RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5168
(113 letters)
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B
mitochondrion; 3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 161 bits (411), Expect = 9e-53
Identities = 43/79 (54%), Positives = 58/79 (73%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKP 60
M+ ERTF+ +KPDGVQRGLV I+ RFE KG+KLVA+K V ++LL+QHY++ KP
Sbjct: 9 MSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKP 68
Query: 61 FFPGLVKYMSSGPVVPMCW 79
FFP +V +M SGP++ W
Sbjct: 69 FFPKMVSFMKSGPILATVW 87
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism,
apoptosis, transferase, struc genomics, structural
genomics consortium, SGC; HET: ADP; 2.30A {Homo
sapiens} SCOP: d.58.6.1
Length = 169
Score = 162 bits (411), Expect = 1e-52
Identities = 50/79 (63%), Positives = 61/79 (77%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKP 60
ERTFL +KPDGVQR LVG I++RFE KGFKLVA+K V SEELL++HY++L +P
Sbjct: 17 CTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERP 76
Query: 61 FFPGLVKYMSSGPVVPMCW 79
F+ LVKYM+SGPVV M W
Sbjct: 77 FYGRLVKYMASGPVVAMVW 95
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer,
NM23 GEN, hexamer, activator, oncogene, ATP-binding,
cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo
sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R
3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A*
1nsq_A* 1ndl_A*
Length = 151
Score = 160 bits (408), Expect = 2e-52
Identities = 58/74 (78%), Positives = 63/74 (85%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ SEE LKQHY DL +PFFPGL
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 66 VKYMSSGPVVPMCW 79
VKYM+SGPVV M W
Sbjct: 64 VKYMNSGPVVAMVW 77
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 160 bits (408), Expect = 2e-52
Identities = 43/79 (54%), Positives = 57/79 (72%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKP 60
M + ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+ EEL +HY++ KP
Sbjct: 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKP 63
Query: 61 FFPGLVKYMSSGPVVPMCW 79
FF GLV +++SGPV M W
Sbjct: 64 FFDGLVSFITSGPVFAMVW 82
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium
falciparum} SCOP: d.58.6.1
Length = 157
Score = 160 bits (406), Expect = 4e-52
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E++F+MIKPDGVQRGLVG IIKRFE KG+KL+A+K + P+EE+LK+HY +L+ +PFF L
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 69
Query: 66 VKYMSSGPVVPMCW 79
V Y+S GPVV M W
Sbjct: 70 VAYISKGPVVAMVW 83
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 160 bits (406), Expect = 4e-52
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT++M+KPDGVQRGL+G I+KRFE KG KL+A KF P+ +++ QHY + KPFF L
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDL 69
Query: 66 VKYMSSGPVVPMCW 79
++S GPV M W
Sbjct: 70 CDFISHGPVFCMIW 83
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 159 bits (405), Expect = 6e-52
Identities = 50/76 (65%), Positives = 61/76 (80%)
Query: 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFP 63
+ERTFLM+KPDGVQRGLVG II RFE +GFKLVAMKF PS+ L+++HY + A +PFF
Sbjct: 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFA 65
Query: 64 GLVKYMSSGPVVPMCW 79
GL K++SSGPV M W
Sbjct: 66 GLCKFLSSGPVCAMVW 81
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 160 bits (406), Expect = 6e-52
Identities = 54/74 (72%), Positives = 61/74 (82%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LV +KF+ SE+LLK+HY DL +PFF GL
Sbjct: 25 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 84
Query: 66 VKYMSSGPVVPMCW 79
VKYM SGPVV M W
Sbjct: 85 VKYMHSGPVVAMVW 98
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 159 bits (404), Expect = 7e-52
Identities = 43/74 (58%), Positives = 57/74 (77%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E T++M+KPDG+QRGLVG II RFE KGFKL+ +K +EL ++HY DL+ K FFP L
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 65
Query: 66 VKYMSSGPVVPMCW 79
++Y++SGPVV M W
Sbjct: 66 IEYITSGPVVCMAW 79
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP:
d.58.6.1
Length = 149
Score = 158 bits (403), Expect = 8e-52
Identities = 42/74 (56%), Positives = 53/74 (71%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E+TF+MIKPDGVQRGL+G +I RFE KGF L +K + ++HY DL++K FF GL
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 66 VKYMSSGPVVPMCW 79
V Y+ SGPVV M W
Sbjct: 62 VDYIVSGPVVAMIW 75
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 158 bits (403), Expect = 1e-51
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E++F+MIKPDGVQRGL+G+II RFE KGF L MKF+ +QHY+DL+ KPFFPGL
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 66 VKYMSSGPVVPMCW 79
V+Y+ SGPVV M W
Sbjct: 63 VEYIISGPVVAMVW 76
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 158 bits (403), Expect = 1e-51
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E+TFLM+KPDGVQR +G I+ RFE KGF+LV K + + E+ QHY++ KPFF L
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 66 VKYMSSGPVVPMCW 79
V +++SGPV M W
Sbjct: 62 VDFITSGPVFAMVW 75
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 158 bits (403), Expect = 1e-51
Identities = 42/75 (56%), Positives = 51/75 (68%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG 64
KERTFLM+KPDGVQR LVG ++KRFE KG KL K + S++ HY++L PFF G
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 65 LVKYMSSGPVVPMCW 79
LV +SGPV M W
Sbjct: 62 LVGGATSGPVFAMVW 76
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta
protein family; HET: ADP; 2.22A {Staphylococcus aureus
subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 158 bits (403), Expect = 1e-51
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTFLMIKPD VQR L+G +I R E KG KLV K + EL + HY + KPF+ L
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 66 VKYMSSGPVVPMCW 79
+ +++S PV M
Sbjct: 62 ISFITSAPVFAMVV 75
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB:
4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A*
3ngu_A*
Length = 161
Score = 158 bits (402), Expect = 2e-51
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ +KPDGVQR LVG IIKRFE+KG+KLV +K + P+EE KQHY DLA+KPF+ GL
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 66 VKYMSSGPVVPMCW 79
V Y SSGP+V M W
Sbjct: 72 VSYFSSGPIVGMVW 85
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 157 bits (399), Expect = 4e-51
Identities = 41/74 (55%), Positives = 56/74 (75%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTFL +KPDGV RGLVG II R+E KGF LV +K + P+++L + HY++ +PFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 66 VKYMSSGPVVPMCW 79
V +++SGPVV M +
Sbjct: 69 VSFITSGPVVAMVF 82
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 158 bits (401), Expect = 6e-51
Identities = 44/74 (59%), Positives = 56/74 (75%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ IKPDGVQRGL+ II RFE KGFKLV +K + P+++ +QHY DL +PFF GL
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 92
Query: 66 VKYMSSGPVVPMCW 79
++SSGPV+ M W
Sbjct: 93 CDFLSSGPVIAMVW 106
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 157 bits (399), Expect = 6e-51
Identities = 44/74 (59%), Positives = 56/74 (75%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT + +KPDGVQR LVG++I+RFE +GF LV MK + E +L +HY DL KPF+P L
Sbjct: 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84
Query: 66 VKYMSSGPVVPMCW 79
++YMSSGPVV M W
Sbjct: 85 IRYMSSGPVVAMVW 98
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 156 bits (397), Expect = 6e-51
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+MIKPDGV+RGLVG I+ RFE KGF++ A+K + S+EL ++HY++ KPFFPGL
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 66 VKYMSSGPVVPMCW 79
V++++SGPVV M
Sbjct: 62 VRFITSGPVVAMVL 75
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 156 bits (396), Expect = 8e-51
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT ++IKPDG++R L+G II R E KG + A++ S EL QHY++ KPFF L
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 66 VKYMSSGPVVPMCW 79
+++++SGPVV
Sbjct: 63 LEFITSGPVVAAIV 76
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 156 bits (396), Expect = 1e-50
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+MIKPD ++R L+ II+RFE+KG L A K V P E+L+ HYS L++ PFF +
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEM 65
Query: 66 VKYMSSGPVVPMCW 79
V+ M SG V+ M W
Sbjct: 66 VEDMMSGMVLAMVW 79
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP;
1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R*
2nck_R 3pj9_A
Length = 144
Score = 155 bits (394), Expect = 2e-50
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT +IKPDG+++G++G II RFE+KG K VA++ S+ + Y+ +PFF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 66 VKYMSSGPVVPMCW 79
V++M SGPVV M
Sbjct: 63 VQFMISGPVVLMVL 76
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 154 bits (392), Expect = 4e-50
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF +IKP+ V + ++GNI RFE GFK+V K + + E + Y++ KPFF GL
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 66 VKYMSSGPVVPMCW 79
V++M+SGP+V
Sbjct: 63 VEFMTSGPIVVSVL 76
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 154 bits (391), Expect = 8e-50
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT ++IKPD V RGL+G II RFE KG K+V MK +W EL ++HY + KPFF L
Sbjct: 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKAL 67
Query: 66 VKYMSSGPVVPMCW 79
+ Y++ PVV M
Sbjct: 68 IDYITKTPVVVMVL 81
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 151 bits (385), Expect = 4e-49
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT +++KPD +++G +G I+ RF +GF++ A+K + E + Y +PFF L
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 66 VKYMSSGPVVPMCW 79
V++MSSGPVV
Sbjct: 64 VEFMSSGPVVAAVL 77
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 151 bits (385), Expect = 5e-49
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT +IKPD V + ++G I RFE+ G K+VA + S ++ Y+ A +PFF L
Sbjct: 8 ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDL 67
Query: 66 VKYMSSGPVVPMCW 79
V++M SGPV+
Sbjct: 68 VEFMISGPVMIQVL 81
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase;
phosphotransferase nucleotide binding, ATP-binding,
magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba
polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A*
3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A*
3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A*
3eic_A* 3evw_A* 3gpa_A* ...
Length = 146
Score = 150 bits (382), Expect = 1e-48
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWP-SEELLKQHYSDLATKPFFPG 64
+RT ++IKPD +R LV I+ R E K FK+V+MKF L++QHY + + + +F
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 65 LVKYMSSGPVVPMCW 79
+M SGP++ + +
Sbjct: 67 NCDFMVSGPIISIVY 81
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 150 bits (380), Expect = 8e-48
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYS-----D 55
M+ ++T ++KPDGV+RGL+G+++ RFE G K+VA K + E L K+HY
Sbjct: 22 MSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVF 81
Query: 56 LATKPFFPGLVKYMSSGPVVPMCW 79
++ + L+K++S+ PV
Sbjct: 82 RHSEAVWNSLIKFISNSPVFTFVV 105
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 131 bits (332), Expect = 2e-40
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 33/109 (30%)
Query: 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL------- 56
P E+T L++KPD V RGLV II RF+ G K+VA+K V S E +++ Y
Sbjct: 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSA 73
Query: 57 --------------------------ATKPFFPGLVKYMSSGPVVPMCW 79
+ LVKYM+SGP V M
Sbjct: 74 GQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVL 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.001
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHY----SDLATKP 60
+E +++ D V L + K ++V KFV EE+L+ +Y S + T+
Sbjct: 49 EEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQ-KFV---EEVLRINYKFLMSPIKTEQ 102
Query: 61 FFPGL--VKYMS--------SGPVVPMCWARPE-VQRPRRAQRRPLRP 97
P + Y+ + +R + + R+A LRP
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRP 149
Score = 29.1 bits (64), Expect = 0.32
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 44 PSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPR 88
P+E ++ + L+ FP + ++ + W
Sbjct: 368 PAE--YRKMFDRLS---VFPPSAHIPTI--LLSLIWFDVIKSDVM 405
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 28.3 bits (64), Expect = 0.37
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 4 PKERTFLMI----KPDGVQRGLVGNIIKRFEDKGFKLVA 38
P++ + I +P + + ++ ++GFKL A
Sbjct: 23 PQKGILIGIQQSFRPRFLG------VAEQLHNEGFKLFA 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 27.7 bits (62), Expect = 0.86
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 11 MIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFV 42
+ P+ + + I + E + + A+
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNIS 652
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase,
family 9, cellobiohydrolase; 2.1A {Clostridium
thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Length = 609
Score = 26.9 bits (59), Expect = 1.5
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 43 WPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPD 102
W E K ++ P G+V + W + Q R LRP +
Sbjct: 235 WEIEFFKKMQVTE-KEDPSIAGMV----HHKIHDFRWTALGMLPHEDPQPRYLRPVSTAA 289
Query: 103 LGAPA 107
A
Sbjct: 290 TLNFA 294
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 26.1 bits (57), Expect = 3.3
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 88 RRAQRRPLRPPNRPDLGAPADLC 110
RA PL P P AP L
Sbjct: 241 TRAAAVPLDPVLNPQTNAPTPLG 263
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 25.6 bits (57), Expect = 3.6
Identities = 12/50 (24%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 62 FPGLVKYMSSGPVVP--MCWARPEVQRPRRAQRRPLRPPNRPDLGAPADL 109
FP L P P W + P P RPP A +
Sbjct: 1 FPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRI 50
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 25.8 bits (57), Expect = 3.7
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 26 IKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCW 79
I+R + KG K+ + P + +L K + +K W
Sbjct: 332 IRRLKAKGLKICVW--INPYIGQKSPVFKELQEKGYL---LKRPDGSLWQWDKW 380
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 26.0 bits (57), Expect = 3.8
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 26 IKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCW 79
+ + +++ VWP +Y +L K F +
Sbjct: 496 VDKVHAMNAQIMIS--VWPKFYPTTDNYKELNAKGFM---FNRNLDEKNLDWIG 544
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase,
hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp}
PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Length = 537
Score = 25.9 bits (57), Expect = 4.0
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 11/57 (19%)
Query: 43 WPSEELLKQHYSDLATKPFFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPN 99
LL G V + + P P RPE L P +
Sbjct: 196 EEIAWLLTMQDPA-------TGGVYHKVTTPSFPPLDTRPEDD----DAPLVLSPIS 241
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 25.4 bits (55), Expect = 5.4
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 88 RRAQRRPLRPPNRPDLGAPADLCE 111
PL P P DL E
Sbjct: 227 VYGVAVPLTPAVNPSTNRAVDLTE 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 5.7
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 16 GVQRGL--VGNIIKRFEDKGFKLVAMKFVWPSEELLKQH 52
G R L V N++ + + ++ ++ S E ++ H
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQ-KSLSLEEVEGH 1894
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.446
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,786,645
Number of extensions: 95694
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 55
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)