RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5169
(94 letters)
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 57.9 bits (141), Expect = 2e-12
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
L GL+E+ D L V G+ QAHK IL+ SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 56.6 bits (137), Expect = 5e-12
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+ ++ A L E+ D L ++G+ I K IL+ SPY
Sbjct: 19 YFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 55.7 bits (135), Expect = 2e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
L GL+E+ D L V G+ QAHK IL+ SP F
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 54.6 bits (132), Expect = 3e-11
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
++ + + N+ + + + L DV++ VEG+ +AH+ +L+ CS YF
Sbjct: 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 53.8 bits (130), Expect = 6e-11
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
Y + N+ G + + + L DV+L VE K +AH+ +L+ CS YF
Sbjct: 5 SPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 53.4 bits (129), Expect = 6e-11
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
++ + + N+ + + + L DV++ VEG+ +AH+ +L+ CS YF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 55.3 bits (134), Expect = 7e-11
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
M E ++ A L E+ D L ++G+ I K IL+ SPY
Sbjct: 3 MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 53.0 bits (128), Expect = 1e-10
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+++ +++ + L + L DV + V + +AHK +L CS F
Sbjct: 5 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 51.0 bits (123), Expect = 4e-10
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 7 LKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+ + + +++ +G + L DV + VEG+ H+ +L+ CS YF
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 51.5 bits (124), Expect = 5e-10
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+ ++ NF ++ + DVS+ V+G +AH+ +L+ S YF
Sbjct: 6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYF 59
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 50.3 bits (121), Expect = 9e-10
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 6 SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
S+ + + + E D +L V G + +AH +L+ CS +F
Sbjct: 1 SMSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 50
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 50.3 bits (121), Expect = 1e-09
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 10 NNFHA-NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
++ H+ + + E D +L V G + +AH +L+ CS +F
Sbjct: 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 51
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 49.9 bits (120), Expect = 1e-09
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 23 LFEDEDLVDVSLAV----EGKIIQAHKVILSVCSPYF 55
+F +E + DV V + + AHK +L+V S F
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 49.9 bits (120), Expect = 1e-09
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 10 NNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
++ +L + E L D ++ + +AH+ +L+ S YF
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 49.5 bits (119), Expect = 2e-09
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
L+ + L + + L DV + V+ + AH+ +L+ S F
Sbjct: 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF 54
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 49.2 bits (118), Expect = 3e-09
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
+ S + +L + DV++ VE + +AHK ILS S YF
Sbjct: 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYF 57
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 49.2 bits (118), Expect = 3e-09
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 11 NFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
++ + + L D + V+G +AHK +L+ CS YF
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYF 53
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 50.7 bits (122), Expect = 3e-09
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSL---AVEGKIIQAHKVILSVCSPYF 55
E + ++ + L+ + D++L G+ +AH+ +L+ + YF
Sbjct: 5 MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 48.0 bits (115), Expect = 7e-09
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 29 LVDVSLAVEGKIIQAHKVILSVCSPYF 55
L D + V + AH ++L+ S
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQL 56
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 49.9 bits (119), Expect = 8e-09
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
L GL+E+ D L V G+ QAHK IL+ SP F
Sbjct: 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 200
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 27.0 bits (59), Expect = 0.95
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 NFLSSFAFKIFECLVYFWTPCTV 92
F S+ A + F+ P +
Sbjct: 179 QFFSNAAVTFGTAIAAFYLPVII 201
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 26.2 bits (57), Expect = 1.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 70 NFLSSFAFKIFECLVYFWTPCTV 92
+F FK+ ++ F+ P +
Sbjct: 164 DFYDVTWFKVMTAIINFYLPTLL 186
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural
genomics, PSI-2, shewanella one MR-1, protein structure
initiative; 2.30A {Shewanella oneidensis}
Length = 370
Score = 24.5 bits (54), Expect = 6.3
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 34 LAVEGKIIQAHKVILSVC--SPYFIKCPPKKLG 64
A GK +L+ PYF PK G
Sbjct: 215 WAASGKTDPQ---LLAQLLSHPYFSLAYPKSTG 244
>1kvz_A RC-rnase4; antitumor, BULLFROG, cytotoxicity,ribonuclease,
structure from molmol, hydrolase; NMR {Rana
catesbeiana} SCOP: d.5.1.1
Length = 107
Score = 24.0 bits (52), Expect = 6.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 64 GQSENTNFLSSFAFKIFECLVYFWTPC 90
G + + LS+ F + EC V PC
Sbjct: 51 GVIFSADVLSNSEFYLAECNVKPRKPC 77
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 24.6 bits (54), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 36 VEGKIIQAHKVILSVCSPY 54
VEG+ IQ H + VC +
Sbjct: 461 VEGQSIQLHPL---VCEAF 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.452
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,429,898
Number of extensions: 67139
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 32
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)