RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy517
(138 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.5 bits (103), Expect = 6e-07
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 77 ECPQCGKRYKYSRGLAMHRR---LECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEKAN 133
+C CG + L H+R F C +C ++ + ++ H K HP
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 134 PHDEA 138
E+
Sbjct: 68 APQES 72
Score = 25.8 bits (57), Expect = 1.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 76 WECPQCGKRYKYSRGLAMHRR 96
+ C CGKR++ +A HR
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRS 59
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 41.7 bits (99), Expect = 2e-06
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECG-KEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
EC C R+ S + MH + FHCP+C +K ++ +H++K+H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 27.1 bits (61), Expect = 0.64
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 91 LAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEKANPH 135
R G++P + C C + Q G M +HI +KH E
Sbjct: 3 SGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAKF 46
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.5 bits (94), Expect = 5e-06
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
++ C +CG R K L H R P +HC YC KGN+ H+K K K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 39.4 bits (93), Expect = 2e-05
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEKANPH 135
+C +C L +H R+ C P F C YC Q N+ H+KK H + + P
Sbjct: 11 KCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGK-EPMFHCPYCPQKCHQKGNMVIHIKKKHP 129
C C + Y + H + ++ CP+C ++ +K NM H+K H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.6 bits (86), Expect = 3e-04
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
+++ CP C + S L H R E CP C ++ + + H+ KKH
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.4 bits (75), Expect = 0.006
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 67 RRTRSEDARWECPQCGK-RYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
+R E CP C K GL H + + C +C ++ K + H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 126 KKHPEKANPHD 136
+H K + +
Sbjct: 76 AEHSAKPSDAE 86
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 31.7 bits (73), Expect = 0.011
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
C C + + L H R ++P + C C + ++ ++ H +K H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH 54
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.5 bits (73), Expect = 0.011
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 67 RRTRSEDARWECPQCGK-RYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
+ CP C K GL H C +E F C +C ++ M H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVM 83
Query: 126 KKHPEKANPHDEA 138
H +
Sbjct: 84 ANHNSLPSGPSSG 96
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.0 bits (74), Expect = 0.013
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+C CGK +K S L+ H + P + C YC ++ HQK +M H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH 48
Score = 29.7 bits (68), Expect = 0.093
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
C CGKR+ + H + G++P C C + Q N++ H
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH 76
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 32.5 bits (75), Expect = 0.014
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
ECP C K++ L +H R G++P F CP C + +K N++ H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH 54
Score = 31.3 bits (72), Expect = 0.037
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
C C + ++ L +H G+ P + C C Q+ QK ++ H+ K H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.2 bits (69), Expect = 0.100
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLEC---GKEPMFHCPYCPQKCHQKGNMVIH 123
ECP+CGK Y L H C ++ F C C + ++ + +H
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLH 85
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL---ECGKEPMFHCPYCPQKCHQKGNMVIH 123
C C K ++ + L MH + F C C + ++ M H
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 27.5 bits (62), Expect = 0.64
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 10/35 (28%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
C +CGK + +A H G
Sbjct: 49 VCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGP 83
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.027
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 66 NRRTRSEDARWECPQCGKRYKYSRGLAMHRRLE---CGKEPMFHCPYCPQKCHQKGNMVI 122
N++ + + +EC C + H E + C C + +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 123 HIKKKHPEKANP 134
H K HP + N
Sbjct: 69 HNLKYHPGEENF 80
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.3 bits (72), Expect = 0.032
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL---ECGKEPMFHCPYCPQKCHQKGNMVIHIKKKH 128
CP CG R+K ++ H R GK P + C C + + ++ HIK+ H
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGK-P-YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 29.8 bits (68), Expect = 0.098
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
C CGK ++ L H+ G++P + CP C + +K M H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH 54
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 31.3 bits (72), Expect = 0.057
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+CP+CGK + + L H+R G++P + CP C + Q+ N+ H
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAH 96
Score = 31.3 bits (72), Expect = 0.067
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+CP+CGK + L H+R G++P + CP C + Q ++ H
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH 124
Score = 30.9 bits (71), Expect = 0.072
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
CP+CGK + L H+R G++P + CP C + ++ N+ H
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152
Score = 30.9 bits (71), Expect = 0.081
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
CP+CGK + S LA H+R G++P + CP C + K ++ H
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH 68
Score = 29.3 bits (67), Expect = 0.25
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+CP+CGK + L H+R G++P + CP C + ++ + +H
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH 180
Score = 25.1 bits (56), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
+CP+CGK + L +H+R
Sbjct: 163 KCPECGKSFSRRDALNVHQR 182
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 29.7 bits (68), Expect = 0.072
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+C +C ++Y LA H+ + G++P + C C + ++ N+ H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH 64
Score = 24.0 bits (53), Expect = 8.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C CG ++ L H R+ G++P
Sbjct: 47 RCNICGAQFNRPANLKTHTRIHSGEKP 73
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 29.4 bits (67), Expect = 0.11
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
C +CGK + S L H+R+ G++P + C C + Q ++ H
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 26.3 bits (59), Expect = 1.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + GL H+R+
Sbjct: 44 KCLECGKAFSQNSGLINHQRIHTSGPS 70
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 30.2 bits (69), Expect = 0.17
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
+ C +C K+Y + ++LE P C C
Sbjct: 120 EEYYCVRCEKKYTVE---DVIKKLESSDVP--LCDDC 151
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 28.9 bits (66), Expect = 0.18
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+C C S L H R+ + P F C CP + +H
Sbjct: 38 KCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVH 83
Score = 28.2 bits (64), Expect = 0.34
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
+C CGK + L H R G +P + C C ++ H
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH 55
Score = 25.1 bits (56), Expect = 4.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
+C C + S L +H R
Sbjct: 66 KCQICPYASRNSSQLTVHLR 85
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.19
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CG + +S L H R +P
Sbjct: 14 QCKECGMNFSWSCSLFKHLRSHERTDP 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.20
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYS-RGLAMHRR-LECGKEPM---FHCPY 109
G N R A Q R +S R L R L P+ FH
Sbjct: 388 GLNLTLRKAKAPSGLDQS--RIPFSERKLKFSNRFL-----PVASPFHSHL 431
Score = 26.2 bits (57), Expect = 5.0
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 7/24 (29%)
Query: 61 QGS-----GTNRRTRSEDAR--WE 77
QGS G + S+ A+ W
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWN 1647
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.9 bits (66), Expect = 0.21
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
C CGK++K L H ++ C K
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Score = 27.8 bits (63), Expect = 0.65
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIH 123
C QCGK + + H + G P + C C +K K ++V H
Sbjct: 12 PC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGH 56
Score = 25.1 bits (56), Expect = 6.0
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 12/35 (34%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
EC C KR+ + HR + + +
Sbjct: 67 ECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQ 99
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.2 bits (64), Expect = 0.27
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
+C +CGK + +S L+ HRR ECGK
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.28
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 57 ASEFQGSGTNRRTRSEDARWECPQCGKR-----YKYSRG 90
E RR + + CP+C ++S G
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEG 41
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.1 bits (61), Expect = 0.32
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK ++++ L H+R+ G++P
Sbjct: 14 NCKECGKSFRWASCLLKHQRVHSGEKP 40
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (62), Expect = 0.32
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK +K L HRR G++P
Sbjct: 14 ECIECGKAFKTKSSLICHRRSHTGEKP 40
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 27.2 bits (61), Expect = 0.37
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C QCGK + LA+H+R P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 28.2 bits (64), Expect = 0.39
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
+C C + + S L H R G++P F C C +K + H K
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 27.8 bits (63), Expect = 0.50
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 10/35 (28%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
C CG+ + S L +H R C K
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHK 53
Score = 27.8 bits (63), Expect = 0.59
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL----------ECGK 101
C C K ++ L HR + ECGK
Sbjct: 47 TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK 81
Score = 27.4 bits (62), Expect = 0.85
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + SR LA+H+ L
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSS 101
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 26.8 bits (60), Expect = 0.53
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C QCGK + L +H R+ G P
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 26.4 bits (59), Expect = 0.56
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK ++ L +H R+ G P
Sbjct: 12 ECQECGKSFRQKGSLTLHERIHTGSGP 38
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.62
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + C CGK + + HRR+ G++P
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 27.5 bits (62), Expect = 0.66
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
+C C + + S L H R G++P F C C +K + H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH-RDIQHIL 57
Score = 24.4 bits (54), Expect = 8.1
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 9/34 (26%)
Query: 77 ECPQCGKRYKYSRGLAMHRRL---------ECGK 101
C CG+++ S HR + + +
Sbjct: 33 ACDICGRKFARSDERKRHRDIQHILPILEDKVEE 66
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.66
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC CGK + + + L++H+R+ GK+P
Sbjct: 14 ECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.74
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + ++ L +H+R+ G+ P
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIHTGENP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.75
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + ++C C K ++Y L +H+R+ G++P
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.4 bits (59), Expect = 0.77
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + Y L +H+R+ G++
Sbjct: 14 TCDECGKNFCYISALRIHQRVHMGEKC 40
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 28.0 bits (63), Expect = 0.81
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC-PQKCHQKG------- 118
+ C + + L H +E P + C ++C ++G
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 119 NMVIHI 124
+V HI
Sbjct: 77 KLVNHI 82
Score = 26.5 bits (59), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCH----QKGNMVIH 123
ECP+ GK +K L H R+ G++P F CP+ C + N+ IH
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFP--GCGKIFARSENLKIH 111
Score = 25.7 bits (57), Expect = 4.4
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 81 CGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEK 131
G + + + ++ + C + +V H+ +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGG 52
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich,
apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Length = 94
Score = 27.2 bits (60), Expect = 0.85
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 14 FFNHKHQVFSSWKEDINIDDMSHFITSSPSNAKPFHNNNNVDSASEFQGSGT 65
++ + S+W + +D + + N +++A EF GT
Sbjct: 4 GSENRSKTTSTWV--LRLDGEDLRVVLEKDTMDVWCNGQKMETAGEFVDDGT 53
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.2 bits (63), Expect = 0.98
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCH 115
A C CGK Y +L + P+ C C
Sbjct: 135 AHCHCIGCGKVYPPQ---VFKSKLA--EHPIKDFVKCD-VCG 170
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 26.7 bits (60), Expect = 0.99
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 77 ECPQ--CGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
CP+ CGK + + + L H +L + C +
Sbjct: 40 SCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFS 74
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + + C +CGK + + L H+R+ G++P
Sbjct: 1 GSSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 25.9 bits (58), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + S LA H+R+ G++P
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEKP 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + ++C +C K + S L +H+R+ G++P
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C CGK + S L H R+ +
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQETL 40
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 27.7 bits (62), Expect = 1.1
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
A C C + + + + + P CP C
Sbjct: 138 ASATCTVCQRPFPGE---DIRADVMADRVP--RCPVC 169
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC C K + LA H++ G++P
Sbjct: 14 ECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC C K + + L H+R+ G++P
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEKP 40
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + S + + C CGK + S L H+R+ G++P
Sbjct: 1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC QCGK + L H+ + GK+P
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 72 EDARWECPQCGKRYKYSRGLAMHRR 96
D + C CGKRYK GL+ H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYA 28
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.4
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + ++C +CGK + + H+RL G+ P
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.5 bits (57), Expect = 1.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +C K + L +H+R G+
Sbjct: 14 ECNECQKAFNTKSNLMVHQRTHTGESG 40
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + + L H RL G++P
Sbjct: 14 NCKECGKSFSRAPCLLKHERLHSGEKP 40
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 26.7 bits (60), Expect = 1.5
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
+ C +R+ S L H+R G +P F C C +K + ++ H +
Sbjct: 40 DFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTR 87
Score = 24.8 bits (55), Expect = 7.8
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 77 ECPQCGKRYKYSRGLAMHRR------------LECGK 101
+C C +++ S L H R C K
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK 104
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + S + ++C +CGK + + H+R G++P
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 25.5 bits (57), Expect = 1.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + + L H+R+ G++P
Sbjct: 14 ECKECGKAFSQTTHLIQHQRVHTGEKP 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + W+C +C + + L +H+ + G++P
Sbjct: 1 GSSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 25.5 bits (57), Expect = 1.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C CG R+++ + L H R+ G P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGP 39
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK ++ LA+H+ G++P
Sbjct: 14 KCNECGKAFRARSSLAIHQATHSGEKP 40
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 27.7 bits (61), Expect = 1.5
Identities = 9/42 (21%), Positives = 10/42 (23%), Gaps = 6/42 (14%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCH 115
A C CGK Y +L C C
Sbjct: 143 AHCHCIGCGKVYPPQ---VFKSKLAEHPIK--DFVKCD-VCG 178
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + S +EC +C K + L H+R+ G+
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS 40
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK + GL HRR+ G++P
Sbjct: 14 DCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK Y L MH+++ G+ P
Sbjct: 14 KCEKCGKGYNSKFNLDMHQKVHTGERP 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 25.2 bits (56), Expect = 1.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + + L +H R G
Sbjct: 14 ECNECGKAFIWKSLLIVHERTHAGVSG 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + LA HRR+ G +P
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTGGKP 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + LA H+R+ G++P
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKP 40
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 26.9 bits (59), Expect = 1.7
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 8/47 (17%)
Query: 72 EDARWECPQCGKRYKYSRGLAMHRRLECGK--------EPMFHCPYC 110
E+A ++C C +K CP C
Sbjct: 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKC 113
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK ++ S L H + G+ P
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERP 40
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC CGK + L +H+++ G++P
Sbjct: 14 ECSICGKSFTKKSQLHVHQQIHTGEKP 40
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + S L H+R+ G++P
Sbjct: 14 KCNECGKSFIQSAHLIQHQRIHTGEKP 40
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC CGK ++ L H+R+ G++
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEKS 40
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.9
Identities = 10/40 (25%), Positives = 27/40 (67%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + ++C +CGK ++++ L+ H+R+ G++P
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.0 bits (58), Expect = 1.9
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRR 96
R + ++C +C + + S LA+H +
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 26.0 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPY 109
+ CGK Y S L H R G++P +HC +
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDW 40
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + L H+R G++P
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKP 40
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 1.9
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + + C +CGK + + L +H+++ G+ P
Sbjct: 1 GSSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 25.2 bits (56), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C QC K + L +H+R G +P
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + ++C +CGK + + LA H+R+ G++P
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK + + L +H++ G+
Sbjct: 14 KCSDCGKSFTWKSRLRIHQKCHTGERH 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + S + + C +CGK + L+ H+R G++P
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + L MH+R +
Sbjct: 14 KCTECGKAFCWKSQLIMHQRTHVDDKH 40
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 26.0 bits (58), Expect = 2.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 79 PQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
C R+ S L H R G +P F C C + + ++ +H+K
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96
Score = 24.9 bits (55), Expect = 6.8
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRR 96
R + ++C C + + S LA+H +
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 2.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + L HR + G++P
Sbjct: 14 KCNECGKVFTQNSHLVRHRGIHTGEKP 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + L H++ G+
Sbjct: 14 ECCECGKVFSRKDQLVSHQKTHSGQSG 40
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK + GL +H++ G+
Sbjct: 14 KCSDCGKAFTRKSGLHIHQQSHTGERH 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + +EC +CGK + L+MH+R+ G++P
Sbjct: 1 GSSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK Y L MH+R+ G++
Sbjct: 14 KCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 2.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK ++ L +H R G+
Sbjct: 14 VCNECGKAFRSKSYLIIHTRTHTGESG 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 2.4
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 6 QRRQIVSQFFNHKHQ-----VFSSWKEDINIDDMSHFITSSPSNAKPFHNNNNVDSASEF 60
++ ++V +F + + S K + M + + +N+N V F
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQV-----F 126
Query: 61 QGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGK 101
+R R Q + ++ + + L GK
Sbjct: 127 AKYNVSRLQPYLKLR----QALLELRPAKNVLIDGVLGSGK 163
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L H+++ ++P
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKP 40
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C CGK + L H+++ G++P
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CG+ + L H+R+ G++P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L H+ + G++P
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKP 40
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + L +H +L G++P
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEKP 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK YK L H+R+ G++
Sbjct: 14 KCVECGKGYKRRLDLDFHQRVHTGEKL 40
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC CGK + L +H+R+ G+ P
Sbjct: 14 ECSDCGKSFIKKSQLHVHQRIHTGENP 40
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.8 bits (55), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + L H+R G+
Sbjct: 12 ECSECGKAFNRKDQLISHQRTHAGESG 38
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK + S L H+R+ G++P
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + LA H+R+ G +P
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVKP 40
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 26.9 bits (60), Expect = 2.8
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 106 HCPYCPQKC----HQKGNMVIHIK--KKHP 129
C C +C H GN V ++ + +P
Sbjct: 43 ICEGCFWRCGIVAHAVGNRVYKVEGYEANP 72
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + S L H ++P
Sbjct: 14 QCSECGKSFSGSYRLTQHWITHTREKP 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + LA HR + G++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK ++ + LA H R+ G++P
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEKP 40
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + L H R+ G++P
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKP 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGKR+ + L H+R+ G++P
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEKP 40
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + L+MH+++ G++P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 26.7 bits (58), Expect = 3.0
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 68 RTRSEDARWECPQCGKRYKYSRGLAMHRR 96
T S ++C C L H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMH-RRLECGKEPMFHCPYC 110
G++ + S + C CGK + L H +++ + P C
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGKR+ + L H+R+ G++P
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEKP 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + LA HR + G++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP 40
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 3.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + R L H + G++P
Sbjct: 14 KCEECGKGFICRRDLYTHHMVHTGEKP 40
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
acetyl transferase, transferase; HET: ACO U5P UDP PE4;
1.43A {Bordetella petrii} PDB: 3mqh_A*
Length = 192
Score = 26.5 bits (58), Expect = 3.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 71 SEDARWECPQCGKRYKYSRGL 91
+A CP G+RY + G+
Sbjct: 168 RGNAEATCPHTGERYILTDGV 188
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +CGK + L MH+R+ G++P
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTGEKP 40
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 26.4 bits (59), Expect = 3.3
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
+ +C C + Y +S G+ P C C
Sbjct: 123 KLDCLDCHETYDWS---EFVEDFNKGEIP--RCRKC 153
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L +H R G++P
Sbjct: 14 GCSECGKAFSSKSYLIIHMRTHSGEKP 40
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK ++ + LA H+ + G++P
Sbjct: 14 KCHECGKVFRRNSHLARHQLIHTGEKP 40
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.3 bits (52), Expect = 3.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 WECPQCGKRYKYSRGLAMH 94
+ CP C KR+ S L+ H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + LA H RL ++
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLHSREKS 40
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHC 107
C +CGK + L H + ++
Sbjct: 14 GCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 25.6 bits (57), Expect = 3.8
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 77 ECPQCGKRYKYSRGLAMHRR------------LECGK 101
C +CGK + S L H+ CGK
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK ++ L H+ + G++P
Sbjct: 14 KCNECGKAFRAHSNLTTHQVIHTGEKP 40
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 25.8 bits (57), Expect = 3.9
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 78 CPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
C QCG R E P + CP C
Sbjct: 6 CSQCGGEVI-------LRIPEGDTLPRYICPKC 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 25.5 bits (55), Expect = 4.1
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 5/69 (7%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEP-----MFHCPYCPQKCHQKGNMVIHIKKKHP 129
R + + R L + + C YC ++ +H+ K
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Query: 130 EKANPHDEA 138
+ +
Sbjct: 106 YQKVSGPSS 114
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 4.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C QC K + L +H+R+ ++P
Sbjct: 14 KCSQCEKSFSGKLRLLVHQRMHTREKP 40
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 25.0 bits (55), Expect = 4.6
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
C +R+ S L H R+ G++P F C C + + ++ HI+
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 70
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK Y L H+R+ G++P
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEKP 40
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 23.8 bits (52), Expect = 4.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 68 RTRSEDARWECPQCGKRYKYSRGLAMHRR 96
R + ++CP C + + S LA+HR+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L H+R+ G++P
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTGEKP 40
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 24.9 bits (55), Expect = 5.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPY 109
CGK +K L +H+ + P + CP+
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLP-YECPH 36
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 24.7 bits (54), Expect = 5.1
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 62 GSGTNRRTRSEDARWEC--PQCGKRYKYSRGLAMHRRLECGKEPMFHCPY 109
GS + S C P CGK Y S L H R G++P F C +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSW 52
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L H+++ G++P
Sbjct: 14 RCAECGKAFTDRSNLFTHQKIHTGEKP 40
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 24.1 bits (53), Expect = 5.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
EC +CGK + + L H R
Sbjct: 14 ECIECGKAFIQNTSLIRHWR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 24.0 bits (53), Expect = 5.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + + L+ H+++ G++P
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEKP 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CGK + L H + ++P
Sbjct: 14 KCDICGKSFCGRSRLNRHSMVHTAEKP 40
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
EC +C K + L +H+R G++P
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEKP 40
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C +CGK + L HRR+ G P
Sbjct: 14 KCSECGKAFHRHTHLNEHRRIHTGYRP 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 24.6 bits (53), Expect = 5.6
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 65 TNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
R T S C +C K L E GK+
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKT 67
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.5 bits (55), Expect = 6.0
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKE 102
R + R + + + L L ++
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 25.5 bits (55), Expect = 7.4
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIKKKHPEKA 132
W KR +HR L G++ Q ++ I +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKR-LQREKSEQVLDNPEDLRGPIHLSVLRQG 236
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 25.5 bits (56), Expect = 6.2
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
C R++Y M ++ P C C
Sbjct: 158 YTSHCVSASCRHEYP-LSWMKEKIFSEVTP--KCEDC 191
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 23.7 bits (51), Expect = 6.2
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + C CGK ++ L H+ G++P
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 6.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKHPEK 131
+ CP C K N+ +H++K EK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.7 bits (50), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGK 101
EC +CGK +++S L H+ L G+
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.8 bits (52), Expect = 6.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +C + + + L H+++ K
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSG 38
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
C +CGK + L HRR+ G++P
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.6 bits (52), Expect = 7.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEP 103
+C CG R+ L H + G P
Sbjct: 13 KCETCGARFVQVAHLRAHVLIHTGSGP 39
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 23.3 bits (49), Expect = 7.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKH 128
+ C YC + N+ HIK KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 23.7 bits (51), Expect = 7.5
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 64 GTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEP 103
G++ + + + ++C +C + + L H R K
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 23.6 bits (50), Expect = 8.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLEC 99
AR+ C CG + L H+ C
Sbjct: 7 ARFMCLPCGIAFSSPSTLEAHQAYYC 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi}
PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A
3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A
1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Length = 52
Score = 23.7 bits (52), Expect = 8.4
Identities = 6/14 (42%), Positives = 7/14 (50%), Gaps = 2/14 (14%)
Query: 74 ARWECPQCGKRYKY 87
A+ C CG Y Y
Sbjct: 1 AKLSCKICG--YIY 12
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 25.3 bits (56), Expect = 8.5
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYCP 111
C C K K ++ + + P P CP
Sbjct: 153 FEAVCCTCNKIVKLNKIMLQKTSHFMHQLP----PECP 186
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 22.9 bits (49), Expect = 9.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 75 RWECPQCGKRYKYSRGLAMHRR 96
++ CP+C KR+ S L +H
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.0 bits (49), Expect = 10.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 75 RWECPQCGKRYKYSRGLAMHRR 96
++ CP+C KR+ S L+ H
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.425
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,109,732
Number of extensions: 106670
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 273
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)