Query psy5171
Match_columns 180
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 19:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx6_A HAMP, methyl-accepting 96.9 0.16 5.4E-06 43.0 19.4 37 120-156 243-279 (341)
2 2ch7_A Methyl-accepting chemot 96.1 0.41 1.4E-05 38.4 18.3 39 119-157 248-286 (309)
3 1qu7_A Methyl-accepting chemot 92.9 3.2 0.00011 33.6 17.9 52 107-158 150-201 (227)
4 1qu7_A Methyl-accepting chemot 86.5 11 0.00039 30.3 18.5 20 7-26 8-27 (227)
5 2lgx_A Fermitin family homolog 5.5 1.2E+02 0.004 23.4 -0.3 24 156-180 80-103 (112)
6 1g2c_B Fusion protein (F); mem 5.5 5.7E+02 0.02 16.6 3.1 27 129-155 11-37 (43)
7 2kmc_A Fermitin family homolog 4.8 1.2E+02 0.004 23.0 -0.7 25 155-180 76-100 (102)
8 3kpe_B Fusion glycoprotein F0; 4.0 8.5E+02 0.029 15.5 3.0 29 128-156 5-33 (39)
9 3c98_B Syntaxin-1A; protein co 3.7 1.3E+03 0.045 17.1 7.2 77 43-119 42-118 (279)
10 3gwk_C SAG1039, putative uncha 3.4 1E+03 0.035 15.3 8.3 68 25-92 9-92 (98)
No 1
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.16 Score=42.98 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=13.3
Q ss_pred HHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHH
Q psy5171 120 MEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156 (180)
Q Consensus 120 l~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~ 156 (180)
+.++....++......+....+.+.....+++...++
T Consensus 243 ~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 279 (341)
T 3zx6_A 243 MGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVE 279 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 2
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=96.10 E-value=0.41 Score=38.36 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=14.1
Q ss_pred HHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHh
Q psy5171 119 FMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQ 157 (180)
Q Consensus 119 sl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Q 157 (180)
...++.....+.....++.....++.....++.....++
T Consensus 248 ~~~~i~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 286 (309)
T 2ch7_A 248 AVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEE 286 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 3
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=92.86 E-value=3.2 Score=33.61 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=19.9
Q ss_pred HhhhhhHHHhHHHHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHhh
Q psy5171 107 EQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQT 158 (180)
Q Consensus 107 ~Q~asSl~Q~assl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Qt 158 (180)
+.+..........+.++....++.....++....+.......+++....++.
T Consensus 150 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 201 (227)
T 1qu7_A 150 AEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQS 201 (227)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 4
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=86.51 E-value=11 Score=30.32 Aligned_cols=20 Identities=45% Similarity=0.518 Sum_probs=8.0
Q ss_pred HHHhhhhhHhhhhHHHhhhh
Q psy5171 7 SMEQTKSSMEQTKSFMEQTE 26 (180)
Q Consensus 7 s~~Q~~sSl~Q~~ssl~Qt~ 26 (180)
.++++...+++.........
T Consensus 8 ~~~~~~~~~~e~~~~~~~i~ 27 (227)
T 1qu7_A 8 SLEQTAASMEQLTATVKQNA 27 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 5
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=5.51 E-value=1.2e+02 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=17.5
Q ss_pred HhhhhhhhHhHhhhcccccccccCC
Q psy5171 156 EQTKSSMEQTKLQAKGSKLNYTSCH 180 (180)
Q Consensus 156 ~Qt~sSl~Q~~l~~~~s~l~y~~~~ 180 (180)
..+..+|++..+++|+ .|+|+.-|
T Consensus 80 lkt~~tLDk~giqADa-~L~ftp~h 103 (112)
T 2lgx_A 80 LKTHWTLDKYGIQADA-KLQFTPQH 103 (112)
T ss_dssp CCTTSCHHHHTCCTTC-BBCBBC--
T ss_pred hcchhhHhhhceeccc-cceecCCC
Confidence 4567789999999987 58887654
No 6
>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=5.49 E-value=5.7e+02 Score=16.58 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=12.6
Q ss_pred hhhhhHHhhhhhhhhhhHHHhhhhhHH
Q psy5171 129 QTKNSMEQTKNSMEQTKSFMEQTKSSM 155 (180)
Q Consensus 129 Q~asSl~Qt~sSl~q~~ssl~Qt~ssl 155 (180)
|+.-+++|..+|.+++-..++++...|
T Consensus 11 qFdvai~qV~esI~qS~~~i~~Sd~lL 37 (43)
T 1g2c_B 11 EFDASISQVNEKINQSLAFIRKSDELL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444333
No 7
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=4.83 E-value=1.2e+02 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHhhhhhhhHhHhhhcccccccccCC
Q psy5171 155 MEQTKSSMEQTKLQAKGSKLNYTSCH 180 (180)
Q Consensus 155 l~Qt~sSl~Q~~l~~~~s~l~y~~~~ 180 (180)
|..+..+|++..+++|+ .|+|+.-|
T Consensus 76 Llkt~~tLDkygiqADa-~L~ftp~h 100 (102)
T 2kmc_A 76 LLKTHWTLDKCGVQADA-NLLFTPQH 100 (102)
T ss_dssp ECCTTSBHHHHTCCTTS-CEEEEECC
T ss_pred hhhhhhhhhhhceeeee-eeeccCCC
No 8
>3kpe_B Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus}
Probab=3.96 E-value=8.5e+02 Score=15.48 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhhhHHHhhhhhHHH
Q psy5171 128 EQTKNSMEQTKNSMEQTKSFMEQTKSSME 156 (180)
Q Consensus 128 ~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~ 156 (180)
+|+.-+++|..++..++....+++...|.
T Consensus 5 DqFdvai~qV~e~InqS~~~i~~Sd~lL~ 33 (39)
T 3kpe_B 5 DEFDASISQVNEKINQSLAFIRKSDELLH 33 (39)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=3.70 E-value=1.3e+03 Score=17.08 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHhhhhHHHHhHhHHHhhhhHHHhhhhhhhhhhhhhhhhhhHHHhhhHHHHHhHHhHhhhhhhHHhhhhhHHHhHHH
Q psy5171 43 MEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRF 119 (180)
Q Consensus 43 l~Qs~sSl~Q~~sSl~Q~~sSl~Q~~sSldQ~~sSl~Q~asSl~Q~~ssl~Q~asSl~Qt~sSl~Q~asSl~Q~ass 119 (180)
+.+.-.-.+.+...+..+...+..+......+.............+......+......+...+..+.....+....
T Consensus 42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i 118 (279)
T 3c98_B 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 118 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 10
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=3.37 E-value=1e+03 Score=15.28 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHhhhhHHHhhhhHHHHh----------------HhHHHhhhhHHHhhhhhhhhhhhhhhhhhhHHHhh
Q psy5171 25 TESSMEQTKSSMEQTKNSMEQTKSFMEQT----------------KNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQT 88 (180)
Q Consensus 25 t~sSl~Q~asSl~Q~~sSl~Qs~sSl~Q~----------------~sSl~Q~~sSl~Q~~sSldQ~~sSl~Q~asSl~Q~ 88 (180)
+.+-|++.+..+.....-++..-..|... ..-..+....+.+....|+.|+..|+.++...+..
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~ 88 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQT 88 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHH
Q psy5171 89 KSFM 92 (180)
Q Consensus 89 ~ssl 92 (180)
...+
T Consensus 89 D~~~ 92 (98)
T 3gwk_C 89 DADI 92 (98)
T ss_dssp HHHH
T ss_pred HHHH
Done!