RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy517
(138 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 27.7 bits (61), Expect = 0.092
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 80 QCGKRYKYSRGLAMHRRLECGKEPMFHCPYCPQKCHQKGNMVIHIK 125
QCGK + + H + C C +K K ++V H+K
Sbjct: 7 QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 23.9 bits (51), Expect = 2.9
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 67 RRTRSEDARWECPQCGKRYKYSRGLAMHRR 96
+ C CGK++K L H +
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.17
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 77 ECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPY 109
P CGK + + + L H +L + C +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 28.2 bits (62), Expect = 0.33
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 2 MAEYQRRQIVSQFFNHKHQVFSSWKEDINIDDMSHFITSSPSNAKPFHN-NNNVDSASEF 60
+A V +F++++ +V S + + ++ T + N+D
Sbjct: 54 LAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRK 113
Query: 61 QGSGTNRRTRSEDARWECPQCGKRYKY 87
G+ + C CG +
Sbjct: 114 AGTKNLLEIHGSLFKTRCTSCGVVAEN 140
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 0.36
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
+C C + + S L H R
Sbjct: 5 QCRICMRNFSRSDHLTTHIR 24
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 25.7 bits (57), Expect = 0.39
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
C C + + L H R
Sbjct: 4 VCEVCTRAFARQEHLKRHYR 23
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.7 bits (57), Expect = 0.39
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
C +CGK + S L H+R
Sbjct: 9 GCVECGKAFSRSSILVQHQR 28
>d3b2ua1 c.10.2.5 (A:312-480) EGF receptor extracellular domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 27.6 bits (61), Expect = 0.39
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 48 FHNNNN------VDSASEFQGSGTNRRTRSEDARWECPQCGK 83
N N ++ F SG + S C G+
Sbjct: 128 ISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQ 169
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.9 bits (55), Expect = 0.57
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
+C +CGK + + GL H+R
Sbjct: 4 KCLECGKAFSQNSGLINHQR 23
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.1 bits (54), Expect = 0.66
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKH 128
+ C YC + N+ HIK KH
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (54), Expect = 0.79
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 76 WECPQCGKRYKYSRGLAMHRR 96
+ CP+C KR+ S L+ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 24.6 bits (54), Expect = 0.89
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 77 ECPQCGKRYKYSRGLAMHRR 96
C CGK + L H +
Sbjct: 7 ICQSCGKGFSRPDHLNGHIK 26
Score = 23.0 bits (50), Expect = 3.8
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKH 128
+ C C + + ++ HIK+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 1.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKHPEK 131
+ C C + Q G M +HI +KH E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 23.4 bits (51), Expect = 2.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 68 RTRSEDARWECPQCGKRYKYSRGLAMHRR 96
RT S + +EC C R+ S + MH
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHIL 29
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 24.2 bits (52), Expect = 1.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 104 MFHCPYCPQKCHQKGNMVIHIKKKH 128
++ CP+C ++ +K NM H+K H
Sbjct: 1 VYPCPFCFKEFTRKDNMTAHVKIIH 25
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Length = 70
Score = 25.1 bits (55), Expect = 1.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 72 EDARWECPQCGKRYKYSRGLAMHRRLECGKEPM-----FHCPYC 110
++ ++EC CG Y+ +G + G + F CP C
Sbjct: 4 DEGKYECEACGYIYEPEKGDK-FAGIPPGTPFVDLSDSFMCPAC 46
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
(Pichia pastoris) [TaxId: 4922]}
Length = 460
Score = 26.5 bits (58), Expect = 1.4
Identities = 5/69 (7%), Positives = 17/69 (24%)
Query: 19 HQVFSSWKEDINIDDMSHFITSSPSNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWEC 78
H ++K D+++ + + + + +
Sbjct: 213 HDHVLNYKVDLDVGGTKNRASQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGINW 272
Query: 79 PQCGKRYKY 87
P+ G+
Sbjct: 273 PENGQGILL 281
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.2 bits (53), Expect = 1.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 68 RTRSEDARWECPQCGKRYKYSRGLAMHRR 96
RT + + + C C K ++ + L MH +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFK 29
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 53
Score = 23.9 bits (52), Expect = 2.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 74 ARWECPQCGKRYKYSRG 90
A+W C CG Y G
Sbjct: 1 AKWVCKICGYIYDEDAG 17
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 23.6 bits (51), Expect = 2.5
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 76 WECPQCGKRYKYSRGLAMHRR 96
+ C C + A H +
Sbjct: 8 FVCRICLSAFTTKANCARHLK 28
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 3.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKH 128
FHCP+C +K ++ +H++K+H
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQH 26
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 44
Score = 23.1 bits (50), Expect = 3.6
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 13/41 (31%)
Query: 70 RSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
R + +W C CG ++ G CP C
Sbjct: 3 REQATKWRCRNCGYVHE-------------GTGAPELCPAC 30
>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17
[TaxId: 1409]}
Length = 386
Score = 25.0 bits (54), Expect = 4.2
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 25/71 (35%)
Query: 4 EYQRRQIVSQFFNHKHQVFSSWKEDINIDDMSHFITSSPSNAKPFH----------NNNN 53
+ V ++++ WK+ ++ + S+ + +
Sbjct: 24 QESLNASVRSYYDN-------WKK--------KYLKNDLSSLPGGYYVKGEITGDADGFK 68
Query: 54 VDSASEFQGSG 64
SE QG G
Sbjct: 69 PLGTSEGQGYG 79
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 23.2 bits (50), Expect = 4.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 65 TNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
T+ R + A ++CP C + L ++ + F C +C
Sbjct: 4 TDERDSTNRASFKCPVCSSTFT---DLEANQLFDPMTG-TFRCTFC 45
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 22.7 bits (48), Expect = 5.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 74 ARWECPQCGKRYKYSRGLAMHRRLEC 99
AR+ C CG + L H+ C
Sbjct: 7 ARFMCLPCGIAFSSPSTLEAHQAYYC 32
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans
[TaxId: 301]}
Length = 56
Score = 22.8 bits (49), Expect = 6.0
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 75 RWECPQCGKRYKYSRGLAMHRRLECGKEPM-----FHCPYC 110
+W C CG Y + G G + CP C
Sbjct: 4 KWICITCGHIYDEALGDE-AEGFTPGTRFEDIPDDWCCPDC 43
>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 23.7 bits (51), Expect = 6.1
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 107 CPYCPQKCHQKGNMVIHIKKKH 128
P CP++C + G + +
Sbjct: 4 APTCPKQCRRTGTLQSNFCASS 25
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 24.4 bits (52), Expect = 6.6
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 53 NVDSASEFQGSGTNRRTRSEDARWECPQCGKRYKYSRGLAMHRRLECGK 101
N+D+ E G+ E + C Q G+ ++ + + C +
Sbjct: 91 NIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQ 139
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 22.4 bits (48), Expect = 6.9
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 12/33 (36%)
Query: 78 CPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
CPQC Y Y G + CP C
Sbjct: 6 CPQCNSEYTYEDG------------ALLVCPEC 26
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.3 bits (47), Expect = 6.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 105 FHCPYCPQKCHQKGNMVIHIKKKH 128
F C YC Q N+ H+KK H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea
seedling (Pisum sativum) [TaxId: 3888]}
Length = 441
Score = 24.2 bits (52), Expect = 7.2
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 19 HQVFSSWKEDINIDDMSHFITSSPSNAKPFHNNNNVDSASEFQGSGTNRRTRSEDARWEC 78
H F + D +ID + + + ++ + + + T DA+
Sbjct: 236 HDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKS--YWTTETQTAKTESDAKITI 293
Query: 79 PQCGKRYKY 87
Sbjct: 294 GLAPAELVV 302
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 21.9 bits (46), Expect = 8.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLEC 99
+ECP+CGK Y L H C
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNC 25
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 23.3 bits (50), Expect = 8.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 73 DARWECPQCGKRYKYSRG 90
+ CPQC RYK RG
Sbjct: 56 EGTQNCPQCKTRYKRLRG 73
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 22.5 bits (48), Expect = 9.9
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 76 WECPQCGKRYKYSRGLAMHRRLECGKEPMFHCPYC 110
ECP+C R RR + F C C
Sbjct: 24 RECPKCHSRENVFFQSQQ-RRKDTSMVLFFVCLSC 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.425
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,957
Number of extensions: 23111
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 93
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.3 bits)