Query psy5169
Match_columns 94
No_of_seqs 141 out of 1043
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:07:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 4.4E-23 9.6E-28 152.5 7.7 87 7-93 3-92 (557)
2 KOG4441|consensus 99.9 3E-22 6.6E-27 148.5 7.5 89 5-93 12-101 (571)
3 PHA02790 Kelch-like protein; P 99.8 2.4E-20 5.1E-25 136.0 5.6 75 18-93 11-87 (480)
4 KOG4350|consensus 99.8 5.3E-20 1.1E-24 130.9 4.4 82 13-94 28-110 (620)
5 PF00651 BTB: BTB/POZ domain; 99.8 1.4E-19 2.9E-24 108.1 5.4 74 20-93 1-77 (111)
6 PHA03098 kelch-like protein; P 99.7 1.9E-18 4.2E-23 126.7 5.5 65 26-93 6-72 (534)
7 smart00225 BTB Broad-Complex, 99.7 2E-16 4.3E-21 89.9 6.4 63 31-93 1-64 (90)
8 KOG4591|consensus 99.6 1.6E-15 3.4E-20 99.8 4.8 85 8-94 45-132 (280)
9 KOG2075|consensus 99.5 6.1E-14 1.3E-18 101.2 6.2 87 7-93 92-184 (521)
10 KOG0783|consensus 99.2 1.6E-11 3.5E-16 93.7 3.4 66 26-91 555-633 (1267)
11 KOG0783|consensus 98.7 1.5E-09 3.3E-14 83.2 -0.2 63 27-89 708-772 (1267)
12 KOG2838|consensus 98.7 1.6E-08 3.5E-13 69.7 4.7 79 13-91 114-195 (401)
13 KOG4682|consensus 98.6 5.3E-08 1.1E-12 69.9 3.5 73 20-93 60-137 (488)
14 KOG2838|consensus 97.8 1.2E-05 2.6E-10 55.7 1.9 80 14-93 220-327 (401)
15 PF03931 Skp1_POZ: Skp1 family 97.7 0.00012 2.6E-09 39.7 4.7 55 32-88 3-58 (62)
16 KOG0511|consensus 97.2 0.00034 7.4E-09 50.5 2.7 53 39-92 301-358 (516)
17 PF02214 BTB_2: BTB/POZ domain 97.0 0.00033 7.2E-09 40.6 1.3 58 32-89 1-62 (94)
18 smart00512 Skp1 Found in Skp1 97.0 0.0028 6E-08 37.6 5.0 56 32-88 4-62 (104)
19 KOG0511|consensus 96.3 0.0011 2.4E-08 48.0 0.4 62 28-90 148-210 (516)
20 KOG2716|consensus 96.3 0.0099 2.2E-07 40.3 4.8 61 32-92 7-69 (230)
21 KOG1987|consensus 94.9 0.0068 1.5E-07 41.8 -0.1 61 30-90 99-162 (297)
22 KOG2714|consensus 93.9 0.16 3.4E-06 37.5 4.9 62 32-93 13-78 (465)
23 KOG3473|consensus 93.8 0.17 3.8E-06 30.1 4.1 55 32-87 19-77 (112)
24 KOG4390|consensus 83.7 2 4.4E-05 31.9 3.9 60 32-94 42-105 (632)
25 KOG1724|consensus 80.2 5.7 0.00012 25.6 4.7 53 36-89 12-65 (162)
26 KOG3342|consensus 76.9 1.8 3.9E-05 27.9 1.6 18 31-48 82-101 (180)
27 KOG1665|consensus 74.0 5.3 0.00011 27.6 3.3 61 32-92 11-76 (302)
28 KOG3840|consensus 71.6 7 0.00015 28.2 3.6 66 28-93 94-165 (438)
29 KOG1778|consensus 59.9 1.5 3.3E-05 31.2 -1.4 55 36-90 33-88 (319)
30 PF04343 DUF488: Protein of un 56.4 20 0.00043 21.5 3.3 19 32-50 101-120 (122)
31 PF02519 Auxin_inducible: Auxi 55.1 22 0.00049 20.9 3.2 53 32-87 41-99 (100)
32 PF11822 DUF3342: Domain of un 53.8 26 0.00056 25.1 3.9 51 39-90 14-68 (317)
33 COG5201 SKP1 SCF ubiquitin lig 50.7 41 0.0009 21.2 4.0 54 32-87 4-58 (158)
34 KOG3713|consensus 50.2 63 0.0014 24.6 5.5 24 70-93 82-105 (477)
35 PF09593 Pathogen_betaC1: Beta 50.1 10 0.00022 23.2 1.2 53 37-91 20-76 (117)
36 PF11265 Med25_VWA: Mediator c 43.6 24 0.00052 24.1 2.3 24 26-58 10-33 (226)
37 PF12112 DUF3579: Protein of u 41.5 2.1 4.6E-05 25.1 -2.6 66 4-89 17-82 (92)
38 COG1576 Uncharacterized conser 41.3 42 0.00091 21.6 3.1 25 13-39 82-106 (155)
39 KOG2485|consensus 40.6 70 0.0015 23.1 4.3 45 11-60 28-72 (335)
40 KOG3863|consensus 40.5 2.5 5.4E-05 32.6 -3.0 38 19-61 4-41 (604)
41 KOG2715|consensus 39.5 49 0.0011 21.9 3.2 61 31-91 22-87 (210)
42 PRK14715 DNA polymerase II lar 38.5 1.7E+02 0.0036 25.7 6.6 83 5-90 1140-1224(1627)
43 PF01848 HOK_GEF: Hok/gef fami 36.3 57 0.0012 16.3 2.5 22 23-44 19-40 (43)
44 COG1531 Uncharacterized protei 33.8 16 0.00035 20.7 0.3 16 33-48 48-63 (77)
45 PRK09738 small toxic polypepti 33.2 62 0.0013 16.9 2.4 23 22-44 23-45 (52)
46 COG0350 Ada Methylated DNA-pro 33.0 9.3 0.0002 24.6 -0.9 11 41-51 137-147 (168)
47 TIGR00589 ogt O-6-methylguanin 30.7 8.6 0.00019 21.7 -1.2 13 40-52 50-62 (80)
48 PF00633 HHH: Helix-hairpin-he 28.0 69 0.0015 14.5 1.9 16 71-86 15-30 (30)
49 PF10905 DUF2695: Protein of u 28.0 55 0.0012 17.1 1.7 19 18-36 34-52 (53)
50 PRK09759 small toxic polypepti 27.5 92 0.002 16.1 2.5 22 23-44 22-43 (50)
51 PF11889 DUF3409: Domain of un 26.7 38 0.00083 17.8 0.9 16 29-44 35-50 (56)
52 PF12926 MOZART2: Mitotic-spin 25.8 61 0.0013 18.9 1.7 16 74-89 40-55 (88)
53 PRK00901 methylated-DNA--prote 25.5 12 0.00026 23.9 -1.3 13 40-52 121-133 (155)
54 PF06404 PSK: Phytosulfokine p 25.4 24 0.00053 20.1 0.1 14 77-90 64-77 (81)
55 PLN03090 auxin-responsive fami 23.0 93 0.002 18.6 2.3 53 32-87 45-103 (104)
56 cd00758 MoCF_BD MoCF_BD: molyb 23.0 1.3E+02 0.0029 18.1 3.1 28 10-40 42-69 (133)
57 KOG2873|consensus 21.4 1.1E+02 0.0024 21.6 2.7 31 47-89 221-251 (284)
58 KOG2869|consensus 20.4 1.1E+02 0.0025 22.3 2.6 58 2-62 107-166 (379)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.88 E-value=4.4e-23 Score=152.49 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=78.9
Q ss_pred eeeCCchHHHHHHHHhhhhCCCceeEEEEEC-CeEEEhhHHHHhhcCHHHHhcCCCCCCCCC--CccccCCCCHHHHHHh
Q psy5169 7 LKWNNFHANLTTGFHGLFEDEDLVDVSLAVE-GKIIQAHKVILSVCSPYFIKCPPKKLGQSE--NTNFLSSFAFKIFECL 83 (94)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~-~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~--~~~~l~~v~~~~~~~l 83 (94)
+.+..|+..+++.|+++|.++.+|||+|.++ |+.|||||+|||++|+||++||++++.|+. ..+.|.++++++++.+
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 3456789999999999999999999999997 899999999999999999999999998753 4458999999999999
Q ss_pred hhhhcCCeec
Q psy5169 84 VYFWTPCTVK 93 (94)
Q Consensus 84 l~fly~~~v~ 93 (94)
|+|+|||++.
T Consensus 83 l~y~Yt~~i~ 92 (557)
T PHA02713 83 VQYLYNRHIS 92 (557)
T ss_pred HHHhcCCCCC
Confidence 9999999753
No 2
>KOG4441|consensus
Probab=99.87 E-value=3e-22 Score=148.45 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=83.8
Q ss_pred eeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHh
Q psy5169 5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECL 83 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~l 83 (94)
..+...+|...+++.|+.+|..+.+|||++.+++++|+|||+|||++|+||++||++++.|+.... .+.++++.+++.+
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~l 91 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELL 91 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHH
Confidence 356777899999999999999999999999999999999999999999999999999999998877 9999999999999
Q ss_pred hhhhcCCeec
Q psy5169 84 VYFWTPCTVK 93 (94)
Q Consensus 84 l~fly~~~v~ 93 (94)
|+|+||+++.
T Consensus 92 l~y~Yt~~i~ 101 (571)
T KOG4441|consen 92 LDYAYTGKLE 101 (571)
T ss_pred HHHhhcceEE
Confidence 9999999975
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.81 E-value=2.4e-20 Score=135.96 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred HHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcccc--CCCCHHHHHHhhhhhcCCeec
Q psy5169 18 TGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFL--SSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 18 ~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l--~~v~~~~~~~ll~fly~~~v~ 93 (94)
+++-.++.++.+|||++.+|+ +|||||+|||++|+|||+||.+++.|+...+.+ .++++++|+.+|+|+|||++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 556678999999998766554 899999999999999999999999998664533 489999999999999999975
No 4
>KOG4350|consensus
Probab=99.79 E-value=5.3e-20 Score=130.85 Aligned_cols=82 Identities=27% Similarity=0.373 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCCe
Q psy5169 13 HANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPCT 91 (94)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~~ 91 (94)
..++.+.+.+++.+.+++||+++++++.|||||+|||+||+|||+|+-+++.|+++.. +|++-..++|+.+|+|||||+
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcc
Confidence 4456788999999999999999999999999999999999999999999999998877 999999999999999999999
Q ss_pred ecC
Q psy5169 92 VKY 94 (94)
Q Consensus 92 v~~ 94 (94)
+.+
T Consensus 108 ~~l 110 (620)
T KOG4350|consen 108 IDL 110 (620)
T ss_pred eec
Confidence 864
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=1.4e-19 Score=108.07 Aligned_cols=74 Identities=26% Similarity=0.406 Sum_probs=62.7
Q ss_pred HHhhhhCCCceeEEEEEC-CeEEEhhHHHHhhcCHHHHhcCCCC-CCCCCCc-cccCCCCHHHHHHhhhhhcCCeec
Q psy5169 20 FHGLFEDEDLVDVSLAVE-GKIIQAHKVILSVCSPYFIKCPPKK-LGQSENT-NFLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 20 l~~~~~~~~~~Dv~l~~~-~~~~~~Hk~vLa~~S~yF~~~f~~~-~~e~~~~-~~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
|++++.++.++|++|.++ ++.|+|||.||+++|+||+++|.+. ..+.... +.++++++++++.+++|+|++++.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~ 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc
Confidence 578899999999999999 7999999999999999999999988 3444433 478999999999999999999874
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.74 E-value=1.9e-18 Score=126.65 Aligned_cols=65 Identities=28% Similarity=0.412 Sum_probs=60.0
Q ss_pred CCCceeEEEEE--CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169 26 DEDLVDVSLAV--EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 26 ~~~~~Dv~l~~--~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
++.+|||+|.+ +|++|+|||+|||++|+||++||.+++. ...+.+++ ++++|+.+|+|+|||++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~ 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKIN 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceE
Confidence 88999999998 9999999999999999999999999887 34558888 999999999999999975
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=2e-16 Score=89.89 Aligned_cols=63 Identities=32% Similarity=0.554 Sum_probs=56.5
Q ss_pred eEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCCeec
Q psy5169 31 DVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 31 Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
|+++.++|+.|++||.+|+++|+||++||.+++.+..... .++++++++|+.+|+|+|++++.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~ 64 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD 64 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee
Confidence 7889999999999999999999999999998877653444 88899999999999999999874
No 8
>KOG4591|consensus
Probab=99.59 E-value=1.6e-15 Score=99.82 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=75.0
Q ss_pred eeCCchHHHHHHHHhhhhCCCceeEEEEECC---eEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhh
Q psy5169 8 KWNNFHANLTTGFHGLFEDEDLVDVSLAVEG---KIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLV 84 (94)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~---~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll 84 (94)
+.++|+++++.-...++.+.+|+|++|.++| +.+||||.|||+||+++. |.++..|......++|++++++...|
T Consensus 45 s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~i 122 (280)
T KOG4591|consen 45 SPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAI 122 (280)
T ss_pred CchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhh
Confidence 3567899999999999999999999999974 779999999999999997 66665666555699999999999999
Q ss_pred hhhcCCeecC
Q psy5169 85 YFWTPCTVKY 94 (94)
Q Consensus 85 ~fly~~~v~~ 94 (94)
+|+||..++|
T Consensus 123 RWIYTDEidf 132 (280)
T KOG4591|consen 123 RWIYTDEIDF 132 (280)
T ss_pred eeeecccccc
Confidence 9999999986
No 9
>KOG2075|consensus
Probab=99.49 E-value=6.1e-14 Score=101.19 Aligned_cols=87 Identities=24% Similarity=0.248 Sum_probs=77.7
Q ss_pred eeeCCchHHHHHHHHhhhhCCCceeEEEEECC-----eEEEhhHHHHhhcCHHHHhcCCCCCCCC-CCccccCCCCHHHH
Q psy5169 7 LKWNNFHANLTTGFHGLFEDEDLVDVSLAVEG-----KIIQAHKVILSVCSPYFIKCPPKKLGQS-ENTNFLSSFAFKIF 80 (94)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~-----~~~~~Hk~vLa~~S~yF~~~f~~~~~e~-~~~~~l~~v~~~~~ 80 (94)
+.|..--..+......++++...+|+.+++++ +.|||||.|||..|++|++||.+++.++ ...+.++++.+++|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF 171 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF 171 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence 35666677888888999999999999999974 5799999999999999999999999998 55559999999999
Q ss_pred HHhhhhhcCCeec
Q psy5169 81 ECLVYFWTPCTVK 93 (94)
Q Consensus 81 ~~ll~fly~~~v~ 93 (94)
..+|+|||+..|+
T Consensus 172 l~~L~flYsdev~ 184 (521)
T KOG2075|consen 172 LAFLRFLYSDEVK 184 (521)
T ss_pred HHHHHHHhcchhh
Confidence 9999999998876
No 10
>KOG0783|consensus
Probab=99.17 E-value=1.6e-11 Score=93.70 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=54.8
Q ss_pred CCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC-------------CccccCCCCHHHHHHhhhhhcCCe
Q psy5169 26 DEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSE-------------NTNFLSSFAFKIFECLVYFWTPCT 91 (94)
Q Consensus 26 ~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~-------------~~~~l~~v~~~~~~~ll~fly~~~ 91 (94)
...+.||+|.||++.|+|||.|||+||++||.+|......+. ..+..+++.|..|+.+|+||||+|
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 346889999999999999999999999999999866433322 122367999999999999999986
No 11
>KOG0783|consensus
Probab=98.74 E-value=1.5e-09 Score=83.22 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=52.7
Q ss_pred CCceeEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcC
Q psy5169 27 EDLVDVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTP 89 (94)
Q Consensus 27 ~~~~Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~ 89 (94)
...-|+.|.+ +|+.++|||++|++|++||..||..-+.|+.... .+..+..+.|+.+|+|+|+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs 772 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYS 772 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHc
Confidence 4455777766 7788999999999999999999999888876644 5556789999999999994
No 12
>KOG2838|consensus
Probab=98.74 E-value=1.6e-08 Score=69.70 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=64.2
Q ss_pred hHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc---ccCCCCHHHHHHhhhhhcC
Q psy5169 13 HANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN---FLSSFAFKIFECLVYFWTP 89 (94)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~---~l~~v~~~~~~~ll~fly~ 89 (94)
...++.++...+......|+-|+.....|||||++||+|+|+|+.+...+.......+ ..-+++.++|+.+|.++|+
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 3456777888888888899999999999999999999999999988877543332322 3458999999999999998
Q ss_pred Ce
Q psy5169 90 CT 91 (94)
Q Consensus 90 ~~ 91 (94)
|.
T Consensus 194 gE 195 (401)
T KOG2838|consen 194 GE 195 (401)
T ss_pred cc
Confidence 85
No 13
>KOG4682|consensus
Probab=98.57 E-value=5.3e-08 Score=69.87 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc---cc--CCCCHHHHHHhhhhhcCCeec
Q psy5169 20 FHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN---FL--SSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 20 l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~---~l--~~v~~~~~~~ll~fly~~~v~ 93 (94)
+..++.+|.-+||++.+-|++++.||.-|.. |+||.+||+|.+.|+...+ +| +.|+.+++..++.=||.+.|+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 4578889999999999999999999999987 8999999999999987754 33 369999999999999998875
No 14
>KOG2838|consensus
Probab=97.78 E-value=1.2e-05 Score=55.75 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhCCCceeEEEE--ECCe--------------EEEhhHHHHhhcCHHHHhcCCCCCCCCC----------
Q psy5169 14 ANLTTGFHGLFEDEDLVDVSLA--VEGK--------------IIQAHKVILSVCSPYFIKCPPKKLGQSE---------- 67 (94)
Q Consensus 14 ~~~~~~l~~~~~~~~~~Dv~l~--~~~~--------------~~~~Hk~vLa~~S~yF~~~f~~~~~e~~---------- 67 (94)
..+-.+++.+++.....|+.|. ++|+ +++||++|.|+||++||.++...-.+..
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 3455677888888877776664 3432 5999999999999999998754322211
Q ss_pred CccccCC-CCHHHH-HHhhhhhcCCeec
Q psy5169 68 NTNFLSS-FAFKIF-ECLVYFWTPCTVK 93 (94)
Q Consensus 68 ~~~~l~~-v~~~~~-~~ll~fly~~~v~ 93 (94)
..+.+++ |=|..+ -.+|.+|||..++
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccc
Confidence 1122221 333333 4678999998875
No 15
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.69 E-value=0.00012 Score=39.72 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=43.1
Q ss_pred EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhc
Q psy5169 32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWT 88 (94)
Q Consensus 32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly 88 (94)
++|+. ||+.|.+.+.+.. .|..++.|+.+...+.. .+++++++..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHH
Confidence 45655 8899999999877 58999999976443333 56899999999999999974
No 16
>KOG0511|consensus
Probab=97.15 E-value=0.00034 Score=50.54 Aligned_cols=53 Identities=17% Similarity=-0.011 Sum_probs=43.3
Q ss_pred eEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-----ccCCCCHHHHHHhhhhhcCCee
Q psy5169 39 KIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-----FLSSFAFKIFECLVYFWTPCTV 92 (94)
Q Consensus 39 ~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-----~l~~v~~~~~~~ll~fly~~~v 92 (94)
..+|||+++++. .+||+.||.+++.|+.... .+|.....+.+..++|+|+.+.
T Consensus 301 ~RyP~hla~i~R-~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t 358 (516)
T KOG0511|consen 301 DRYPAHLARILR-VEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT 358 (516)
T ss_pred ccccHHHHHHHH-HHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc
Confidence 449999999987 5999999999988854211 5677888899999999998764
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.00 E-value=0.00033 Score=40.61 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=43.4
Q ss_pred EEEEECCeEEEhhHHHHh-hcCHHHHhcCCCC---CCCCCCccccCCCCHHHHHHhhhhhcC
Q psy5169 32 VSLAVEGKIIQAHKVILS-VCSPYFIKCPPKK---LGQSENTNFLSSFAFKIFECLVYFWTP 89 (94)
Q Consensus 32 v~l~~~~~~~~~Hk~vLa-~~S~yF~~~f~~~---~~e~~~~~~l~~v~~~~~~~ll~fly~ 89 (94)
|.|.|||+.|..-+..|. ...++|.+++... ..........-|-+|..|+.+|+|+-+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhh
Confidence 678999999999999998 5567899998864 112222333335899999999999977
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.95 E-value=0.0028 Score=37.57 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=43.6
Q ss_pred EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC--CccccCCCCHHHHHHhhhhhc
Q psy5169 32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSE--NTNFLSSFAFKIFECLVYFWT 88 (94)
Q Consensus 32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~--~~~~l~~v~~~~~~~ll~fly 88 (94)
++++. +|..|.+.+.+.. .|..++.|+.+...+.. ..+++++|+..+|+.+++|++
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~ 62 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCE 62 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHH
Confidence 55654 8899999999875 68999999876432222 345999999999999999985
No 19
>KOG0511|consensus
Probab=96.34 E-value=0.0011 Score=47.96 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=44.1
Q ss_pred CceeEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCC
Q psy5169 28 DLVDVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPC 90 (94)
Q Consensus 28 ~~~Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~ 90 (94)
...|+++.. .|+.|-|||..|++||++|...+..-+...++.+.. .+-+.+|..++.|+|-.
T Consensus 148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~-~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAH-RVILSAFSPFLKQLYLN 210 (516)
T ss_pred cccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhh-hhhHhhhhHHHHHHHHh
Confidence 457888876 778899999999999998865554433333332222 36778899999998744
No 20
>KOG2716|consensus
Probab=96.31 E-value=0.0099 Score=40.29 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=49.1
Q ss_pred EEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCC-CCCCcc-ccCCCCHHHHHHhhhhhcCCee
Q psy5169 32 VSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG-QSENTN-FLSSFAFKIFECLVYFWTPCTV 92 (94)
Q Consensus 32 v~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~-e~~~~~-~l~~v~~~~~~~ll~fly~~~v 92 (94)
|.+-|||..|...+.-|.....+|++|+..+.. +....- ..-|=+|.-|+.+|+||=.|.+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv 69 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDV 69 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccc
Confidence 446789999999999999999999999998754 222222 4556899999999999987765
No 21
>KOG1987|consensus
Probab=94.89 E-value=0.0068 Score=41.75 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=45.9
Q ss_pred eeEEEEE--CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCC
Q psy5169 30 VDVSLAV--EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPC 90 (94)
Q Consensus 30 ~Dv~l~~--~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~ 90 (94)
-|+.... .+..+.+|++++++++++|+.|+..+..+..... .+.+.++..++.+..|.|+.
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~ 162 (297)
T KOG1987|consen 99 LPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLP 162 (297)
T ss_pred cChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEec
Confidence 4444433 3566999999999999999999987654443333 77788999999999998873
No 22
>KOG2714|consensus
Probab=93.86 E-value=0.16 Score=37.46 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=47.3
Q ss_pred EEEEECCeEEEhhHHHHhhcC--HHHHhcCCCCCCCCCCcc--ccCCCCHHHHHHhhhhhcCCeec
Q psy5169 32 VSLAVEGKIIQAHKVILSVCS--PYFIKCPPKKLGQSENTN--FLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 32 v~l~~~~~~~~~Hk~vLa~~S--~yF~~~f~~~~~e~~~~~--~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
|.|-|||+.|.--+.-|+... .+|-+++++.+.-..... ..-|=+|+.|..+|+||-|+.+.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~ 78 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD 78 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC
Confidence 556789999998888887766 588999987654333222 33358999999999999998753
No 23
>KOG3473|consensus
Probab=93.75 E-value=0.17 Score=30.08 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCC--CCcc-ccCCCCHHHHHHhhhhh
Q psy5169 32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQS--ENTN-FLSSFAFKIFECLVYFW 87 (94)
Q Consensus 32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~--~~~~-~l~~v~~~~~~~ll~fl 87 (94)
|.++. +|++|-.-|-+-.. |.-.|+|+.+....+ .... .+++++...++.+.+|+
T Consensus 19 VkLvS~Ddhefiikre~Amt-SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl 77 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREHAMT-SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL 77 (112)
T ss_pred eEeecCCCcEEEEeehhhhh-hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence 34444 67777666665444 789999999875544 3333 89999999999999997
No 24
>KOG4390|consensus
Probab=83.68 E-value=2 Score=31.86 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=43.5
Q ss_pred EEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCC----CCCccccCCCCHHHHHHhhhhhcCCeecC
Q psy5169 32 VSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQ----SENTNFLSSFAFKIFECLVYFWTPCTVKY 94 (94)
Q Consensus 32 v~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e----~~~~~~l~~v~~~~~~~ll~fly~~~v~~ 94 (94)
+++.+.|+.|.-+|.-|-. |-+.++.+..+| .+.....-|-+|+.|+++|+|+-||+..|
T Consensus 42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHy 105 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHY 105 (632)
T ss_pred EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccC
Confidence 3445689999999998876 555666554332 12223566789999999999999998765
No 25
>KOG1724|consensus
Probab=80.20 E-value=5.7 Score=25.62 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=38.3
Q ss_pred ECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC-CccccCCCCHHHHHHhhhhhcC
Q psy5169 36 VEGKIIQAHKVILSVCSPYFIKCPPKKLGQSE-NTNFLSSFAFKIFECLVYFWTP 89 (94)
Q Consensus 36 ~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~-~~~~l~~v~~~~~~~ll~fly~ 89 (94)
.+|+.|.+-..+... |.-..+++........ ..++|+.|...+|+.+|+|.+-
T Consensus 12 sDG~~f~ve~~~a~~-s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 12 SDGEIFEVEEEVARQ-SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK 65 (162)
T ss_pred cCCceeehhHHHHHH-hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence 388889888887655 6777776654322222 3459999999999999999854
No 26
>KOG3342|consensus
Probab=76.95 E-value=1.8 Score=27.90 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=14.1
Q ss_pred eE-EEEECCeEEE-hhHHHH
Q psy5169 31 DV-SLAVEGKIIQ-AHKVIL 48 (94)
Q Consensus 31 Dv-~l~~~~~~~~-~Hk~vL 48 (94)
|+ ++.++|+.|| +||+|=
T Consensus 82 divVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 82 DIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred cEEEEEECCccCchhHHHHH
Confidence 44 4578999999 899884
No 27
>KOG1665|consensus
Probab=73.98 E-value=5.3 Score=27.56 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred EEEEECCeEEEhhHHHHhhcCH--HHHhcCCCCCCCCCC---ccccCCCCHHHHHHhhhhhcCCee
Q psy5169 32 VSLAVEGKIIQAHKVILSVCSP--YFIKCPPKKLGQSEN---TNFLSSFAFKIFECLVYFWTPCTV 92 (94)
Q Consensus 32 v~l~~~~~~~~~Hk~vLa~~S~--yF~~~f~~~~~e~~~---~~~l~~v~~~~~~~ll~fly~~~v 92 (94)
|.+-+||+.|.--+--|..+-| -..+||.+....... .-.+-|-+|..|+.+|+|+--|++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~ 76 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQI 76 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCce
Confidence 5567788888766666655554 567788775432222 226667899999999999987765
No 28
>KOG3840|consensus
Probab=71.60 E-value=7 Score=28.16 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=44.9
Q ss_pred CceeEEEEECCeEEEhhHHHHhhcCH-HHHhcCCCCCC-----CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169 28 DLVDVSLAVEGKIIQAHKVILSVCSP-YFIKCPPKKLG-----QSENTNFLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 28 ~~~Dv~l~~~~~~~~~Hk~vLa~~S~-yF~~~f~~~~~-----e~~~~~~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
.---++..+++..|-+-+.+|.+.-. -.-+||.++.. |...-..-++++..+|+.+|+|+-+|++.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iR 165 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMR 165 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCcee
Confidence 33346777888888888888876432 34566665532 22222256789999999999999998874
No 29
>KOG1778|consensus
Probab=59.90 E-value=1.5 Score=31.23 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=38.3
Q ss_pred ECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCc-cccCCCCHHHHHHhhhhhcCC
Q psy5169 36 VEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENT-NFLSSFAFKIFECLVYFWTPC 90 (94)
Q Consensus 36 ~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~-~~l~~v~~~~~~~ll~fly~~ 90 (94)
.....+++|+.+|+..|+.|..+....-..+... ..+-+++...+..+..++|.+
T Consensus 33 ~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 33 DVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 4556799999999999999987765542211111 245567777888888888865
No 30
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=56.43 E-value=20 Score=21.47 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=14.8
Q ss_pred EEEEE-CCeEEEhhHHHHhh
Q psy5169 32 VSLAV-EGKIIQAHKVILSV 50 (94)
Q Consensus 32 v~l~~-~~~~~~~Hk~vLa~ 50 (94)
|+|.+ +...-.|||.||+.
T Consensus 101 v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 101 VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred eEEEEEecChhcCcHHHHHH
Confidence 78877 44557899999985
No 31
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=55.14 E-value=22 Score=20.95 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=35.8
Q ss_pred EEEEECC--eEEEhhHHHHhhcCHHHHhcCCCCCCC----CCCccccCCCCHHHHHHhhhhh
Q psy5169 32 VSLAVEG--KIIQAHKVILSVCSPYFIKCPPKKLGQ----SENTNFLSSFAFKIFECLVYFW 87 (94)
Q Consensus 32 v~l~~~~--~~~~~Hk~vLa~~S~yF~~~f~~~~~e----~~~~~~l~~v~~~~~~~ll~fl 87 (94)
+.+.||+ +.|-+....|.. |.|+.++.....| ....+.|| ++...|+.+|..|
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L~h--p~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYLNH--PLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHcCc--hhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 5666766 457677777765 8999998654322 12334666 8999999998764
No 32
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=53.81 E-value=26 Score=25.13 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.9
Q ss_pred eEEEhhHHHHhhcCHHHHhcCCC---CCCCCCCccccC-CCCHHHHHHhhhhhcCC
Q psy5169 39 KIIQAHKVILSVCSPYFIKCPPK---KLGQSENTNFLS-SFAFKIFECLVYFWTPC 90 (94)
Q Consensus 39 ~~~~~Hk~vLa~~S~yF~~~f~~---~~~e~~~~~~l~-~v~~~~~~~ll~fly~~ 90 (94)
+.|.|.+-+|-..=.||+..+.. +..+. +.++|. ..+-.+|+=|++|+.+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~-~~idisVhCDv~iF~WLm~yv~~~ 68 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRW-EEIDISVHCDVHIFEWLMRYVKGE 68 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcC-CCcceEEecChhHHHHHHHHhhcC
Confidence 56999999999999999999965 22222 223322 57888999999999874
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=50.70 E-value=41 Score=21.20 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=38.6
Q ss_pred EEEE-ECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhh
Q psy5169 32 VSLA-VEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFW 87 (94)
Q Consensus 32 v~l~-~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fl 87 (94)
|.+. .+|+.|.+.+.+ |-+|-..+.|+... .+....++.+.|...+|..+++|+
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n~p~p~pnVrSsvl~kv~ew~ 58 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDS-TACNYPIPAPNVRSSVLMKVQEWM 58 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccCCCCcccchhHHHHHHHHHHH
Confidence 4454 477888877765 66788888877542 233334577889999999999997
No 34
>KOG3713|consensus
Probab=50.19 E-value=63 Score=24.55 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=19.9
Q ss_pred cccCCCCHHHHHHhhhhhcCCeec
Q psy5169 70 NFLSSFAFKIFECLVYFWTPCTVK 93 (94)
Q Consensus 70 ~~l~~v~~~~~~~ll~fly~~~v~ 93 (94)
+..-|=+|.+|..+++|+.||++.
T Consensus 82 EyfFDR~P~~F~~Vl~fYrtGkLH 105 (477)
T KOG3713|consen 82 EYFFDRHPGAFAYVLNFYRTGKLH 105 (477)
T ss_pred eeeeccChHHHHHHHHHHhcCeec
Confidence 344468899999999999999875
No 35
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=50.12 E-value=10 Score=23.22 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=32.4
Q ss_pred CCeEEEhhHHHHhhcCHHHHhc-CCCCCCCCCCcc--ccC-CCCHHHHHHhhhhhcCCe
Q psy5169 37 EGKIIQAHKVILSVCSPYFIKC-PPKKLGQSENTN--FLS-SFAFKIFECLVYFWTPCT 91 (94)
Q Consensus 37 ~~~~~~~Hk~vLa~~S~yF~~~-f~~~~~e~~~~~--~l~-~v~~~~~~~ll~fly~~~ 91 (94)
++..+.+|--+++++||..... |.=+. ....+ +.+ .--.+.....+.++|.+.
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY--~~~~ii~PFDFNglEe~I~~~l~~mY~~s 76 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPY--THEGIIPPFDFNGLEEGIKNTLKIMYKDS 76 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEec--cCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence 5678999999999999987432 21111 11112 111 123456788888888764
No 36
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=43.58 E-value=24 Score=24.05 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.3
Q ss_pred CCCceeEEEEECCeEEEhhHHHHhhcCHHHHhc
Q psy5169 26 DEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKC 58 (94)
Q Consensus 26 ~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~ 58 (94)
++...||+++++|. |+-++||..+
T Consensus 10 ~~~~~~vVfvvEgT---------Aalgpy~~~L 33 (226)
T PF11265_consen 10 QPPQAQVVFVVEGT---------AALGPYWNTL 33 (226)
T ss_pred cCccceEEEEEecc---------hhhhhhHHHH
Confidence 36788999999997 5667777654
No 37
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=41.51 E-value=2.1 Score=25.09 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=32.6
Q ss_pred eeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHh
Q psy5169 4 QYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECL 83 (94)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~l 83 (94)
.-.|.+++++.++...|..+..++. -..|+|-+-+..++.+.---...|.+++|.+++-+
T Consensus 17 Gk~FRPSDWaERL~gvla~F~~~~r--------------------l~Ys~~~~P~~~~GvkcVvVd~~L~~~~P~af~fv 76 (92)
T PF12112_consen 17 GKTFRPSDWAERLCGVLASFRPDHR--------------------LSYSPYVRPMVINGVKCVVVDERLRDIEPMAFDFV 76 (92)
T ss_dssp S-B-S-TTHHHHHHHTT-EE-SSSS--------------------EE--TTEEE--BTTB--EEEETHHHHH-HHHHHHH
T ss_pred CCCcCCccHHHHHHHHHHccCCCCc--------------------eEecCcccceEECCEEEEEEccHhhhcChHHHHHH
Confidence 3456777777777766666544441 12356665555332211100116778999999999
Q ss_pred hhhhcC
Q psy5169 84 VYFWTP 89 (94)
Q Consensus 84 l~fly~ 89 (94)
++|...
T Consensus 77 m~FA~d 82 (92)
T PF12112_consen 77 MNFAKD 82 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999643
No 38
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=41.29 E-value=42 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhhhCCCceeEEEEECCe
Q psy5169 13 HANLTTGFHGLFEDEDLVDVSLAVEGK 39 (94)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~ 39 (94)
+..+...+..++..| .|++|.+||.
T Consensus 82 Se~fA~~l~~~~~~G--~~i~f~IGG~ 106 (155)
T COG1576 82 SEEFADFLERLRDDG--RDISFLIGGA 106 (155)
T ss_pred hHHHHHHHHHHHhcC--CeEEEEEeCc
Confidence 345556778888888 9999999884
No 39
>KOG2485|consensus
Probab=40.57 E-value=70 Score=23.15 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=38.5
Q ss_pred CchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCC
Q psy5169 11 NFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPP 60 (94)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~ 60 (94)
-++.++..+++.+.+.-...|++|.+-|-.|| |+++-+.|+....
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiP-----Lssrn~~~~~~~~ 72 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIP-----LSSRNELFQDFLP 72 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccC-----CccccHHHHHhcC
Confidence 47889999999999989999999999887777 7888888887765
No 40
>KOG3863|consensus
Probab=40.47 E-value=2.5 Score=32.62 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.6
Q ss_pred HHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCC
Q psy5169 19 GFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPK 61 (94)
Q Consensus 19 ~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~ 61 (94)
.++..++....||+++.+..+.|.+|+ +|.||....-|
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G 41 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVG 41 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhhhhcc
Confidence 456678888999999999999999999 78899766544
No 41
>KOG2715|consensus
Probab=39.55 E-value=49 Score=21.89 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred eEEEEECCeEEEhhHHHHhhcCHHH-HhcCCCCCCC---CCCc-cccCCCCHHHHHHhhhhhcCCe
Q psy5169 31 DVSLAVEGKIIQAHKVILSVCSPYF-IKCPPKKLGQ---SENT-NFLSSFAFKIFECLVYFWTPCT 91 (94)
Q Consensus 31 Dv~l~~~~~~~~~Hk~vLa~~S~yF-~~~f~~~~~e---~~~~-~~l~~v~~~~~~~ll~fly~~~ 91 (94)
=|.+-|||..|.--|.-|+.-+.-| .++.+....- .... -.+-|=+|.-|..+|+|+--|+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgk 87 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGK 87 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcch
Confidence 3566789999999999999888555 5555443221 1111 2666789999999999986544
No 42
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=38.50 E-value=1.7e+02 Score=25.68 Aligned_cols=83 Identities=8% Similarity=0.113 Sum_probs=51.2
Q ss_pred eeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc--ccCCCCHHHHHH
Q psy5169 5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN--FLSSFAFKIFEC 82 (94)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~--~l~~v~~~~~~~ 82 (94)
+++....+-......+.+..++..--++.+...|.++..|.-||+- +|.+.|.-+....+..+ .+-..+.+....
T Consensus 1140 ~~i~Fs~~eee~~~Dvk~aL~~~fG~g~~iyerg~~i~V~SRil~~---lF~~vLk~G~na~~KRIP~~lF~ap~e~v~~ 1216 (1627)
T PRK14715 1140 YQINFSNAEEEVREDIKKALREAFGDGFGIYERGGKVTVGSRILYL---LFTEVLKAGKNAHSKRVPSFVFKLPKEKVKL 1216 (1627)
T ss_pred eEEEeccchHHHHHHHHHHHHHhcccCceeeccCCeeeechHHHHH---HHHHHHhcCCCcccccCCHHHhcCcHHHHHH
Confidence 4455555555555555555444444445555677789999888875 77777766544444444 444567777777
Q ss_pred hhhhhcCC
Q psy5169 83 LVYFWTPC 90 (94)
Q Consensus 83 ll~fly~~ 90 (94)
+|.-++.|
T Consensus 1217 ~LkglF~G 1224 (1627)
T PRK14715 1217 MLSAYFEG 1224 (1627)
T ss_pred HHHHhccC
Confidence 77766654
No 43
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=36.34 E-value=57 Score=16.29 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=18.2
Q ss_pred hhhCCCceeEEEEECCeEEEhh
Q psy5169 23 LFEDEDLVDVSLAVEGKIIQAH 44 (94)
Q Consensus 23 ~~~~~~~~Dv~l~~~~~~~~~H 44 (94)
+...+.+|.+.+..|+.++.|.
T Consensus 19 ~l~r~sLCEl~i~~g~~evaA~ 40 (43)
T PF01848_consen 19 WLTRDSLCELRIKDGNTEVAAF 40 (43)
T ss_pred HHhccCcEEEEEecCCEEEEEE
Confidence 4557889999999999998764
No 44
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.81 E-value=16 Score=20.71 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=11.0
Q ss_pred EEEECCeEEEhhHHHH
Q psy5169 33 SLAVEGKIIQAHKVIL 48 (94)
Q Consensus 33 ~l~~~~~~~~~Hk~vL 48 (94)
.+..+|..||-||+|-
T Consensus 48 ~~~~~~~~IP~HRIve 63 (77)
T COG1531 48 YLLYQGTYIPYHRIVE 63 (77)
T ss_pred EEEecCceeeeEEEEE
Confidence 3445677888888763
No 45
>PRK09738 small toxic polypeptide; Provisional
Probab=33.18 E-value=62 Score=16.91 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.8
Q ss_pred hhhhCCCceeEEEEECCeEEEhh
Q psy5169 22 GLFEDEDLVDVSLAVEGKIIQAH 44 (94)
Q Consensus 22 ~~~~~~~~~Dv~l~~~~~~~~~H 44 (94)
-+...+.+|++.+.-|+.++.|.
T Consensus 23 ~~l~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 23 TYLTRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred HHHccCCceEEEEecCCEEEEEE
Confidence 34567889999999999988764
No 46
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=33.01 E-value=9.3 Score=24.65 Aligned_cols=11 Identities=36% Similarity=0.371 Sum_probs=8.9
Q ss_pred EEhhHHHHhhc
Q psy5169 41 IQAHKVILSVC 51 (94)
Q Consensus 41 ~~~Hk~vLa~~ 51 (94)
|||||+|=+..
T Consensus 137 IPCHRVig~~G 147 (168)
T COG0350 137 IPCHRVIGADG 147 (168)
T ss_pred ecCeEeEcCCC
Confidence 89999986654
No 47
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.67 E-value=8.6 Score=21.74 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.4
Q ss_pred EEEhhHHHHhhcC
Q psy5169 40 IIQAHKVILSVCS 52 (94)
Q Consensus 40 ~~~~Hk~vLa~~S 52 (94)
.+||||+|=+..+
T Consensus 50 ~iPcHRVv~s~G~ 62 (80)
T TIGR00589 50 LVPCHRVIGKNGS 62 (80)
T ss_pred CCCCceeECCCCC
Confidence 5899999977753
No 48
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=27.96 E-value=69 Score=14.48 Aligned_cols=16 Identities=19% Similarity=0.222 Sum_probs=13.0
Q ss_pred ccCCCCHHHHHHhhhh
Q psy5169 71 FLSSFAFKIFECLVYF 86 (94)
Q Consensus 71 ~l~~v~~~~~~~ll~f 86 (94)
.+++|.+.+-+.++.|
T Consensus 15 ~lpGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 15 KLPGIGPKTANAILSF 30 (30)
T ss_dssp TSTT-SHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHhC
Confidence 7899999998888876
No 49
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=27.95 E-value=55 Score=17.13 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=14.4
Q ss_pred HHHHhhhhCCCceeEEEEE
Q psy5169 18 TGFHGLFEDEDLVDVSLAV 36 (94)
Q Consensus 18 ~~l~~~~~~~~~~Dv~l~~ 36 (94)
.-+..++++|-+||..|..
T Consensus 34 ~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 34 DVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHHcCCCcceeeec
Confidence 3456678899999988764
No 50
>PRK09759 small toxic polypeptide; Provisional
Probab=27.53 E-value=92 Score=16.12 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=18.3
Q ss_pred hhhCCCceeEEEEECCeEEEhh
Q psy5169 23 LFEDEDLVDVSLAVEGKIIQAH 44 (94)
Q Consensus 23 ~~~~~~~~Dv~l~~~~~~~~~H 44 (94)
+...+.+|.+.+.-|+.++.|.
T Consensus 22 ~l~r~sLCEl~i~~g~~evaA~ 43 (50)
T PRK09759 22 WMIRDSLCELHIKQGSYELAAF 43 (50)
T ss_pred HHhCCCceEEEEecCCEEEEEE
Confidence 4567789999999999988764
No 51
>PF11889 DUF3409: Domain of unknown function (DUF3409); InterPro: IPR021824 This domain is functionally uncharacterised. This domain is found in viruses. This presumed domain is about 60 amino acids in length. This domain is found associated with PF00271 from PFAM, PF05550 from PFAM, PF05578 from PFAM. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=26.71 E-value=38 Score=17.80 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=12.8
Q ss_pred ceeEEEEECCeEEEhh
Q psy5169 29 LVDVSLAVEGKIIQAH 44 (94)
Q Consensus 29 ~~Dv~l~~~~~~~~~H 44 (94)
-.|.+|+++|..+.+-
T Consensus 35 PPdativv~GvKYQVk 50 (56)
T PF11889_consen 35 PPDATIVVDGVKYQVK 50 (56)
T ss_pred CCCceEEEeeeEEEEe
Confidence 4689999999887654
No 52
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.78 E-value=61 Score=18.86 Aligned_cols=16 Identities=6% Similarity=0.191 Sum_probs=13.2
Q ss_pred CCCHHHHHHhhhhhcC
Q psy5169 74 SFAFKIFECLVYFWTP 89 (94)
Q Consensus 74 ~v~~~~~~~ll~fly~ 89 (94)
.++|++|+.+|+.+--
T Consensus 40 ~~dp~VFriildLL~~ 55 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRL 55 (88)
T ss_pred CcChHHHHHHHHHHHc
Confidence 4799999999998743
No 53
>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=25.52 E-value=12 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=9.9
Q ss_pred EEEhhHHHHhhcC
Q psy5169 40 IIQAHKVILSVCS 52 (94)
Q Consensus 40 ~~~~Hk~vLa~~S 52 (94)
.+||||+|=+..+
T Consensus 121 iIPCHRVv~~~G~ 133 (155)
T PRK00901 121 FIPCHRVIGANGK 133 (155)
T ss_pred ccCCceEECCCCC
Confidence 3899999976653
No 54
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=25.40 E-value=24 Score=20.07 Aligned_cols=14 Identities=0% Similarity=-0.054 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhcCC
Q psy5169 77 FKIFECLVYFWTPC 90 (94)
Q Consensus 77 ~~~~~~ll~fly~~ 90 (94)
..++..=++||||=
T Consensus 64 RRtL~AHlDYIYTQ 77 (81)
T PF06404_consen 64 RRTLAAHLDYIYTQ 77 (81)
T ss_pred HHHHHHHhhheecc
Confidence 34455667899984
No 55
>PLN03090 auxin-responsive family protein; Provisional
Probab=23.02 E-value=93 Score=18.64 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=33.2
Q ss_pred EEEEECC--eEEEhhHHHHhhcCHHHHhcCCCCCCC---CC-CccccCCCCHHHHHHhhhhh
Q psy5169 32 VSLAVEG--KIIQAHKVILSVCSPYFIKCPPKKLGQ---SE-NTNFLSSFAFKIFECLVYFW 87 (94)
Q Consensus 32 v~l~~~~--~~~~~Hk~vLa~~S~yF~~~f~~~~~e---~~-~~~~l~~v~~~~~~~ll~fl 87 (94)
+.+.+|+ +.|-.+-..|.. |.|+.++.....| .+ ..+.+| ++...|+.++..|
T Consensus 45 ~aVyVG~~~~RfvVp~~~L~h--P~F~~LL~~aeeEfGf~~~G~L~IP-C~~~~Fe~ll~~i 103 (104)
T PLN03090 45 FPVYVGENRSRYIVPISFLTH--PEFQSLLQQAEEEFGFDHDMGLTIP-CEEVVFRSLTSMI 103 (104)
T ss_pred EEEEECCCCEEEEEEHHHcCC--HHHHHHHHHHHHHhCCCCCCcEEEe-CCHHHHHHHHHHh
Confidence 4555654 356666666654 8999888543211 22 234666 8999999998754
No 56
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.02 E-value=1.3e+02 Score=18.07 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHhhhhCCCceeEEEEECCeE
Q psy5169 10 NNFHANLTTGFHGLFEDEDLVDVSLAVEGKI 40 (94)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~ 40 (94)
.+....+.+.+.++..+ +|++|..||..
T Consensus 42 ~Dd~~~i~~~i~~~~~~---~DlvittGG~g 69 (133)
T cd00758 42 PDDADSIRAALIEASRE---ADLVLTTGGTG 69 (133)
T ss_pred CCCHHHHHHHHHHHHhc---CCEEEECCCCC
Confidence 34566677777777654 79999998743
No 57
>KOG2873|consensus
Probab=21.40 E-value=1.1e+02 Score=21.59 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcC
Q psy5169 47 ILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTP 89 (94)
Q Consensus 47 vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~ 89 (94)
+||+ ..+|++|.+.. ++++..++.+++|++.
T Consensus 221 vLA~--alWRnlF~~r~----------~~D~~hle~vV~YvR~ 251 (284)
T KOG2873|consen 221 VLAT--ALWRNLFSGRG----------NVDLVHLEAVVRYVRS 251 (284)
T ss_pred HHHH--HHHHHHhCCCC----------CcCHHHHHHHHHHHHH
Confidence 7777 49999997642 5888899999999864
No 58
>KOG2869|consensus
Probab=20.44 E-value=1.1e+02 Score=22.33 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEE--CCeEEEhhHHHHhhcCHHHHhcCCCC
Q psy5169 2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAV--EGKIIQAHKVILSVCSPYFIKCPPKK 62 (94)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~--~~~~~~~Hk~vLa~~S~yF~~~f~~~ 62 (94)
+..+.+.-.+|.+-.++.++..-+...-+|+..++ +|- ||-+.+...|...|+.....
T Consensus 107 ~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGl---a~IcLvt~s~tilr~kIe~s 166 (379)
T KOG2869|consen 107 NRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGL---AHICLVTKSSTILRAKIEVS 166 (379)
T ss_pred CCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCc---eeEEEechhHHHHHHhhhcc
Confidence 34667777788888888888888888889988877 443 77777888888887766544
Done!