional
Probab=22.46 E-value=80 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=17.3
Q ss_pred CeEEEEEEecCCHHHHHHH
Q psy5168 34 FKLVAMKFVWPSEELLKQH 52 (113)
Q Consensus 34 ~~I~~~k~~~l~~~~a~~~ 52 (113)
=.|++.|-++|++++|++|
T Consensus 135 GvIvA~RHIHm~p~dA~~~ 153 (211)
T PRK15070 135 GVIVAKRHIHMSPEDAEKF 153 (211)
T ss_pred cEEEEecccCCCHHHHHHh
Confidence 4689999999999999988
No 74
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=22.29 E-value=2.7e+02 Score=20.48 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=39.6
Q ss_pred chHHHHHHHHHCCCeEEEEEE-ecCC-HHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 21 LVGNIIKRFEDKGFKLVAMKF-VWPS-EELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 21 ~~g~Ii~~i~~~g~~I~~~k~-~~l~-~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+...|+......+..+..... +..+ ++..+++|.+... .+.+++..|-.++....|+
T Consensus 42 lAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a~-----~va~~l~~G~~VAf~~lGD 100 (234)
T COG2243 42 LAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAAA-----EVAAELEAGRDVAFLTLGD 100 (234)
T ss_pred hHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHHH-----HHHHHHHcCCeEEEEEccC
Confidence 456888888777776666554 5666 7888899887642 3556677777777777664
No 75
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.24 E-value=1.5e+02 Score=16.22 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=23.7
Q ss_pred EEcCcceecCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 11 liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
+.-|| ..|.+.+|.+.|.+.|+.|..+++..
T Consensus 5 v~~~d--~~gll~~i~~~l~~~~~~I~~~~~~~ 35 (70)
T cd04899 5 LTALD--RPGLLADVTRVLAELGLNIHSAKIAT 35 (70)
T ss_pred EEEcC--CccHHHHHHHHHHHCCCeEEEEEEEe
Confidence 34444 34567899999999999999998753
No 76
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=21.95 E-value=3.4e+02 Score=20.15 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=29.0
Q ss_pred eeEEEEEcCcc-eecCchHHHHHHHHHCCCeEEEEEEecCCHHHHH
Q psy5168 6 ERTFLMIKPDG-VQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLK 50 (113)
Q Consensus 6 e~tl~liKPd~-~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~ 50 (113)
-+.+++|-+|. +-......+.+.+.+.|++|+....+.....+..
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~ 178 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQ 178 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHH
Confidence 36788888773 3333234555668889999998776665544433
No 77
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=21.43 E-value=1.4e+02 Score=22.63 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcchhhHhhhCCCC
Q psy5168 23 GNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLR 96 (113)
Q Consensus 23 g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G~~~ 96 (113)
.+.++.|.+.||.+...-...-+.+++.+++..... ...-..|.+.|-|+-+ |- -..++.+|.|.
T Consensus 230 ~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~---~R~~l~y~iDGiViKv-----n~-~~~~~~lG~ts 294 (307)
T cd00114 230 SEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEIEA---KRDSLPYEIDGVVVKV-----DD-LALQRELGFTS 294 (307)
T ss_pred HHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHHHH---hhhcCCCCCCcEEEEE-----eC-HHHHHHhCccC
Confidence 578899999999999644444578888888876632 2233466666743322 11 34677888765
No 78
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.40 E-value=1.8e+02 Score=17.14 Aligned_cols=34 Identities=9% Similarity=0.306 Sum_probs=27.3
Q ss_pred EEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
.+-+.-|| +.|.+-+|-+.|.+.|+.|....+..
T Consensus 3 vl~i~g~D--~pGiva~vt~~la~~g~nI~~~~~~~ 36 (88)
T cd04872 3 VITVVGKD--RVGIVAGVSTKLAELNVNILDISQTI 36 (88)
T ss_pred EEEEEcCC--CCCHHHHHHHHHHHcCCCEEechhHh
Confidence 45567777 45778899999999999999997654
No 79
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.31 E-value=1.8e+02 Score=16.75 Aligned_cols=33 Identities=15% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
++.+.-||. .|.+.+|++.+.+.|..|......
T Consensus 3 sl~~~~~d~--~G~L~~il~~f~~~~ini~~i~s~ 35 (80)
T cd04905 3 SIVFTLPNK--PGALYDVLGVFAERGINLTKIESR 35 (80)
T ss_pred EEEEEECCC--CCHHHHHHHHHHHCCcCEEEEEEE
Confidence 455555663 455788999999999999988654
No 80
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=21.19 E-value=1.7e+02 Score=16.79 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.1
Q ss_pred cCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 19 RGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 19 ~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
.|++.+|.+.|.+.|..|..+....
T Consensus 17 ~GlL~dI~~~i~~~~~nI~~i~~~~ 41 (80)
T PF13291_consen 17 PGLLADITSVISENGVNIRSINART 41 (80)
T ss_dssp TTHHHHHHHHHHCSSSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeEE
Confidence 4678999999999999999998875
No 81
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.13 E-value=2.2e+02 Score=17.64 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEEEEEec--CCHHHHHHHHHHhc
Q psy5168 23 GNIIKRFEDKGFKLVAMKFVW--PSEELLKQHYSDLA 57 (113)
Q Consensus 23 g~Ii~~i~~~g~~I~~~k~~~--l~~~~a~~~y~~~~ 57 (113)
.+.++.+.++|..+....... +|.++..++.....
T Consensus 10 rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 10 RKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp HHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 578899999998888888876 99999999877664
No 82
>KOG2456|consensus
Probab=21.04 E-value=1.6e+02 Score=23.83 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=46.5
Q ss_pred EEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcc-----------cccccccCCeEEE
Q psy5168 9 FLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG-----------LVKYMSSGPVVPM 77 (113)
Q Consensus 9 l~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~-----------lv~~~~sgp~v~l 77 (113)
.++|||.-++.+ ...++..+..+=|.=...+.+.=-.++..++..+.=|.-||.. ..+|+| -+.|
T Consensus 134 ~VVlKPSEls~n-~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL~~rfD~IfyTGsp~VgkIim~aAaKhLT---PvtL 209 (477)
T KOG2456|consen 134 AVVLKPSELSPN-TAKLLAKLLPQYLDQDLIRVVNGGVPETTELLKQRFDHIFYTGSPRVGKIIMAAAAKHLT---PVTL 209 (477)
T ss_pred EEEechhhcChh-HHHHHHHHHHHhcCcceEEEecCCCchHHHHHHhhccEEEecCCchHHHHHHHHHHhcCC---cEEE
Confidence 588999998765 6677777665556666777777677777777776544444432 124444 5678
Q ss_pred EEecC
Q psy5168 78 CWARP 82 (113)
Q Consensus 78 ~l~g~ 82 (113)
+|-|.
T Consensus 210 ELGGK 214 (477)
T KOG2456|consen 210 ELGGK 214 (477)
T ss_pred EcCCC
Confidence 88764
No 83
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=54 Score=21.50 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=32.1
Q ss_pred ecCCHHHHHHHHHHhcCC-----CCC------cccccccccCCeEEEEEecCCcchhhHhhhCC
Q psy5168 42 VWPSEELLKQHYSDLATK-----PFF------PGLVKYMSSGPVVPMCWARPEVQRPRRAQRRP 94 (113)
Q Consensus 42 ~~l~~~~a~~~y~~~~~~-----~~~------~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G~ 94 (113)
-.++.++++++|....+. ..+ +...+++.+-.|-+.++.-+.|+++|.++-|.
T Consensus 47 Hkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 47 HKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred cccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 456788888887754321 011 11123344444666667778899999998886
No 84
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.43 E-value=1.5e+02 Score=17.28 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEEEec
Q psy5168 23 GNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 23 g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
..|.+.|.+.||.+..+.-++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~ 22 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMH 22 (68)
T ss_pred HHHHHHHHHcCCceEEEEccc
Confidence 368899999999999877665
Done!