RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5168
(113 letters)
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 112 bits (282), Expect = 6e-34
Identities = 55/93 (59%), Positives = 67/93 (72%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG 64
ERTFL +KPDGVQR LVG I++RFE KGFKLVA+K V SEELL++HY++L +PF+
Sbjct: 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGR 63
Query: 65 LVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRP 97
LVKYM+SGPVV M W +V R RA P
Sbjct: 64 LVKYMASGPVVAMVWQGLDVVRTSRALIGATNP 96
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 111 bits (279), Expect = 2e-33
Identities = 61/94 (64%), Positives = 68/94 (72%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ IKPDGVQRGLVG IIKRFE KGF+LVAMKF+ SEE LKQHY DL +PFFPGL
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 66 VKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPN 99
VKYM+SGPVV M W V + R P +
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPAD 97
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 110 bits (275), Expect = 7e-33
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKP 60
M + E T++M+KPDG+QRGLVG II RFE KGFKL+ +K +EL ++HY DL+ K
Sbjct: 2 MED-VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKS 60
Query: 61 FFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112
FFP L++Y++SGPVV M W V R L P P +
Sbjct: 61 FFPNLIEYITSGPVVCMAWEGVGVVASARK----LIGKTDPLQAEPGTIRGD 108
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 108 bits (270), Expect = 4e-32
Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+ IKPDGVQRGL+ II RFE KGFKLV +K + P+++ +QHY DL +PFF GL
Sbjct: 4 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 63
Query: 66 VKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112
++SSGPV+ M W V R L P AP +
Sbjct: 64 CDFLSSGPVIAMVWEGEGVIT----YGRKLIGATDPQKSAPGTIRGD 106
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 106 bits (266), Expect = 1e-31
Identities = 50/92 (54%), Positives = 67/92 (72%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E++F+MIKPDGVQRGLVG IIKRFE KG+KL+A+K + P+EE+LK+HY +L+ +PFF L
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61
Query: 66 VKYMSSGPVVPMCWARPEVQRPRRAQRRPLRP 97
V Y+S GPVV M W ++ + R P
Sbjct: 62 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNP 93
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 105 bits (264), Expect = 6e-31
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 4 PKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDL------- 56
P E+T L++KPD V RGLV II RF+ G K+VA+K V S E +++ Y
Sbjct: 1 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSA 60
Query: 57 --------------------------ATKPFFPGLVKYMSSGPVVPMCWARPEV 84
+ LVKYM+SGP V M
Sbjct: 61 GQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRA 114
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 104 bits (261), Expect = 7e-31
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT +IKPDG+++G++G II RFE+KG K VA++ S+ + Y+ +PFF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 66 VKYMSSGPVVPMCWARPEVQR 86
V++M SGPVV M
Sbjct: 63 VQFMISGPVVLMVLEGENAVL 83
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 104 bits (260), Expect = 1e-30
Identities = 46/79 (58%), Positives = 62/79 (78%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+MIKPDGV+RGLVG I+ RFE KGF++ A+K + S+EL ++HY++ KPFFPGL
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 66 VKYMSSGPVVPMCWARPEV 84
V++++SGPVV M P V
Sbjct: 62 VRFITSGPVVAMVLEGPGV 80
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 102 bits (256), Expect = 5e-30
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
E+TF+MIKPDGVQRGL+G +I RFE KGF L +K + ++HY DL++K FF GL
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 66 VKYMSSGPVVPMCWARPEVQRPRRAQRRPLRPPNRPDLGAPADLCEK 112
V Y+ SGPVV M W V R + P P +
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRK----IIGATNPAASEPGTIRGD 104
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 102 bits (254), Expect = 1e-29
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG 64
KERTFL +KPDGV RGLVG II R+E KGF LV +K + P+++L + HY++ +PFF G
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
Query: 65 LVKYMSSGPVVPMCWARPEVQR 86
LV +++SGPVV M + V
Sbjct: 63 LVSFITSGPVVAMVFEGKGVVA 84
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 100 bits (251), Expect = 2e-29
Identities = 49/97 (50%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKP 60
M +ERT + +KPDGVQR LVG++I+RFE +GF LV MK + E +L +HY DL KP
Sbjct: 2 MGT-RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKP 60
Query: 61 FFPGLVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRP 97
F+P L++YMSSGPVV M W V R RA
Sbjct: 61 FYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDS 97
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 100 bits (251), Expect = 3e-29
Identities = 42/79 (53%), Positives = 56/79 (70%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERTF+M+KPDGVQRGL+G+I+ R E KG K+V KF+ EEL +HY++ KPFF GL
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 66 VKYMSSGPVVPMCWARPEV 84
V +++SGPV M W +
Sbjct: 63 VSFITSGPVFAMVWEGADA 81
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 100 bits (249), Expect = 4e-29
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPGL 65
ERT ++IKPDG++R L+G II R E KG + A++ S EL QHY++ KPFF L
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 66 VKYMSSGPVVPMCWARPEVQR 86
+++++SGPVV
Sbjct: 62 LEFITSGPVVAAIVEGTRAIA 82
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 149
Score = 100 bits (249), Expect = 6e-29
Identities = 44/93 (47%), Positives = 53/93 (56%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG 64
KERTFLM+KPDGVQR LVG ++KRFE KG KL K + S++ HY++L PFF G
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60
Query: 65 LVKYMSSGPVVPMCWARPEVQRPRRAQRRPLRP 97
LV +SGPV M W R P
Sbjct: 61 LVGGATSGPVFAMVWEGLNAAATARQILGATNP 93
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 98.2 bits (244), Expect = 4e-28
Identities = 38/82 (46%), Positives = 49/82 (59%)
Query: 5 KERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLKQHYSDLATKPFFPG 64
ERT ++IKPD V RGL+G II RFE KG K+V MK +W EL ++HY + KPFF
Sbjct: 2 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 61
Query: 65 LVKYMSSGPVVPMCWARPEVQR 86
L+ Y++ PVV M
Sbjct: 62 LIDYITKTPVVVMVLEGRYAVE 83
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 91.3 bits (226), Expect = 9e-26
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 7 RTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMK-FVWPSEELLKQHYSDLATKPFFPGL 65
RT ++IKPD +R LV I+ R E K FK+V+MK + L++QHY + + + +F
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 66 VKYMSSGPVVPMCWARPEVQR 86
+M SGP++ + + +
Sbjct: 62 CDFMVSGPIISIVYEGTDAIS 82
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
influenzae [TaxId: 727]}
Length = 135
Score = 24.5 bits (53), Expect = 2.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 1 MAEPKERTFLMIKPDGVQRGLVGNIIKRFE 30
+ + +R + ++P VQ L+ I++FE
Sbjct: 16 VVQISDRNWFDMQPSIVQDTLIAGAIQKFE 45
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 24.7 bits (53), Expect = 3.1
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 6 ERTFLMIKPDGVQRGLVGNIIKRFEDKGFKLVAMKFVWPSEELLK 50
+ F D + + G +V + WP E +
Sbjct: 278 KGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMG 322
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 24.8 bits (53), Expect = 3.6
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 25 IIKRFEDKGFKLVAMKFVWPSEELL 49
+ + ++GF E L
Sbjct: 389 VRRALAERGFHGATPVPREYGENLA 413
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 23.6 bits (50), Expect = 6.1
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 25 IIKRFEDKGFKLVAMKFVWPSEE 47
+ + + G K++ K + PSE+
Sbjct: 140 VKRFLRESGLKVLTKKPLVPSEK 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.446
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,860
Number of extensions: 19498
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 26
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)