Query psy5168
Match_columns 113
No_of_seqs 109 out of 1071
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:06:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 1.5E-44 5E-49 243.9 7.3 109 4-112 6-114 (145)
2 3evo_A NDP kinase, NDK, nucleo 100.0 6.9E-44 2.4E-48 241.0 7.8 110 3-112 4-114 (146)
3 3l7u_A Nucleoside diphosphate 100.0 6.8E-44 2.3E-48 246.1 7.1 112 1-112 20-131 (172)
4 3mpd_A Nucleoside diphosphate 100.0 8.2E-44 2.8E-48 241.8 7.2 110 3-112 3-112 (151)
5 3q8u_A Nucleoside diphosphate 100.0 1.2E-43 4.2E-48 242.1 7.6 108 5-112 1-108 (157)
6 1wkj_A Nucleoside diphosphate 100.0 1.9E-43 6.4E-48 236.9 7.2 108 5-112 1-108 (137)
7 1xiq_A Nucleoside diphosphate 100.0 4.2E-43 1.4E-47 239.5 8.6 110 3-112 7-116 (157)
8 3b54_A NDK, NDP kinase, nucleo 100.0 9.5E-44 3.2E-48 243.6 5.4 112 1-112 9-120 (161)
9 1k44_A Nucleoside diphosphate 100.0 3.7E-43 1.3E-47 235.2 7.8 108 5-112 2-110 (136)
10 4fkx_A NDK B, nucleoside dipho 100.0 2.6E-43 9E-48 241.1 6.3 109 4-112 10-118 (161)
11 2hur_A NDK, nucleoside diphosp 100.0 5.1E-43 1.7E-47 236.0 7.3 108 5-112 2-109 (142)
12 3r9l_A Nucleoside diphosphate 100.0 3.4E-43 1.1E-47 239.6 6.3 108 5-112 7-114 (155)
13 3fkb_A NDP kinase, NDK, nucleo 100.0 3.5E-43 1.2E-47 239.5 6.3 109 4-112 7-115 (155)
14 3ztp_A Nucleoside diphosphate 100.0 1.5E-43 5.1E-48 238.6 4.3 108 5-112 3-113 (142)
15 1s57_A Nucleoside diphosphate 100.0 8.1E-43 2.8E-47 237.5 7.5 110 3-112 3-112 (153)
16 1nhk_R Nucleoside diphosphate 100.0 5.3E-43 1.8E-47 236.3 6.4 108 5-112 2-109 (144)
17 1u8w_A Nucleoside diphosphate 100.0 7.2E-43 2.5E-47 236.8 6.6 108 5-112 1-108 (149)
18 1pku_A Nucleoside diphosphate 100.0 5.9E-43 2E-47 237.5 6.1 109 4-112 1-109 (150)
19 2vu5_A Nucleoside diphosphate 100.0 6.7E-43 2.3E-47 236.8 6.2 108 5-112 1-108 (148)
20 2az3_A Nucleoside diphosphate 100.0 9.8E-43 3.3E-47 239.2 6.8 112 1-112 4-115 (164)
21 3bbb_A Nucleoside diphosphate 100.0 1.4E-42 4.7E-47 235.9 6.5 109 4-112 2-110 (151)
22 2dxe_A Nucleoside diphosphate 100.0 1.2E-42 4.2E-47 238.1 6.1 110 3-112 5-114 (160)
23 1ehw_A NDPK H4, nucleoside dip 100.0 1.4E-42 4.9E-47 237.8 6.5 109 4-112 23-131 (162)
24 3js9_A Nucleoside diphosphate 100.0 1.4E-42 4.7E-47 236.7 6.0 110 3-112 7-116 (156)
25 1nb2_A Nucleoside diphosphate 100.0 9.7E-43 3.3E-47 236.4 4.9 108 5-112 2-109 (150)
26 1zs6_A Nucleoside diphosphate 100.0 2E-42 6.9E-47 238.6 6.2 110 3-112 19-128 (169)
27 1w7w_A Nucleoside diphosphate 100.0 4.5E-42 1.5E-46 239.1 6.8 110 3-112 30-139 (182)
28 4dz6_A Nucleoside diphosphate 100.0 2.6E-42 8.7E-47 241.5 3.4 112 1-112 22-138 (190)
29 1xqi_A Nucleoside diphosphate 100.0 1.4E-39 4.8E-44 228.8 3.8 108 5-112 15-155 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 8.9E-28 3.1E-32 181.5 7.9 91 3-98 233-323 (352)
31 3p04_A Uncharacterized BCR; SE 83.0 1.6 5.5E-05 26.2 3.8 47 6-56 4-50 (87)
32 3j21_k Acidic ribosomal protei 58.0 25 0.00086 26.0 5.9 88 7-101 23-113 (339)
33 3dfe_A Putative PII-like signa 49.8 12 0.00041 23.1 2.6 37 1-39 2-38 (111)
34 1u8s_A Glycine cleavage system 42.6 64 0.0022 21.1 5.5 34 7-42 7-40 (192)
35 3nrb_A Formyltetrahydrofolate 39.4 66 0.0023 23.0 5.5 40 1-42 2-41 (287)
36 1zpv_A ACT domain protein; str 35.4 60 0.0021 18.1 5.8 38 4-43 3-40 (91)
37 2an1_A Putative kinase; struct 32.4 49 0.0017 23.2 3.8 38 1-38 1-39 (292)
38 3bkw_A MLL3908 protein, S-aden 29.4 1E+02 0.0035 20.1 4.9 29 22-50 194-222 (243)
39 2jwk_A Protein TOLR; periplasm 27.8 28 0.00097 18.9 1.6 28 8-35 46-74 (74)
40 3i5g_C Myosin catalytic light 27.7 11 0.00038 24.0 -0.3 44 23-74 105-154 (159)
41 1cqm_A Ribosomal protein S6; a 27.0 92 0.0031 18.5 3.9 35 7-41 5-42 (101)
42 2j5a_A 30S ribosomal protein S 26.7 76 0.0026 19.2 3.5 35 7-41 11-48 (110)
43 1jg5_A GTP cyclohydrolase I fe 25.6 79 0.0027 18.5 3.2 21 22-42 52-72 (83)
44 2fi0_A Conserved domain protei 25.4 57 0.0019 18.6 2.6 17 22-38 63-79 (81)
45 2nyi_A Unknown protein; protei 24.7 1.5E+02 0.0052 19.4 5.1 36 7-44 94-129 (195)
46 3a1y_G Acidic ribosomal protei 24.6 1.5E+02 0.005 21.1 5.2 79 7-89 23-101 (284)
47 2vs7_A I-DMOI, homing endonucl 23.9 61 0.0021 21.7 2.9 30 72-102 158-187 (199)
48 1whz_A Hypothetical protein; a 23.1 86 0.0029 17.1 3.0 18 22-39 7-24 (70)
49 3lte_A Response regulator; str 23.0 97 0.0033 17.8 3.5 49 1-56 1-49 (132)
50 3jsy_A Acidic ribosomal protei 21.8 75 0.0026 21.7 3.1 77 8-92 21-100 (213)
51 3ff4_A Uncharacterized protein 21.8 79 0.0027 19.5 2.9 35 4-38 2-36 (122)
52 3bbn_F Ribosomal protein S6; s 20.8 1.3E+02 0.0045 20.0 4.0 83 7-95 66-152 (168)
53 1nkz_B Light-harvesting protei 20.7 70 0.0024 16.3 2.0 13 44-56 3-15 (41)
54 1u8s_A Glycine cleavage system 20.5 1.8E+02 0.0062 18.7 5.7 37 7-45 94-130 (192)
55 4h89_A GCN5-related N-acetyltr 20.1 1.6E+02 0.0055 18.0 5.2 47 10-56 94-144 (173)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=1.5e-44 Score=243.85 Aligned_cols=109 Identities=31% Similarity=0.499 Sum_probs=107.0
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
.+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+|
T Consensus 6 ~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~ 85 (145)
T 4hr2_A 6 ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGED 85 (145)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred hHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||.+|+|+|||++||++
T Consensus 86 aV~~~R~l~G~tdp~~A~pgtIR~~fg~~ 114 (145)
T 4hr2_A 86 AILKNRDLMGATDPKKAEKGTIRADFADS 114 (145)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCSB
T ss_pred cHhHHhhccCCCCcccCCCCCcHHHhcCC
Confidence 99999999999999999999999999986
No 2
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=6.9e-44 Score=240.99 Aligned_cols=110 Identities=29% Similarity=0.530 Sum_probs=106.5
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecC-CHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEec
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWP-SEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWAR 81 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l-~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g 81 (113)
.++|+||+|||||++.++++|+||++|+++||.|+++|++++ |+++|++||.+|.+++||+.|++||+||||++++|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 568999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 82 PEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 82 ~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
+|||+.||+++|||||..|+|+|||+.||++
T Consensus 84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~ 114 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASAPGTIRGDLAND 114 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCS
T ss_pred CCHHHHHHHHcCCCCcccCCCCChHHHhCCC
Confidence 9999999999999999999999999999986
No 3
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=246.12 Aligned_cols=112 Identities=53% Similarity=0.884 Sum_probs=108.7
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEe
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWA 80 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~ 80 (113)
|.+++|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.++.++|||++|++||+||||++|+|+
T Consensus 20 ~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvle 99 (172)
T 3l7u_A 20 HMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE 99 (172)
T ss_dssp -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEE
T ss_pred hcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEe
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 81 RPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 81 g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+|||+.||+++|||||..|+|+|||++||++
T Consensus 100 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~ 131 (172)
T 3l7u_A 100 GLNVVKTGRVMLGETNPADSKPGTIRGDFCIQ 131 (172)
T ss_dssp STTHHHHHHHHHCCSSTTTCCTTSHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCChhhcCCCChhHHhcCC
Confidence 99999999999999999999999999999976
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=8.2e-44 Score=241.81 Aligned_cols=110 Identities=38% Similarity=0.597 Sum_probs=106.5
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+.+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|.++|||++|++||+||||++|+|+|+
T Consensus 3 ~~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (151)
T 3mpd_A 3 GSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGK 82 (151)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||++||++
T Consensus 83 naV~~~R~l~G~t~p~~a~PgtiR~~fg~~ 112 (151)
T 3mpd_A 83 DAVSIGRKLIGETNPQAASVGTIRGDYGVS 112 (151)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCS
T ss_pred cHHHHHHHHhCCCChhhcCCCChhHHhCCC
Confidence 999999999999999999999999999976
No 5
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.2e-43 Score=242.10 Aligned_cols=108 Identities=37% Similarity=0.572 Sum_probs=106.1
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++.++|||++|++||+||||++++|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||.+|+|+|||++||++
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~ 108 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLT 108 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCC
Confidence 9999999999999999999999999976
No 6
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.9e-43 Score=236.93 Aligned_cols=108 Identities=45% Similarity=0.785 Sum_probs=106.0
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~ 108 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATT 108 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCC
Confidence 9999999999999999999999999986
No 7
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=4.2e-43 Score=239.53 Aligned_cols=110 Identities=47% Similarity=0.860 Sum_probs=106.6
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
-.+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.++.++|||++|++||+||||++++|+|+
T Consensus 7 ~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 86 (157)
T 1xiq_A 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGV 86 (157)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEEST
T ss_pred chhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||+.||++
T Consensus 87 naV~~~R~l~G~T~p~~A~pgtIR~~fg~~ 116 (157)
T 1xiq_A 87 DMVKQGRKLIGETNPLTSNTGTIRGDFCLE 116 (157)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred cchHHHHHHcCCCCCCcCCCCChHHHhCCC
Confidence 999999999999999999999999999986
No 8
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-44 Score=243.61 Aligned_cols=112 Identities=43% Similarity=0.760 Sum_probs=102.5
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEe
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWA 80 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~ 80 (113)
|++..|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.++.++|||++|++||+||||++++|+
T Consensus 9 ~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 88 (161)
T 3b54_A 9 MSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWE 88 (161)
T ss_dssp -CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEE
T ss_pred cccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 81 RPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 81 g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+|||+.||+++|||||..|+|+|||+.||++
T Consensus 89 g~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 120 (161)
T 3b54_A 89 GKDVVRQGRTILGATNPLGSAPGTIRGDFGID 120 (161)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCB
T ss_pred ccChHHHHHHHhCCCCcccCCCCChHHHhcCC
Confidence 99999999999999999999999999999986
No 9
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=3.7e-43 Score=235.24 Aligned_cols=108 Identities=34% Similarity=0.561 Sum_probs=106.1
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCC-CCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPP-NRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~-~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||. .|+|+|||+.||++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~ 110 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALE 110 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCC
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCC
Confidence 99999999999999 99999999999986
No 10
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=2.6e-43 Score=241.10 Aligned_cols=109 Identities=50% Similarity=0.846 Sum_probs=106.5
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
..|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.++.++|||++|++||+||||++++|+|+|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 89 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLG 89 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||..|+|+|||++||++
T Consensus 90 aV~~~R~l~GpTdp~~A~PgTIR~~fg~~ 118 (161)
T 4fkx_A 90 VVKGGRVLLGATNPADSLPGTIRGDFAVD 118 (161)
T ss_dssp HHHHHHHHHCCSSGGGCCTTSHHHHHCCB
T ss_pred hHHHHHHHhcCCChhhcCCCChhHhhCCC
Confidence 99999999999999999999999999986
No 11
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=5.1e-43 Score=236.00 Aligned_cols=108 Identities=35% Similarity=0.586 Sum_probs=106.1
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~ 109 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADS 109 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSS
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCC
Confidence 9999999999999999999999999986
No 12
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=3.4e-43 Score=239.60 Aligned_cols=108 Identities=50% Similarity=0.865 Sum_probs=79.4
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||++||++
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~ 114 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGID 114 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCS
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCC
Confidence 9999999999999999999999999976
No 13
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=3.5e-43 Score=239.51 Aligned_cols=109 Identities=42% Similarity=0.711 Sum_probs=106.7
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
.+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||++++|+|+|
T Consensus 7 ~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 86 (155)
T 3fkb_A 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKG 86 (155)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||..|+|+|||++||++
T Consensus 87 aV~~~R~l~G~t~p~~a~PgtIR~~fg~~ 115 (155)
T 3fkb_A 87 VVASARLMIGVTNPLASAPGSIRGDFGVD 115 (155)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCB
T ss_pred HHHHHHHhcCCCChhhcCCCChhHHhCCC
Confidence 99999999999999999999999999976
No 14
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=1.5e-43 Score=238.58 Aligned_cols=108 Identities=30% Similarity=0.516 Sum_probs=106.2
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCC---CCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNR---PDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A---~p~slr~~~g~~ 112 (113)
|+.||+++|||||..| +|+|||++||++
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~ 113 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTD 113 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCS
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCC
Confidence 9999999999999999 899999999986
No 15
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=8.1e-43 Score=237.50 Aligned_cols=110 Identities=45% Similarity=0.762 Sum_probs=107.3
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
+.+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||++++|+|+
T Consensus 3 ~~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (153)
T 1s57_A 3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGV 82 (153)
T ss_dssp CCCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEET
T ss_pred cccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||+.||++
T Consensus 83 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 112 (153)
T 1s57_A 83 GVVASARKLIGKTDPLQAEPGTIRGDLAVQ 112 (153)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCB
T ss_pred cHHHHHHHHhCCCCccccCCcchHHHhcCC
Confidence 999999999999999999999999999986
No 16
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=5.3e-43 Score=236.34 Aligned_cols=108 Identities=34% Similarity=0.574 Sum_probs=106.1
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~ 109 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATS 109 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCS
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCC
Confidence 9999999999999999999999999986
No 17
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=7.2e-43 Score=236.84 Aligned_cols=108 Identities=43% Similarity=0.733 Sum_probs=106.1
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~ 108 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAID 108 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCS
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCC
Confidence 9999999999999999999999999986
No 18
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=5.9e-43 Score=237.52 Aligned_cols=109 Identities=49% Similarity=0.808 Sum_probs=106.7
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
++|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++|||+.|++||+||||++++|+|+|
T Consensus 1 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~ 80 (150)
T 1pku_A 1 RMEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKD 80 (150)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTT
T ss_pred CceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||..|+|+|||+.||++
T Consensus 81 aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 109 (150)
T 1pku_A 81 VVATGRRIIGATRPWEAAPGTIRADYAVE 109 (150)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCSB
T ss_pred hHHHHHHHhCCCCcccCCCCChHHHhCCC
Confidence 99999999999999999999999999986
No 19
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=6.7e-43 Score=236.84 Aligned_cols=108 Identities=41% Similarity=0.705 Sum_probs=106.0
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++|||++|++||+||||++++|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~ 108 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVT 108 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCC
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCC
Confidence 9999999999999999999999999986
No 20
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=9.8e-43 Score=239.20 Aligned_cols=112 Identities=41% Similarity=0.742 Sum_probs=107.3
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEe
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWA 80 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~ 80 (113)
|+..+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||++++|+
T Consensus 4 l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 83 (164)
T 2az3_A 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWE 83 (164)
T ss_dssp ---CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 81 RPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 81 g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+|||+.||+++|||||..|+|+|||+.||++
T Consensus 84 g~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 115 (164)
T 2az3_A 84 GADATRQVRQLMGATDAQDAAPGTIRGDYGND 115 (164)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCC
T ss_pred cccHHHHHHHHhCCCCccccCCCcchhhhccc
Confidence 99999999999999999999999999999986
No 21
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=1.4e-42 Score=235.94 Aligned_cols=109 Identities=58% Similarity=0.942 Sum_probs=106.8
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
.+|+||+|||||++.++++|+||++|+++||.|+++||+++++++|++||.+|.+++||+.|++||+||||++++|+|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||..|+|+|||+.||++
T Consensus 82 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 110 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSKPGTIRGDFCIQ 110 (151)
T ss_dssp HHHHHHHHHCCSSGGGCCTTSHHHHHCCB
T ss_pred HHHHHHHHhCCCCcccCCCCCcHHHhcCC
Confidence 99999999999999999999999999976
No 22
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.2e-42 Score=238.07 Aligned_cols=110 Identities=37% Similarity=0.646 Sum_probs=107.0
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
++.|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||+.|++||+||||++++|+|+
T Consensus 5 ~~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 84 (160)
T 2dxe_A 5 SETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGR 84 (160)
T ss_dssp -CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ccCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||+.||++
T Consensus 85 ~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~ 114 (160)
T 2dxe_A 85 YAVEVVRKMAGATDPKDAAPGTIRGDFGLE 114 (160)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCC
T ss_pred CHHHHHHHHhCCCCCCcCCCCChHHHhcCC
Confidence 999999999999999999999999999986
No 23
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.4e-42 Score=237.85 Aligned_cols=109 Identities=45% Similarity=0.787 Sum_probs=106.7
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCC
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
.+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.++.++|||++|++||+||||++++|+|+|
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 102 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYN 102 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 84 VQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
||+.||+++|||||..|+|+|||++||++
T Consensus 103 aV~~~R~l~G~T~p~~A~PgtIR~~fg~~ 131 (162)
T 1ehw_A 103 VVRASRAMIGHTDSAEAAPGTIRGDFSVH 131 (162)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCC
T ss_pred HHHHHHHHhCCCCCCCCCCCChHHHhCCC
Confidence 99999999999999999999999999986
No 24
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.4e-42 Score=236.69 Aligned_cols=110 Identities=42% Similarity=0.717 Sum_probs=106.5
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
-.+|+|++|||||++.++++|+||++|+++||.|+++|+++||+++|++||.++.++|||++|++||+||||++++|+|+
T Consensus 7 ~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~ 86 (156)
T 3js9_A 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGP 86 (156)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEET
T ss_pred cchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||++||+++|||||.+|+|+|||+.||++
T Consensus 87 naV~~~R~l~G~T~p~~A~PgTIR~~fg~~ 116 (156)
T 3js9_A 87 EAIKIGRNLVGLTSPVESAAGTIRGDFGVV 116 (156)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred chHHHHHHhcCCCCccccCCCCHHHHhCCC
Confidence 999999999999999999999999999976
No 25
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=9.7e-43 Score=236.44 Aligned_cols=108 Identities=42% Similarity=0.664 Sum_probs=106.2
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|.++|||+.|++||+||||++++|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 85 QRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 85 v~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|+.||+++|||||..|+|+|||+.||++
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~ 109 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVS 109 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCC
Confidence 9999999999999999999999999986
No 26
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2e-42 Score=238.64 Aligned_cols=110 Identities=53% Similarity=0.898 Sum_probs=107.6
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
..+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||.+|.++|||++|++||+||||++++|+|+
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 98 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGL 98 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||+.||++
T Consensus 99 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~ 128 (169)
T 1zs6_A 99 DVVRTSRALIGATNPADAPPGTIRGDFCIE 128 (169)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred CchHHHHHHhCCCCcccCCCCChHHHHcCC
Confidence 999999999999999999999999999986
No 27
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-42 Score=239.10 Aligned_cols=110 Identities=45% Similarity=0.759 Sum_probs=107.4
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
..+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++.++|||+.|++||+||||++++|+|+
T Consensus 30 ~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~ 109 (182)
T 1w7w_A 30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGE 109 (182)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred chhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 83 EVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 83 nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
|||+.||+++|||||..|+|+|||+.||++
T Consensus 110 naV~~~R~l~G~T~p~~A~PgTIR~~fg~~ 139 (182)
T 1w7w_A 110 GVITYGRKLIGATDPQKSAPGTIRGDLAVV 139 (182)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCS
T ss_pred cHHHHHHHHhCCCCCCCCCCCChHHHhCCC
Confidence 999999999999999999999999999976
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=2.6e-42 Score=241.50 Aligned_cols=112 Identities=29% Similarity=0.459 Sum_probs=108.1
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHH-----HhcCCCCCcccccccccCCeE
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYS-----DLATKPFFPGLVKYMSSGPVV 75 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~lv~~~~sgp~v 75 (113)
|+..+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++||. ++.+++||+.|++||+||||+
T Consensus 22 ~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvv 101 (190)
T 4dz6_A 22 MSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVF 101 (190)
T ss_dssp -CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEE
T ss_pred ccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEE
Confidence 445689999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEEEecCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 76 PMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 76 ~l~l~g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
+++|+|+|||+.||+++|||||.+|+|+|||++||++
T Consensus 102 amvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~ 138 (190)
T 4dz6_A 102 TFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYH 138 (190)
T ss_dssp EEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCC
T ss_pred EEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCC
Confidence 9999999999999999999999999999999999986
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=1.4e-39 Score=228.85 Aligned_cols=108 Identities=36% Similarity=0.502 Sum_probs=105.3
Q ss_pred ceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHH-------------H-----------------
Q psy5168 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHY-------------S----------------- 54 (113)
Q Consensus 5 ~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y-------------~----------------- 54 (113)
+|+||+|||||++.++++|+||++|+++||.|+++|++++|+++|++|| .
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 5999999999999999999999999999999999999999999999999 7
Q ss_pred ---HhcCCCCCcccccccccCCeEEEEEecCCcchhhHhhhCCCCCCCCCCCCCccccccC
Q psy5168 55 ---DLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112 (113)
Q Consensus 55 ---~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~~~r~l~G~~~~~~A~p~slr~~~g~~ 112 (113)
.|.+++||+.+++||+||||++++|+|+|||+.||+++|||||..|+|+|||+.||++
T Consensus 95 ~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~ 155 (195)
T 1xqi_A 95 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSID 155 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCC
T ss_pred ccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCc
Confidence 8888999999999999999999999999999999999999999999999999999986
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.94 E-value=8.9e-28 Score=181.47 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecC
Q psy5168 3 EPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARP 82 (113)
Q Consensus 3 ~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~ 82 (113)
...|+||+|||||++.++++|+||++|+++||.|+++||+++++++|++||++|. ++|++||+|||+++++|+|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 4569999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred CcchhhHhhhCCCCCC
Q psy5168 83 EVQRPRRAQRRPLRPP 98 (113)
Q Consensus 83 nav~~~r~l~G~~~~~ 98 (113)
|||+.||+++|+|+|.
T Consensus 308 ~av~~~R~l~g~t~pg 323 (352)
T 3bh7_B 308 GAVEVCQLIVNEIFNG 323 (352)
T ss_dssp THHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCC
Confidence 9999999999999973
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=83.04 E-value=1.6 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=38.9
Q ss_pred eeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 6 e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
...+++++|..+.. ..+|.+.|.+..-.|+++. .++.++|+++.-..
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivDF~ 50 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVDFA 50 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHh
Confidence 34689999999987 7899999999888888876 67999999985443
No 32
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.00 E-value=25 Score=25.99 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=50.4
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhc---CCCCCcccccccccCCeEEEEEecCC
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLA---TKPFFPGLVKYMSSGPVVPMCWARPE 83 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~---~~~~~~~lv~~~~sgp~v~l~l~g~n 83 (113)
..++|+.-+.+....+.++...+.+.|-.+.-.|-..+... ..... ..|.|..+.+++. ||+ ++.+.-.|
T Consensus 23 ~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~A-----l~~~~~~e~~~~l~~L~~~L~-G~~-~l~Ft~~d 95 (339)
T 3j21_k 23 PVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELA-----IKKVAQELGKPELEKLINYIE-GGA-GILVTTMN 95 (339)
T ss_dssp SEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHH-----HHHHHSSCCCSSSSSSSCCCC-TTE-EEEEESSC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHH-----HhcChhhhccccHHHHHHHhc-CCe-EEEEECCC
Confidence 46778888888777778888888887765443332222222 12221 2456778877775 774 44455556
Q ss_pred cchhhHhhhCCCCCCCCC
Q psy5168 84 VQRPRRAQRRPLRPPNRP 101 (113)
Q Consensus 84 av~~~r~l~G~~~~~~A~ 101 (113)
.++..+.+.....+.-|+
T Consensus 96 p~~v~k~l~~~~~~~~Ar 113 (339)
T 3j21_k 96 PFKLYKFLQQNRQPAPAK 113 (339)
T ss_dssp HHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHHHHcCCccccc
Confidence 555444444333333333
No 33
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=49.79 E-value=12 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEE
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAM 39 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~ 39 (113)
|+-.+-+--+||+|.-+.. +-+.|+.+--.|++|...
T Consensus 2 ~~~~mKkIeaIi~p~kl~~--V~~aL~~~Gv~G~TV~~v 38 (111)
T 3dfe_A 2 MSKRANKLVIVTEKVLLKK--VAKIIEEAGATGYTVVDT 38 (111)
T ss_dssp -CEEEEEEEEEEEGGGHHH--HHHHHHHHTCSCCEEEEE
T ss_pred CcCceEEEEEEECHHHHHH--HHHHHHHCCCCcEEEEec
Confidence 5666778889999987654 555555555568888886
No 34
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=42.57 E-value=64 Score=21.05 Aligned_cols=34 Identities=9% Similarity=0.361 Sum_probs=27.9
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
..+.++-|| +.|++-.|-..|.+.|+.|..+++.
T Consensus 7 ~~itv~~~D--rpGiva~vt~~La~~g~NI~d~~~~ 40 (192)
T 1u8s_A 7 LVITAVGTD--RPGICNEVVRLVTQAGCNIIDSRIA 40 (192)
T ss_dssp EEEEEEEEC--CTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEcCC--CCcHHHHHHHHHHHCCCCEEeeeee
Confidence 457778888 5677889999999999999998864
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=39.38 E-value=66 Score=23.04 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEe
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
|+......+-++-||- .|++.+|-+.|.+.|+.|....+.
T Consensus 2 ~~~~~~~vLtv~c~Dr--~GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 2 MNKNNQYVLSLACQDA--PGIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp --CTTEEEEEEEEECC--TTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCeEEEEEECCCC--CCHHHHHHHHHHHCCCCEEeeeee
Confidence 5555566788899985 477889999999999999998874
No 36
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=35.38 E-value=60 Score=18.15 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=31.0
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEec
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVW 43 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~ 43 (113)
.+...+-+.-|| ..|.+.+|.+.|.+.|..|....+..
T Consensus 3 ~~~~~l~v~~~D--rpGila~vt~~la~~~~NI~~i~~~~ 40 (91)
T 1zpv_A 3 AMKAIITVVGKD--KSGIVAGVSGKIAELGLNIDDISQTV 40 (91)
T ss_dssp CEEEEEEEEESC--CTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CceEEEEEEECC--CCCHHHHHHHHHHHcCCCEEEEEeEE
Confidence 345567788888 56778899999999999999998865
No 37
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=32.37 E-value=49 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=22.9
Q ss_pred CCCCceeEEEEEcCccee-cCchHHHHHHHHHCCCeEEE
Q psy5168 1 MAEPKERTFLMIKPDGVQ-RGLVGNIIKRFEDKGFKLVA 38 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~-~~~~g~Ii~~i~~~g~~I~~ 38 (113)
|...+.+..++.+|..-. .....++++.+.+.|+++.-
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~ 39 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIV 39 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 566677788889987321 22367889999999998754
No 38
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=29.36 E-value=1e+02 Score=20.07 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=24.3
Q ss_pred hHHHHHHHHHCCCeEEEEEEecCCHHHHH
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFVWPSEELLK 50 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~ 50 (113)
..++.+.++++||.++.......+++...
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 222 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFCPTDAQIT 222 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCHHHHH
T ss_pred HHHHHHHHHHcCCEeeeeccCCCchHhhh
Confidence 57888999999999999999888776543
No 39
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=27.79 E-value=28 Score=18.93 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=17.7
Q ss_pred EEEEEcCcc-eecCchHHHHHHHHHCCCe
Q psy5168 8 TFLMIKPDG-VQRGLVGNIIKRFEDKGFK 35 (113)
Q Consensus 8 tl~liKPd~-~~~~~~g~Ii~~i~~~g~~ 35 (113)
+-++|++|. +.++.+-.+++.++++|+.
T Consensus 46 ~~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 46 TLFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CCEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 346777774 3444456677777887763
No 40
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=27.66 E-value=11 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhc------CCCCCcccccccccCCe
Q psy5168 23 GNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLA------TKPFFPGLVKYMSSGPV 74 (113)
Q Consensus 23 g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~------~~~~~~~lv~~~~sgp~ 74 (113)
.++.+.+...|. .++.+++.++..... +.-.|+++++.|.+||.
T Consensus 105 ~el~~~l~~~g~--------~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 105 AEIRNVLKMLGE--------RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp HHHHHHHHHSSS--------CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCC--------CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 344455555553 578999999987542 24468888888999984
No 41
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=27.05 E-value=92 Score=18.49 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=22.6
Q ss_pred eEEEEEcCcceec---CchHHHHHHHHHCCCeEEEEEE
Q psy5168 7 RTFLMIKPDGVQR---GLVGNIIKRFEDKGFKLVAMKF 41 (113)
Q Consensus 7 ~tl~liKPd~~~~---~~~g~Ii~~i~~~g~~I~~~k~ 41 (113)
.+++|++|+.-.. ..+..+-+.|.++|-.|.....
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~ 42 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAI 42 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5788999984322 1234555667788888876553
No 42
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=26.73 E-value=76 Score=19.24 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=23.8
Q ss_pred eEEEEEcCcceec---CchHHHHHHHHHCCCeEEEEEE
Q psy5168 7 RTFLMIKPDGVQR---GLVGNIIKRFEDKGFKLVAMKF 41 (113)
Q Consensus 7 ~tl~liKPd~~~~---~~~g~Ii~~i~~~g~~I~~~k~ 41 (113)
.+++|++|+.-.. ..+..+-+.|.++|-.|.....
T Consensus 11 E~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~ 48 (110)
T 2j5a_A 11 ETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEED 48 (110)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5889999984322 2244556667888988877654
No 43
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=25.63 E-value=79 Score=18.52 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=17.6
Q ss_pred hHHHHHHHHHCCCeEEEEEEe
Q psy5168 22 VGNIIKRFEDKGFKLVAMKFV 42 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~k~~ 42 (113)
...++++|+..||+++.+.=+
T Consensus 52 Pr~VLnKLE~~G~rVvsmtGv 72 (83)
T 1jg5_A 52 PRIVLDKLECRGFRVLSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHhccCeEEEEEecC
Confidence 467899999999999988643
No 44
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=25.45 E-value=57 Score=18.61 Aligned_cols=17 Identities=18% Similarity=0.716 Sum_probs=14.6
Q ss_pred hHHHHHHHHHCCCeEEE
Q psy5168 22 VGNIIKRFEDKGFKLVA 38 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~ 38 (113)
+..+++.|.+.||+++.
T Consensus 63 ~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 63 MDKIVRTLEANGYEVIG 79 (81)
T ss_dssp HHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHcCCEeeC
Confidence 46899999999999873
No 45
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=24.74 E-value=1.5e+02 Score=19.41 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.3
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecC
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWP 44 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l 44 (113)
..+-++-|| +.|++.+|-+.|.+.|+.|..++....
T Consensus 94 ~iltv~g~D--rpGiva~Vt~~La~~g~nI~~~~~~t~ 129 (195)
T 2nyi_A 94 YELYVEGPD--SEGIVEAVTAVLAKKGANIVELETETL 129 (195)
T ss_dssp EEEEEEEEC--CTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEEeCC--CcCHHHHHHHHHHHcCCCEEEceeeec
Confidence 356667787 567788999999999999999998753
No 46
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=24.64 E-value=1.5e+02 Score=21.12 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=42.8
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEecCCcch
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQR 86 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g~nav~ 86 (113)
.+++++.=+.+....+.++-..+.+.|-.+.-.|-.-+....-..--. ...+.++.+.+++. ||+. +.+..+|..+
T Consensus 23 ~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~--~~~~~~~~L~~~l~-G~~a-l~Ft~~dp~~ 98 (284)
T 3a1y_G 23 PVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKE--LGKPELEKLVEYID-RGAG-ILVTNMNPFK 98 (284)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTT--CSCSSTTSSSCCCC-TTEE-EEEESSCHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccc--cccccHHHHhhhcC-CCEE-EEEECCCHHH
Confidence 356667777776555667777777777555544444444332221100 11345777777665 8754 4466555444
Q ss_pred hhH
Q psy5168 87 PRR 89 (113)
Q Consensus 87 ~~r 89 (113)
..+
T Consensus 99 vak 101 (284)
T 3a1y_G 99 LYK 101 (284)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 47
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=23.93 E-value=61 Score=21.67 Aligned_cols=30 Identities=7% Similarity=-0.228 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCcchhhHhhhCCCCCCCCCC
Q psy5168 72 GPVVPMCWARPEVQRPRRAQRRPLRPPNRPD 102 (113)
Q Consensus 72 gp~v~l~l~g~nav~~~r~l~G~~~~~~A~p 102 (113)
.++..+.+.|. .+.++.+.+|++++.+.+|
T Consensus 158 ~~~y~L~Is~~-~~~~F~~~IGf~~~~k~~~ 187 (199)
T 2vs7_A 158 HGVYVLNISLR-DRIKFVHTILSSHLNPLPP 187 (199)
T ss_dssp TTEEEEEECGG-GHHHHHHHTTTCCC-----
T ss_pred CCeEEEEECch-HHHHHHHHcCCCCcccccc
Confidence 34677889998 8999999999999987654
No 48
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.12 E-value=86 Score=17.06 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=14.9
Q ss_pred hHHHHHHHHHCCCeEEEE
Q psy5168 22 VGNIIKRFEDKGFKLVAM 39 (113)
Q Consensus 22 ~g~Ii~~i~~~g~~I~~~ 39 (113)
..+++..|.+.||.++..
T Consensus 7 ~~elik~L~~~G~~~~r~ 24 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMA 24 (70)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEeCC
Confidence 368999999999998753
No 49
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.97 E-value=97 Score=17.76 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCCCceeEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 1 ~~~~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
|+......++++-.|.... ..+.+.|.+.|+.+... -+.+++.+.....
T Consensus 1 M~~~~~~~ilivdd~~~~~---~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~~ 49 (132)
T 3lte_A 1 MSLKQSKRILVVDDDQAMA---AAIERVLKRDHWQVEIA----HNGFDAGIKLSTF 49 (132)
T ss_dssp ------CEEEEECSCHHHH---HHHHHHHHHTTCEEEEE----SSHHHHHHHHHHT
T ss_pred CCCCCCccEEEEECCHHHH---HHHHHHHHHCCcEEEEe----CCHHHHHHHHHhc
Confidence 5555567888998886643 33445567789977643 3677776666543
No 50
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=21.81 E-value=75 Score=21.71 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=39.7
Q ss_pred EEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh---cCCCCCcccccccccCCeEEEEEecCCc
Q psy5168 8 TFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL---ATKPFFPGLVKYMSSGPVVPMCWARPEV 84 (113)
Q Consensus 8 tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~---~~~~~~~~lv~~~~sgp~v~l~l~g~na 84 (113)
.++++.-+.+....+.++-..+.+.+ . .++.+ ...++.=.... ...+.++.+.+++. ||+ ++.+.-+|.
T Consensus 21 ~v~v~~~~gl~~~ql~~lR~~lr~~~-~---~~v~K--NtL~r~Al~~~~~~e~~~~~~~L~~~l~-G~~-~l~Ft~~dp 92 (213)
T 3jsy_A 21 VVAIVDMMDVPAPQLQEIRDKIRDKV-K---LRMSR--NTLIIRALKEAAEELNNPKLAELANYVE-RGA-AILVTDMNP 92 (213)
T ss_dssp EEEEEECCSCCHHHHHHHHHHHTTTE-E---EEECC--HHHHHHHHHHHHHHTTCGGGGGGGGGCC-SSE-EEEEESSCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCC-E---EEEEe--HHHHHHHHhhchhhhcccchhHHHHhCc-CCe-EEEEeCCCH
Confidence 56777777776555566666676542 1 22221 22222222222 12455777877765 774 444555565
Q ss_pred chhhHhhh
Q psy5168 85 QRPRRAQR 92 (113)
Q Consensus 85 v~~~r~l~ 92 (113)
.+..+.+.
T Consensus 93 ~~v~k~l~ 100 (213)
T 3jsy_A 93 FKLYKLLE 100 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 51
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.79 E-value=79 Score=19.51 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=23.2
Q ss_pred CceeEEEEEcCcceecCchHHHHHHHHHCCCeEEE
Q psy5168 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVA 38 (113)
Q Consensus 4 ~~e~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~ 38 (113)
+.-+++++|-...=..+....+++.|.+.||.|.-
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~p 36 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEFIP 36 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEE
Confidence 34577888865543333335888999999996554
No 52
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.85 E-value=1.3e+02 Score=19.98 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=43.9
Q ss_pred eEEEEEcCccee---cCchHHHHHHHHHCCCeEEEEEEecCCHHHHHHHHHHhcCCCCCcccccccccCCeEEEEEec-C
Q psy5168 7 RTFLMIKPDGVQ---RGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWAR-P 82 (113)
Q Consensus 7 ~tl~liKPd~~~---~~~~g~Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~v~l~l~g-~ 82 (113)
.+++|++|+.-. ...+..+-+.|.++|-.|.....+=.- ..| |.-.+..- . ........|=-+.+-+.. .
T Consensus 66 E~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~R-rLA---Y~IkK~~k-g-g~~~~h~eG~Yvlm~F~a~p 139 (168)
T 3bbn_F 66 ETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVI-PLA---YSIKRKNK-A-GETNNYLDGIYLLFTYFTKP 139 (168)
T ss_dssp EEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEEC-CCS---SCTTSCSS-S-CSSCCCCCCEEEEEEEEECT
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccc-ccc---ceeccCcc-c-ccccccceEEEEEEEEEeCH
Confidence 588999998422 234567778888999888887653200 000 11100000 0 000112246556666665 4
Q ss_pred CcchhhHhhhCCC
Q psy5168 83 EVQRPRRAQRRPL 95 (113)
Q Consensus 83 nav~~~r~l~G~~ 95 (113)
+++..+...+.-.
T Consensus 140 ~~I~ELeR~Lrid 152 (168)
T 3bbn_F 140 ESISPLEAALVTD 152 (168)
T ss_dssp TSSHHHHHHHHTS
T ss_pred HHHHHHHHHhcCC
Confidence 6777777666533
No 53
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=20.67 E-value=70 Score=16.26 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHh
Q psy5168 44 PSEELLKQHYSDL 56 (113)
Q Consensus 44 l~~~~a~~~y~~~ 56 (113)
||+++|+||....
T Consensus 3 LT~~EA~EfH~~~ 15 (41)
T 1nkz_B 3 LTAEQSEELHKYV 15 (41)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7899999996654
No 54
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=20.45 E-value=1.8e+02 Score=18.74 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=29.3
Q ss_pred eEEEEEcCcceecCchHHHHHHHHHCCCeEEEEEEecCC
Q psy5168 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPS 45 (113)
Q Consensus 7 ~tl~liKPd~~~~~~~g~Ii~~i~~~g~~I~~~k~~~l~ 45 (113)
..+.+.-|| +.|.+.+|.+.|.+.|+.|..++.....
T Consensus 94 ~~l~v~~~D--~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 94 VEVYVESDD--KLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEESC--CTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEEeCC--CccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 345566677 5577889999999999999999987644
No 55
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=20.12 E-value=1.6e+02 Score=17.99 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=30.8
Q ss_pred EEEcCcceecCchHH----HHHHHHHCCCeEEEEEEecCCHHHHHHHHHHh
Q psy5168 10 LMIKPDGVQRGLVGN----IIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL 56 (113)
Q Consensus 10 ~liKPd~~~~~~~g~----Ii~~i~~~g~~I~~~k~~~l~~~~a~~~y~~~ 56 (113)
+.|.|+.-.+|+... +++...+.|+.-+....+.-+..-|..||...
T Consensus 94 ~~V~p~~rg~GiG~~Ll~~~~~~a~~~g~~~~~l~~~~~~N~~A~~~y~k~ 144 (173)
T 4h89_A 94 FMVAAAARGRGVGRALCQDMIDWAGREGFRAIQFNAVVETNTVAVKLWQSL 144 (173)
T ss_dssp EEECGGGTTSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTCHHHHHHHHHT
T ss_pred eEEEEeeccchHHHHHHHHHHHHHHHCCCcEEEEeeecccCHHHHHHHHHC
Confidence 557898877774334 44555677887665544434567789999875
Done!