RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5169
(94 letters)
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab)
or POZ (for Pox virus and Zinc finger) domain is
present near the N-terminus of a fraction of zinc
finger (pfam00096) proteins and in proteins that
contain the pfam01344 motif such as Kelch and a family
of pox virus proteins. The BTB/POZ domain mediates
homomeric dimerisation and in some instances
heteromeric dimerisation. The structure of the
dimerised PLZF BTB/POZ domain has been solved and
consists of a tightly intertwined homodimer. The
central scaffolding of the protein is made up of a
cluster of alpha-helices flanked by short beta-sheets
at both the top and bottom of the molecule. POZ domains
from several zinc finger proteins have been shown to
mediate transcriptional repression and to interact with
components of histone deacetylase co-repressor
complexes including N-CoR and SMRT. The POZ or BTB
domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 55.7 bits (135), Expect = 8e-12
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 20 FHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKL--GQSENTNFLSSFAF 77
+ L E+ +L DV+L V K AHK +L+ CSPYF K L G E L +
Sbjct: 1 LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYF-----KALFTGNKEVEITLEDVSP 55
Query: 78 KIFECLVYF 86
+ FE L+ F
Sbjct: 56 EDFEALLEF 64
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac.
Domain in Broad-Complex, Tramtrack and Bric a brac.
Also known as POZ (poxvirus and zinc finger) domain.
Known to be a protein-protein interaction motif found
at the N-termini of several C2H2-type transcription
factors as well as Shaw-type potassium channels. Known
structure reveals a tightly intertwined dimer formed
via interactions between N-terminal strand and helix
structures. However in a subset of BTB/POZ domains,
these two secondary structures appear to be missing. Be
aware SMART predicts BTB/POZ domains without the beta1-
and alpha1-secondary structures.
Length = 97
Score = 41.1 bits (97), Expect = 4e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 31 DVSLAVEGKIIQAHKVILSVCSPYF 55
DV+L V GK AHK +L+ SPYF
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYF 25
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 29.7 bits (67), Expect = 0.14
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 28 DLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+ + G II+ HK+ILS S YF
Sbjct: 10 CDESIIIVNGGGIIKVHKIILSSSSEYF 37
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 29.2 bits (65), Expect = 0.23
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 23 LFEDEDLVDVSLAV-EGKIIQAHKVILSVCSPYF 55
L +D+ L DV + + +G+ I+AHK IL+ S YF
Sbjct: 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYF 52
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs
encoded by tandem genes in Proteobacteria, spirochetes,
and some other bacterial lineages. The HflKC complex is
anchored in the membrane and exposed to the periplasm.
The complex is not active as a protease, but rather
binds to and appears to modulate the ATP-dependent
protease FtsH. The overall function of HflKC is not
fully described.//Regulation of FtsH by HflKC appears
to be negative (PMID:8947034,PMID:96367) [SS 8/27/03].
Length = 261
Score = 28.9 bits (65), Expect = 0.26
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 23 LFEDEDLVDVSLAVEGKIIQAHKVILSVCSP 53
L DE++V+V + V+ +I +K + SV +P
Sbjct: 54 LTGDENIVNVEMNVQYRITDPYKYLFSVENP 84
>gnl|CDD|197207 cd09108, PLDc_PMFPLD_like_1, Catalytic domain, repeat 1, of
phospholipase D from Streptomyces Sp. Strain PMF and
similar proteins. Catalytic domain, repeat 1, of
phospholipases D (PLD, EC 3.1.4.4) from Streptomyces Sp.
Strain PMF (PMFPLD) and similar proteins, which are
generally extracellular and bear N-terminal signal
sequences. PMFPLD hydrolyzes the terminal phosphodiester
bond of phospholipids with the formation of phosphatidic
acid and alcohols. Phosphatidic acid is an essential
compound involved in signal transduction. It also
catalyzes a transphosphatidylation of phospholipids to
acceptor alcohols, by which various phospholipids can be
synthesized. In contrast to eukaryotic PLDs, PMFPLD has
a compact structure, which consists of two catalytic
domains, but lacks the regulatory domains. Each
catalytic domain contains one copy of the HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue) that characterizes the PLD superfamily. Two HKD
motifs from two domains form a single active site. Like
other PLD enzymes, PMFPLD may utilize a common two-step
ping-pong catalytic mechanism involving an
enzyme-substrate intermediate to cleave phosphodiester
bonds. The two histidine residues from the two HKD
motifs play key roles in the catalysis. Upon substrate
binding, a histidine residue from one HKD motif could
function as the nucleophile, attacking the
phosphodiester bond to create a covalent
phosphohistidine intermediate, while the other histidine
residue from the second HKD motif could serve as a
general acid, stabilizing the leaving group. A
calcium-dependent PLD from Streptomyce chromofuscus is
excluded from this family, since it displays very little
sequence homology with other Streptomyces PLDs.
Moreover, it does not contain the conserved HKD motif
and hydrolyzes the phospholipids via a different
mechanism.
Length = 210
Score = 27.8 bits (62), Expect = 0.63
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 17/57 (29%)
Query: 5 YSLKWNNFHAN--------LTTGFHGLFEDE------DLVDVSLAVEGKIIQ-AHKV 46
Y L WN HA L TG + L++D + D+SL V G + +
Sbjct: 151 YFLPWN--HAKLLVVDGEELLTGGYNLWDDHYLDGGNPVHDLSLVVRGPAARSGVRF 205
>gnl|CDD|237141 PRK12569, PRK12569, hypothetical protein; Provisional.
Length = 245
Score = 28.0 bits (63), Expect = 0.70
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 14 ANLTTGFH-GLFEDEDLVD--VSLAVEGKI-IQAH 44
AN+ TGFH G D +++ V LA + I AH
Sbjct: 35 ANIATGFHAG---DPNIMRRTVELAKAHGVGIGAH 66
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 23 LFEDEDLVDVSLAVEGKIIQA 43
+++D V+V L V GK + A
Sbjct: 303 IYDDNGQVEVKLEVGGKTLWA 323
>gnl|CDD|239461 cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase (TyrOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tryptophan hydroxylase (TrpOH). TyrOH catalyzes the
conversion of tyrosine to L-dihydroxyphenylalanine
(L-DOPA), the rate-limiting step in the biosynthesis of
the catecholamines dopamine, noradrenaline, and
adrenaline.
Length = 298
Score = 26.2 bits (58), Expect = 2.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 70 NFLSSFAFKIFECLVY 85
+FL+S AF++F+C Y
Sbjct: 134 DFLASLAFRVFQCTQY 149
>gnl|CDD|179572 PRK03371, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase 2;
Provisional.
Length = 326
Score = 26.3 bits (58), Expect = 2.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 11 NFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPP 60
N HA G +GLF DE++ V+ A+E + + V P CPP
Sbjct: 210 NPHA----GENGLFGDEEIRIVTPAIEAMRAKG----MDVYGP----CPP 247
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 26.4 bits (58), Expect = 2.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 70 NFLSSFAFKIFECLVY 85
+FL+S AF++F+C Y
Sbjct: 258 DFLASLAFRVFQCTQY 273
>gnl|CDD|234210 TIGR03439, methyl_EasF, probable methyltransferase domain, EasF
family. This model represents an uncharacterized domain
of about 300 amino acids with homology to
S-adenosylmethionine-dependent methyltransferases.
Proteins with this domain are exclusively fungal. A few,
such as EasF from Neotyphodium lolii, are associated
with the biosynthesis of ergot alkaloids, a class of
fungal secondary metabolites. EasF may, in fact, be the
AdoMet:dimethylallyltryptophan N-methyltransferase, the
enzyme that follows tryptophan dimethylallyltransferase
(DMATS) in ergot alkaloid biosynthesis. Several other
members of this family, including mug158 (meiotically
up-regulated gene 158 protein) from Schizosaccharomyces
pombe, contain an additional uncharacterized domain
DUF323 (pfam03781).
Length = 319
Score = 26.1 bits (58), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 31 DVSLAVEGKIIQAHKVILSVCS 52
DVS+ +EG +I+ + I CS
Sbjct: 264 DVSIGLEGVVIRKGEKIRFECS 285
>gnl|CDD|214767 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus.
Length = 295
Score = 25.6 bits (57), Expect = 3.9
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 10/24 (41%)
Query: 41 IQAHKVIL----------SVCSPY 54
IQAH+V + VCSPY
Sbjct: 218 IQAHRVRVLEGKTIRLNPLVCSPY 241
>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase,
YffH/AdpP family. Members of this family include
proteins of about 200 amino acids, including the
recently characterized nudix hydrolase YffH, shows to be
highly active as a GDP-mannose pyrophosphatase. It also
includes the C-terminal half of a 361-amino acid
protein, TrgB from Rhodobacter sphaeroides, shown
experimentally to help confer tellurite resistance. This
model also hits a region near the C-terminus of a
1092-amino acid protein of C. elegans [Unknown function,
Enzymes of unknown specificity].
Length = 185
Score = 25.6 bits (56), Expect = 4.2
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLA--------VEGKIIQAHKVIL 48
E L N G G ++E++ + L EGKI VIL
Sbjct: 126 ELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVIL 179
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 25.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 7/27 (25%)
Query: 70 NFLSSFAFKIFECLVY-------FWTP 89
+FLS AF++F C Y F+TP
Sbjct: 264 DFLSGLAFRVFHCTQYVRHSADPFYTP 290
>gnl|CDD|106284 PRK13324, PRK13324, pantothenate kinase; Reviewed.
Length = 258
Score = 25.7 bits (56), Expect = 4.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 17 TTGFHGLFEDEDLVD 31
T GF GLF++ED+ +
Sbjct: 221 TGGFAGLFKEEDIFN 235
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 25.5 bits (56), Expect = 5.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 47 ILSVCSPYFIKC 58
LS C P+FI+C
Sbjct: 555 TLSSCQPFFIRC 566
>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function
unknown].
Length = 222
Score = 25.3 bits (56), Expect = 5.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILS 49
N T+GF L ED+V + + VE A K I+S
Sbjct: 164 NPTSGFLLLVPKEDIVPLDMTVE----DALKYIIS 194
>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid
hydroxylase. This family includes
phenylalanine-4-hydroxylase, the phenylketonuria disease
protein.
Length = 306
Score = 25.2 bits (55), Expect = 7.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 70 NFLSSFAFKIFECLVY 85
+FL+ AF++F C Y
Sbjct: 135 DFLAGLAFRVFHCTQY 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.452
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,601,124
Number of extensions: 358718
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 22
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)