BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5171
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G6B|A Chain A, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima Asn217ile Mutant
pdb|3G6B|B Chain B, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima Asn217ile Mutant
Length = 213
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 79 EQTKSTMEQTKSFMEQTKNSMEQT---KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSME 135
E TK +E+ + +E ++ S+E + E +++ RFME +++ +NS++
Sbjct: 130 EVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENIVKLLQEVRNSLD 189
Query: 136 QTKNSM 141
+K S+
Sbjct: 190 TSKESL 195
>pdb|3G67|A Chain A, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima
pdb|3G67|B Chain B, Crystal Structure Of A Soluble Chemoreceptor From
Thermotoga Maritima
Length = 213
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 79 EQTKSTMEQTKSFMEQTKNSMEQT---KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSME 135
E TK +E+ + +E ++ S+E + E +++ RFME +++ +NS++
Sbjct: 130 EVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLD 189
Query: 136 QTKNSM 141
+K S+
Sbjct: 190 TSKESL 195
>pdb|1HMC|A Chain A, Three-Dimensional Structure Of Dimeric Human Recombinant
Macrophage Colony Stimulating Factor
pdb|1HMC|B Chain B, Three-Dimensional Structure Of Dimeric Human Recombinant
Macrophage Colony Stimulating Factor
Length = 148
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTME--QTKSFMEQTKNSMEQTKSSMEQ 108
EQ K+ + K + + ME T RF + T + + Q + + K+ TK E
Sbjct: 38 EQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCF--TKDYEEH 95
Query: 109 TKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
K+ + + F E +E+ KN +TKN ++
Sbjct: 96 DKACV---RTFYETPLQLLEKVKNVFNETKNLLD 126
>pdb|3UEZ|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UF2|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|I Chain I, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|3UF2|J Chain J, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine
pdb|4ADF|G Chain G, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|H Chain H, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|I Chain I, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|J Chain J, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|K Chain K, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|L Chain L, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|S Chain S, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|T Chain T, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|U Chain U, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|V Chain V, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|W Chain W, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|X Chain X, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 153
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTME--QTKSFMEQTKNSMEQTKSSMEQ 108
EQ K+ + K + + ME T RF + T + + Q + + K+ TK E
Sbjct: 45 EQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCF--TKDYEEH 102
Query: 109 TKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
K+ + + F E +E+ KN +TKN ++
Sbjct: 103 DKACV---RTFYETPLQLLEKVKNVFNETKNLLD 133
>pdb|4FA8|E Chain E, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|F Chain F, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|G Chain G, Multi-Pronged Modulation Of Cytokine Signaling
Length = 147
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTME--QTKSFMEQTKNSMEQTKSSMEQ 108
EQ K+ + K + + ME T RF + T + + Q + + K+ TK E
Sbjct: 40 EQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLKSCF--TKDYEEH 97
Query: 109 TKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
K+ + + F E +E+ KN +TKN ++
Sbjct: 98 DKACV---RTFYETPLQLLEKVKNVFNETKNLLD 128
>pdb|3EJJ|A Chain A, Structure Of M-Csf Bound To The First Three Domains Of Fms
pdb|3EJJ|B Chain B, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 155
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNS-----MEQ---------TKSSMEQNK 68
EQ + + K + ++ +++T F + T N+ +++ TK EQNK
Sbjct: 41 EQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERLQELSNNLNSCFTKDYEEQNK 100
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSME 100
+ + + F E +E+ K+F +TKN +E
Sbjct: 101 ACV---RTFHETPLQLLEKIKNFFNETKNLLE 129
>pdb|3UF5|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine
pdb|3UF5|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine
pdb|4ADQ|E Chain E, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|F Chain F, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|G Chain G, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|H Chain H, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 153
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNS-----MEQ---------TKSSMEQNK 68
EQ + + K + ++ +++T F + T N+ +++ TK EQNK
Sbjct: 45 EQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERLQELSNNLNSCFTKDYEEQNK 104
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSME 100
+ + + F E +E+ K+F +TKN +E
Sbjct: 105 ACV---RTFHETPLQLLEKIKNFFNETKNLLE 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.292 0.0996 0.230
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,734,544
Number of Sequences: 62578
Number of extensions: 65329
Number of successful extensions: 607
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 159
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 48 (23.1 bits)