BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy517
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 63 SGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPM--FHCPYCPQKCHQKGNM 120
SG++ RT S + +EC C R+ S + MH L+ E + FHCP+C +K ++
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 121 VIHIKKKH 128
+H++K+H
Sbjct: 62 GVHLRKQH 69
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 66 NRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
++RT + + ++CP+CGK + + L H+R G++P + CP C + Q+ N+ H +
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQR 98
Query: 126 KKHPEK 131
EK
Sbjct: 99 THTGEK 104
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
+ CP+CGK + S LA H+R G++P + CP C + K ++ H + EK
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEK 76
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 43 SNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKE 102
+ KP+ S S+ ++RT + + ++CP+CGK + L H+R G++
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 103 PMFHCPYCPQKCHQKGNMVIH 123
P + CP C + ++ + +H
Sbjct: 161 P-YKCPECGKSFSRRDALNVH 180
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 43 SNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKE 102
+ KP+ S S+ + ++RT + + ++CP+CGK + L H+R G++
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 103 PMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
P + CP C + Q ++ H + EK
Sbjct: 105 P-YACPECGKSFSQLAHLRAHQRTHTGEK 132
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 24 SWKEDINIDDMSHFITSSPSNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWECPQCGK 83
S K+D+ +H + KP+ S S+ ++RT + + + CP+CGK
Sbjct: 60 SDKKDLTRHQRTH------TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 84 RYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
+ L H+R G++P + CP C + ++ N+ H + EK
Sbjct: 114 SFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEK 160
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 65 TNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKE 102
T++RT + + ++CP+CGK + L +H+R GK+
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 42 PSNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGK 101
P K F ++N+ ++RT + + ++CP+CGK + S L H+R G+
Sbjct: 8 PECGKSFSQSSNLQK---------HQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 102 EPMFHCPYC 110
+P + CP C
Sbjct: 59 KP-YKCPEC 66
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 43 SNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRL 97
+ KP+ S S+ ++RT + + ++CP+CGK + S L+ H+R
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 72 EDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
E R++C +CGK + +S L+ HRR G++P + C C + Q+ +++ H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
++C CGK +K S L+ H + P + C YC ++ HQK +M H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH 48
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 65 TNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHI 124
T+ S+ + C CGKR+ + H + G++P C C + Q N++ H
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH-KCQVCGKAFSQSSNLITHS 77
Query: 125 KK 126
+K
Sbjct: 78 RK 79
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
EC CGK ++ + L +H R G++P + C +C QK ++ H+++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK + S LA H+R+ G++P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKK 127
++ C +CG R K L H R P +HC YC KGN+ H+K K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 61 QGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNM 120
+G+G + S + CP CG+ + H RL + +F C YCP + +
Sbjct: 15 EGAGVLGLSASAECHL-CPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGL 72
Query: 121 VIHIKKKHPEK 131
HI K HP +
Sbjct: 73 TRHINKCHPSE 83
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC CGK + + + L++H+R+ GK+P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 91 LAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEKANP 134
L +H R+ C P F C YC Q N+ H+KK H + + P
Sbjct: 25 LRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK + L MH+R+ G++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK + L+MH+++ G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 71 SEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
S + ECP C K++ L +H R G++P F CP C + +K N++ H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH 54
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 68 RTRSEDARWECPQCGKRYKYSRGLAMHRRLECG--KEPMFHCPYCPQKCHQKGNMVIHI 124
R + + +ECP+CGK Y L H C E +F C C + ++ + +H+
Sbjct: 28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC QCGK + L H+ + GK+P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 73 DARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
D ++C +C ++Y LA H+ + G++P + C C + ++ N+ H + EK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + ++ L +H+R+ G+ P
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+ C +CGK + S L H+R+ G++P + C C + Q ++ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRRL 97
+R + + ++C +CGK + + GL H+R+
Sbjct: 34 QRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK + L+MH+R+ G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK + LA+H RL G P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C CGK + GL HRR+ G++P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 78 CPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
C CGK Y+ + GL+ HRR G P CP C + + + H+K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLK 53
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK +K L HRR G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 81 CGKRYKYSRGLAMHRRLECGKEPMFHCPY--CPQKCHQKGNMVIHI 124
CGKR+ L H R+ G P + CP+ C +K Q N+ HI
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHI 114
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK ++ L +H R+ G P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + +++ ++C +CGK + +S L+ H+ + G+ P
Sbjct: 1 GSSGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK + + LA H+R+ G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC +CGK + + L H+R+ G++P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK + + LA H+R+ G++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C C K ++Y L +H+R+ G++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK + + LA HRR+ G +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGKR+ + L H+R+ G++P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 66 NRRTRSEDARWECPQCGKRYKYSRGLAMHRRL 97
+R S++ ++C +CGK + SR LA+H+ L
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 73 DARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
+ R++C +CGK + + L+ H+++ G++P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGKR+ + L H+R+ G++P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 79 PQCGKRYKYSRGLAMHRRLECGKEPMFHCPY 109
P CGK + S L +H+R G++P F C +
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGEKP-FKCEF 125
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK ++++ L+ H+R+ G++P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +C K + S L +H+R+ G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+ C +CGK + + L +H+++ G+ P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGK 101
+ C +CGK + S L++HRR+ G+
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK ++ + LA H R+ G++P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+EC CGK + L +H+R+ G+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +C K + + L +H+R+ G+ P
Sbjct: 12 ECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK + + LA H+R+ G +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK Y L MH+++ G+ P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKE 102
+EC CGK ++ L H+R+ G++
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKHPEKANP 134
F C +C + KGN+V H + EK+ P
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+ C +CGK ++++ L H+R+ G++P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 78 CPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK ++ S L+ H+R+ G++P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGK 101
EC CGK + + L +H+R+ G+
Sbjct: 12 ECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C CGK + S L H+R+ G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
+ C QCGK + L +H R+ G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 73 DARWECPQCGKRYKYSRGLAMH 94
D + C CGKRYK GL+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEP 103
++C +CGK ++ LA+H+ G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,550,770
Number of Sequences: 62578
Number of extensions: 170814
Number of successful extensions: 533
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 150
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)