RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5171
(180 letters)
>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms].
Length = 408
Score = 42.7 bits (100), Expect = 3e-05
Identities = 19/123 (15%), Positives = 60/123 (48%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
E++ +S ++ +E+ +N ME++ S + + + +E+T S++ + + +E+
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
+ + ++ E+ + +E+ +E+ ++ ++E+ + E+ K E+ +
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404
Query: 157 QTK 159
+ K
Sbjct: 405 KFK 407
Score = 39.6 bits (92), Expect = 4e-04
Identities = 17/123 (13%), Positives = 61/123 (49%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E++ S ++ +E+ ++ ME++ + + + +E+T +S+ + +++E+
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
+ + E+ + +E+ + +E+ + ++ +++E+ ++ E+ K E+ +
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404
Query: 129 QTK 131
+ K
Sbjct: 405 KFK 407
Score = 38.4 bits (89), Expect = 0.001
Identities = 19/114 (16%), Positives = 57/114 (50%)
Query: 58 EQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTK 117
E++ S ++ +E+ + ME++ S + + +E+T SS+ + +++E+
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344
Query: 118 RFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKG 171
+ + + + E+ +E+ S+E+ ++ +++E+ ++ E+ K A+
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEK 398
Score = 36.5 bits (84), Expect = 0.004
Identities = 11/122 (9%), Positives = 48/122 (39%)
Query: 8 MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
+ + ++ + E + E+ +S + +Q +E+ +++E+ ++++
Sbjct: 126 ILNLRQIIDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETVKEV 185
Query: 68 KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
+ ++ + E+ + Q M++ + + + ++ + +E+ S +
Sbjct: 186 AFNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAEELAEVVKKLSESSQEIEEITSVI 245
Query: 128 EQ 129
Sbjct: 246 NS 247
Score = 36.5 bits (84), Expect = 0.005
Identities = 19/123 (15%), Positives = 55/123 (44%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
E++ S ++ +E+ +N ME++ + + + +E+ SS+ + +E+
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
+ + + E+ +E+ +S+E+ ++ +E+ + E+ K E+ +
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404
Query: 143 QTK 145
+ K
Sbjct: 405 KFK 407
Score = 36.1 bits (83), Expect = 0.007
Identities = 11/111 (9%), Positives = 44/111 (39%)
Query: 12 KSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSM 71
+ + ++ + + E + E+ S + + +Q S+E+ S++E+ ++
Sbjct: 123 NEMILNLRQIIDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETV 182
Query: 72 EQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQ 122
++ ++ + + E+ + Q M++ + + + + +
Sbjct: 183 KEVAFNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAEELAEVVKKLSE 233
Score = 35.7 bits (82), Expect = 0.008
Identities = 17/97 (17%), Positives = 47/97 (48%)
Query: 7 SMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQ 66
ME++ S + + +E+T SS+ + +++E+ + + + E+ +E+ +S+E+
Sbjct: 311 HMEESASEVSEGVKLVEETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEE 370
Query: 67 NKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
++ +E+ + E+ K E+ + + K
Sbjct: 371 LDDVTQENAAAVEELAAASEELKELAEKLLELVAKFK 407
Score = 35.4 bits (81), Expect = 0.010
Identities = 12/122 (9%), Positives = 51/122 (41%)
Query: 43 MEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQT 102
+ + ++ +++ E + E+ +S + +Q ++E+ S +E+ ++++
Sbjct: 126 ILNLRQIIDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETVKEV 185
Query: 103 KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSM 162
+ ++ + + + E+ + Q M++ + + + ++ +E+ S +
Sbjct: 186 AFNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAEELAEVVKKLSESSQEIEEITSVI 245
Query: 163 EQ 164
Sbjct: 246 NS 247
Score = 35.4 bits (81), Expect = 0.010
Identities = 18/109 (16%), Positives = 51/109 (46%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E+ + ME++ S + + +E+T SS+ + ++E+ + + + E+
Sbjct: 299 EEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVSQLISEIAAATEEQT 358
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTK 110
+ +E+ +S+E+ ++ + +E+ + E+ K E+ + + K
Sbjct: 359 AVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVAKFK 407
Score = 35.4 bits (81), Expect = 0.010
Identities = 18/123 (14%), Positives = 59/123 (47%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E++ S ++ +E+ ++ ME++ S + + +E+T S + + ++E+
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+ + ++ E+ +E+ +++E+ ++ ++E+ ++ E+ K E+ +
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404
Query: 122 QTK 124
+ K
Sbjct: 405 KFK 407
Score = 31.9 bits (72), Expect = 0.17
Identities = 11/115 (9%), Positives = 47/115 (40%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
++ + + E + E+ + + + +Q S+E+ +++E+ +++ + ++
Sbjct: 133 IDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETVKEVAFNAKEA 192
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQ 115
+ + E+ + Q M++ + + + ++ +E+ S +
Sbjct: 193 AALASEASQVAEEGGEEVRQAVEQMQEIAEELAEVVKKLSESSQEIEEITSVINS 247
Score = 30.3 bits (68), Expect = 0.51
Identities = 13/89 (14%), Positives = 45/89 (50%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ + +E+T SS+ + + +E+ + + ++ E+ +E+ + +E+ + ++
Sbjct: 319 VSEGVKLVEETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQEN 378
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTK 89
+++E+ ++ E+ K E+ + + K
Sbjct: 379 AAAVEELAAASEELKELAEKLLELVAKFK 407
Score = 27.6 bits (61), Expect = 3.9
Identities = 7/82 (8%), Positives = 33/82 (40%)
Query: 89 KSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFM 148
+ + ++ + + E + E+ + + +Q S+E+ +++E+ +
Sbjct: 123 NEMILNLRQIIDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETV 182
Query: 149 EQTKSSMEQTKSSMEQTKLQAK 170
++ + ++ + + A+
Sbjct: 183 KEVAFNAKEAAALASEASQVAE 204
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 39.7 bits (92), Expect = 5e-04
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E+ K +EQ K + + E+ K + E+ K + E+ K E+ K + E K
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
+ E K+ E+ K E+ K + K E+ K + E+ K E+ K+ E+ K E
Sbjct: 1689 KAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Query: 129 QTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
+ K E+ K + K E+ + + K ++ + +L + K
Sbjct: 1748 EAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
Score = 37.4 bits (86), Expect = 0.003
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E+ K +EQ K + K E+ + + E+ K + E+ K E+ K + E K
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+ E K E+ K+ E+ K + K E+ K + E+ K E+ K E+ K+ E
Sbjct: 1689 KAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Query: 122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQ 157
+ K E+ K K ++ + ++ ++ +E+
Sbjct: 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Score = 30.5 bits (68), Expect = 0.63
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
+ E+ K E+ K E + + E K E+ K + E+ K + K E+ K
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELK 1722
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+ E+NK E+ K+ E+ K E+ K E+ K + K E+ + + K +
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKK-DEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
Query: 122 QTKSTMEQTKNSMEQTK 138
+ + E K ME K
Sbjct: 1782 EEELDEEDEKRRMEVDK 1798
Score = 27.0 bits (59), Expect = 6.9
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E+ + + + E+ K + K E+ K E+ K E+ K E++K
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
E+ K+ E+ K + K E+ + + K ++ + + E KR ME K +
Sbjct: 1744 KKAEEAKK-DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
Query: 129 QTKNS 133
N
Sbjct: 1803 IFDNF 1807
>gnl|CDD|206779 cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP),
signaling domain. Methyl-accepting chemotaxis proteins
(MCPs or chemotaxis receptors) are an integral part of
the transmembrane protein complex that controls
bacterial chemotaxis, together with the histidine kinase
CheA, the receptor-coupling protein CheW,
receptor-modification enzymes, and localized
phosphatases. MCPs contain a four helix trans membrane
region, an N-terminal periplasmic ligand binding domain,
and a C-terminal HAMP domain followed by a cytoplasmic
signaling domain. This C-terminal signaling domain
dimerizes into a four-helix bundle and interacts with
CheA through the adaptor protein CheW.
Length = 200
Score = 37.2 bits (87), Expect = 0.002
Identities = 30/184 (16%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E+ S+E+ +S +Q +Q E+ + + E N M Q +++ +++E+ +
Sbjct: 1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELE 60
Query: 62 SSMEQNKSSMEQTKRFMEQTKS-----------TMEQTKSFM----------EQTKNSME 100
S + +E EQT E + F E++ + +
Sbjct: 61 ESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAK 120
Query: 101 QTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKS 160
+ + +E+ + E+ ME+T +E+ +E+T + E+ + +E+ +++ +
Sbjct: 121 EIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADGIQEISA 180
Query: 161 SMEQ 164
+ ++
Sbjct: 181 ATQE 184
Score = 34.9 bits (81), Expect = 0.012
Identities = 12/87 (13%), Positives = 45/87 (51%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
E++ + ++ + +E+ + E+ +ME+ +E+ +E+T E+ + +E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQT 123
+ +++ ++ ++ +S ++ +E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 33.7 bits (78), Expect = 0.025
Identities = 13/87 (14%), Positives = 47/87 (54%)
Query: 72 EQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTK 131
E++ ++ + +E+ + E+ +ME+T +E+ +E+T R E+ +++E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 132 NSMEQTKNSMEQTKSFMEQTKSSMEQT 158
+ +++ + ++ + ++ +++E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 33.7 bits (78), Expect = 0.030
Identities = 14/87 (16%), Positives = 48/87 (55%)
Query: 30 EQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTK 89
E++ + ++ + +E+ + E+ +ME+T +E+ +E+T R E+ +++E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 90 SFMEQTKNSMEQTKSSMEQTKSSMEQT 116
+++ + ++ +S ++ +++E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 33.0 bits (76), Expect = 0.056
Identities = 13/87 (14%), Positives = 45/87 (51%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTK 110
E++ + ++ + +E+ + E+ ME+T +E+ +E+T + E+ +S+E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 111 SSMEQTKRFMEQTKSTMEQTKNSMEQT 137
+++ ++ ++ ++ ++E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 31.8 bits (73), Expect = 0.13
Identities = 28/174 (16%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
E+ +S+E+ +S +Q + +Q E+ + + E + M Q S+++ +E+ +
Sbjct: 1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELE 60
Query: 83 STMEQTKSFMEQTKNSMEQT----------------------------KSSMEQTKSSME 114
+ + +E + EQT + E++ + +
Sbjct: 61 ESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAK 120
Query: 115 QTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQ 168
+ + +E+ + E+ +ME+T +E+ +E+T + E+ +S+E+
Sbjct: 121 EIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADG 174
Score = 30.3 bits (69), Expect = 0.39
Identities = 13/87 (14%), Positives = 44/87 (50%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E++ + ++ + +E+ + E+ +ME+T +E+ +E+T E+ S+E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQT 88
+++ ++ ++ ++ + +E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 29.1 bits (66), Expect = 0.88
Identities = 12/67 (17%), Positives = 37/67 (55%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
E+ +ME+T +E+ +E+T + E+ +S+E+ + +++ + ++ S ++
Sbjct: 133 TEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADGIQEISAATQEQSASTQEI 192
Query: 61 KSSMEQN 67
+++E+
Sbjct: 193 AAAVEEI 199
Score = 28.4 bits (64), Expect = 1.7
Identities = 13/87 (14%), Positives = 43/87 (49%)
Query: 65 EQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTK 124
E++ + ++ + +E+ + E+ ME+T +E+ +E+T + E+ +E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 125 STMEQTKNSMEQTKNSMEQTKSFMEQT 151
+++ + ++ S ++ + +E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/87 (16%), Positives = 45/87 (51%)
Query: 58 EQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTK 117
E++ + ++ + +E+ + E+ ME+T +E+ +E+T + E+ +S+E+
Sbjct: 113 EESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVA 172
Query: 118 RFMEQTKSTMEQTKNSMEQTKNSMEQT 144
+++ + ++ S ++ ++E+
Sbjct: 173 DGIQEISAATQEQSASTQEIAAAVEEI 199
>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 290
Score = 37.2 bits (87), Expect = 0.002
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 36 MEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQ 80
+E + S+EQ + + + + K +E+ +
Sbjct: 119 IEMIRESVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLLL 159
Score = 36.0 bits (84), Expect = 0.005
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 5 KISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQ 52
+E + S+EQ + + + + K +E+ S +
Sbjct: 116 NQVIEMIRESVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLLL 159
Score = 36.0 bits (84), Expect = 0.005
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 77 FMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQ 122
+E + ++EQ + + + + K +E+ +
Sbjct: 118 VIEMIRESVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLLL 159
Score = 35.3 bits (82), Expect = 0.010
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 90 SFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFME 149
+ + Q + + S+EQ + + + + K +E+ S +
Sbjct: 113 NLINQVIEMIRE----------SVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLL 158
Query: 150 Q 150
Sbjct: 159 L 159
Score = 34.9 bits (81), Expect = 0.012
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 41 NSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQ 94
N + Q +E + S+EQ + + + + K +E+ S +
Sbjct: 113 NLINQ---VIEMIRESVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLLL 159
Score = 32.2 bits (74), Expect = 0.11
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 119 FMEQTKSTMEQTKNSMEQTKNSMEQT---KSFMEQTKSSMEQTKSSMEQ 164
+ Q +E + S+EQ + + + K +E+ S +
Sbjct: 114 LINQV---IEMIRESVEQALTLYKGAGMPGDVLAELKELLEEMFSLLLL 159
>gnl|CDD|214599 smart00283, MA, Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer). Thought to undergo
reversible methylation in response to attractants or
repellants during bacterial chemotaxis.
Length = 262
Score = 35.3 bits (82), Expect = 0.010
Identities = 18/123 (14%), Positives = 61/123 (49%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
E++ S ++ +S +++ + + ++ME++ S +E+ +E+T +E+ +E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
+ +++ ++ ++ + E+ +++ ++T E+ + E+ E+ +E
Sbjct: 200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVE 259
Query: 157 QTK 159
+ K
Sbjct: 260 RFK 262
Score = 35.0 bits (81), Expect = 0.012
Identities = 26/192 (13%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+E+ ME+ +S+E+ + ++ ++ + + E+ + ++E + M+Q + +E+
Sbjct: 20 LEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEA 79
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQT----------------------------KSFM 92
S++E+ + S ++ + +QT +
Sbjct: 80 VSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLA 139
Query: 93 EQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTK 152
E++ S ++ +S +++ + + ME++ S +E+ +E+T +++E+ +E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 153 SSMEQTKSSMEQ 164
+++ ++ ++
Sbjct: 200 DLVQEIAAATDE 211
Score = 35.0 bits (81), Expect = 0.013
Identities = 15/92 (16%), Positives = 45/92 (48%)
Query: 73 QTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKN 132
+E+ + E+ +E+ ME+ +S+E+ ++ ++ + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 133 SMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
++E +M+Q + +E+ S++E+ + S ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 33.8 bits (78), Expect = 0.034
Identities = 13/92 (14%), Positives = 46/92 (50%)
Query: 52 QTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKS 111
++E+ + E+ +E+ ME+ +++E+ + ++ + + + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 112 SMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQ 143
++E M+Q + +E+ +++E+ + S ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 33.4 bits (77), Expect = 0.038
Identities = 14/92 (15%), Positives = 43/92 (46%)
Query: 31 QTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKS 90
++E+ E+ +E+ ME+ +S+E+ ++ ++ + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 91 FMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQ 122
+E +M+Q + +E+ S++E+ + ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 33.4 bits (77), Expect = 0.045
Identities = 17/114 (14%), Positives = 58/114 (50%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTK 110
E++ S ++ +S +++ + + ME++ S +E+ +E+T +++E+ S+E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 111 SSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
+++ ++ + E+ ++++ ++T + E+ ++ E+ E+
Sbjct: 200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEE 253
Score = 33.0 bits (76), Expect = 0.049
Identities = 15/92 (16%), Positives = 44/92 (47%)
Query: 10 QTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKS 69
++E+ + E+ +E+ ME+ S+E+ + ++ + + + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 70 SMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQ 101
++E M+Q + +E+ S +E+ + S ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 33.0 bits (76), Expect = 0.061
Identities = 15/92 (16%), Positives = 46/92 (50%)
Query: 24 QTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKS 83
++E+ + E+ +E+ ME+ S+E+ ++ ++ ++ + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 84 TMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQ 115
+E + M+Q + +E+ S++E+ + S ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 31.1 bits (71), Expect = 0.23
Identities = 19/123 (15%), Positives = 63/123 (51%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E++ S ++ +S +++ + + ++ME++ S +E+ +E+T +E+ +S+E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+++ ++ ++ E+ + +++ ++T E+ ++ E+ E+ +E
Sbjct: 200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVE 259
Query: 122 QTK 124
+ K
Sbjct: 260 RFK 262
Score = 31.1 bits (71), Expect = 0.23
Identities = 14/92 (15%), Positives = 43/92 (46%)
Query: 45 QTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKS 104
+E+ E+ +E+ ME+ +E+ + ++ + + + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 105 SMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQ 136
++E ++M+Q + +E+ S +E+ + S ++
Sbjct: 61 AVEDAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 31.1 bits (71), Expect = 0.24
Identities = 19/123 (15%), Positives = 60/123 (48%)
Query: 16 EQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTK 75
E++ ++ ES +++ + + +ME++ S +E+ +E+T ++E+ S+E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 76 RFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSME 135
+++ + ++ + E+ ++++ ++T + E+ E+ E+ +E
Sbjct: 200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVE 259
Query: 136 QTK 138
+ K
Sbjct: 260 RFK 262
Score = 30.7 bits (70), Expect = 0.28
Identities = 15/89 (16%), Positives = 44/89 (49%)
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
++E+ E+ +E+ ME+ S+E+ ++ ++ ++ + E+ + +E
Sbjct: 4 EAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVE 63
Query: 129 QTKNSMEQTKNSMEQTKSFMEQTKSSMEQ 157
+M+Q + +E+ S +E+ + S ++
Sbjct: 64 DAITAMDQIREVVEEAVSAVEELEESSDE 92
Score = 29.9 bits (68), Expect = 0.58
Identities = 16/123 (13%), Positives = 59/123 (47%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
E++ S ++ +S +++ + + + ME++ + +E+ +E+ ++E+ +E+
Sbjct: 140 ERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIA 199
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
+++ + ++ E+ +++++ ++T E+ + E+ E+ +E
Sbjct: 200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVE 259
Query: 143 QTK 145
+ K
Sbjct: 260 RFK 262
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/79 (13%), Positives = 34/79 (43%)
Query: 87 QTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKS 146
+E+ E+ +E+ ME+ +E+ + ++ + + + E+ +
Sbjct: 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60
Query: 147 FMEQTKSSMEQTKSSMEQT 165
+E ++M+Q + +E+
Sbjct: 61 AVEDAITAMDQIREVVEEA 79
Score = 27.6 bits (62), Expect = 3.5
Identities = 16/103 (15%), Positives = 50/103 (48%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ +ME++ S +E+ +E+T ++E+ S+E+ + +++ + ++ E+
Sbjct: 160 TNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEV 219
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
+++++ ++T E+ + E+ E+ +E+ K
Sbjct: 220 NAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVERFK 262
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 35.7 bits (82), Expect = 0.012
Identities = 21/142 (14%), Positives = 55/142 (38%)
Query: 5 KISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSM 64
++ KSS++ + F + E + TK + +K E ME+ K + E K +
Sbjct: 21 VKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEV 80
Query: 65 EQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTK 124
++ + + +K+ ++ + Q ++ + + + +++ + +
Sbjct: 81 KEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLN 140
Query: 125 STMEQTKNSMEQTKNSMEQTKS 146
+M +EQT N +
Sbjct: 141 KSMAAQARLLEQTGNKFGTADA 162
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 32.0 bits (73), Expect = 0.17
Identities = 20/142 (14%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 27 SSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTME 86
S + Q + ++Q K ++ KS + + +E+ + +++ S++ ++
Sbjct: 373 SELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQI--------A 424
Query: 87 QTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKS 146
Q + + +N + ++++ +E+ +E K +E + T+++ +E+ +
Sbjct: 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFE-LERAIT 483
Query: 147 FMEQTKSSMEQTKSSMEQTKLQ 168
++ K ++++ + + + KLQ
Sbjct: 484 IADKAKKTLKEFREKLLERKLQ 505
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/89 (12%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 26 ESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTM 85
E + Q + + +N + ++++ +E+ +E K ++E + +Q +
Sbjct: 420 EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK---TLDEKTKQKINAF 476
Query: 86 EQTKSFM--EQTKNSMEQTKSSMEQTKSS 112
E ++ ++ K ++++ + + + K
Sbjct: 477 ELERAITIADKAKKTLKEFREKLLERKLQ 505
>gnl|CDD|143806 pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP)
signalling domain. This domain is thought to transduce
the signal to CheA since it is highly conserved in very
diverse MCPs.
Length = 213
Score = 30.9 bits (70), Expect = 0.25
Identities = 14/123 (11%), Positives = 60/123 (48%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
E++ + ++ ++ +E+ + +S++Q ++ +E +E T +++ + +
Sbjct: 89 ERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIVDAVAEIA 148
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
+ +++ ++ ++ + ++Q + + + +Q +E++ + E + E+ +S+
Sbjct: 149 DIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAEELTASVA 208
Query: 157 QTK 159
Q +
Sbjct: 209 QFR 211
Score = 30.5 bits (69), Expect = 0.32
Identities = 12/121 (9%), Positives = 59/121 (48%)
Query: 44 EQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
++ + E++ + ++ ++ +E+ + ++QT++ +E + +E T ++++
Sbjct: 82 DEVRKLAERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIV 141
Query: 104 SSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSME 163
++ + +++ ++ + ++Q ++ + +Q + +E++ ++ E + E
Sbjct: 142 DAVAEIADIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAE 201
Query: 164 Q 164
+
Sbjct: 202 E 202
Score = 30.1 bits (68), Expect = 0.51
Identities = 15/132 (11%), Positives = 63/132 (47%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
++ + E++ ++ + +E+ + +S++QT+ +E + +E T +++
Sbjct: 82 DEVRKLAERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIV 141
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
+++ + +++ ++ ++ ++Q + + +Q +E++ + E + E
Sbjct: 142 DAVAEIADIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAE 201
Query: 157 QTKSSMEQTKLQ 168
+ +S+ Q +++
Sbjct: 202 ELTASVAQFRIK 213
Score = 29.7 bits (67), Expect = 0.73
Identities = 14/123 (11%), Positives = 61/123 (49%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E++ + ++ ++ +E+ + +S++QT+ +E + +E T ++++ ++ +
Sbjct: 89 ERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIVDAVAEIA 148
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
+++ ++ + ++Q + + +Q + +E++ ++ E + E+ +++
Sbjct: 149 DIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAEELTASVA 208
Query: 129 QTK 131
Q +
Sbjct: 209 QFR 211
Score = 29.3 bits (66), Expect = 0.81
Identities = 14/123 (11%), Positives = 59/123 (47%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E++ + ++ ++ +E+ + +S++QT++ +E +E T +++ +++ +
Sbjct: 89 ERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIVDAVAEIA 148
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+++ ++ ++ ++Q + + +Q +E++ ++ E + E+ +
Sbjct: 149 DIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAEELTASVA 208
Query: 122 QTK 124
Q +
Sbjct: 209 QFR 211
Score = 28.6 bits (64), Expect = 1.7
Identities = 13/103 (12%), Positives = 49/103 (47%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ S++QT++ +E + +E T ++++ ++ + + +++ + ++ ++Q
Sbjct: 109 TNDSTASIQQTRTEVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQV 168
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
++ + +Q +E++ + E + E+ S+ Q +
Sbjct: 169 NQAVARIDQVTQQNAALVEESAAAAETLEEQAEELTASVAQFR 211
Score = 28.2 bits (63), Expect = 1.9
Identities = 13/119 (10%), Positives = 61/119 (51%)
Query: 51 EQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTK 110
++ + E++ + ++ ++ +E+ + + ++++QT++ +E +E T ++++
Sbjct: 82 DEVRKLAERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIV 141
Query: 111 SSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQA 169
++ + +++ + ++ ++Q ++ + +Q + +E++ ++ E + QA
Sbjct: 142 DAVAEIADIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQA 200
Score = 27.4 bits (61), Expect = 3.7
Identities = 14/123 (11%), Positives = 59/123 (47%)
Query: 30 EQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTK 89
E++ + ++ + +E+ + S++QT++ +E + +E T +++ + +
Sbjct: 89 ERSAQAAKEIEALIEEIVKQTNDSTASIQQTRTEVEVGSTIVESTGEALKEIVDAVAEIA 148
Query: 90 SFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFME 149
+++ + ++ + ++Q ++ + + +Q + +E++ + E + E+ + +
Sbjct: 149 DIVQEIAAASDEQSAGIDQVNQAVARIDQVTQQNAALVEESAAAAETLEEQAEELTASVA 208
Query: 150 QTK 152
Q +
Sbjct: 209 QFR 211
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.8 bits (70), Expect = 0.43
Identities = 11/61 (18%), Positives = 29/61 (47%)
Query: 22 MEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQT 81
+E+ +E +E+ S+E+ + +E+ N +++ KS +++N + +
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDF 131
Query: 82 K 82
K
Sbjct: 132 K 132
Score = 30.4 bits (69), Expect = 0.46
Identities = 11/61 (18%), Positives = 31/61 (50%)
Query: 106 MEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQT 165
+E+ +E + +E+ ++E+ N +E+ N +++ KSF+++ + + +
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDF 131
Query: 166 K 166
K
Sbjct: 132 K 132
Score = 30.0 bits (68), Expect = 0.72
Identities = 11/61 (18%), Positives = 30/61 (49%)
Query: 50 MEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQT 109
+E+ +E +E+N S+E+ +E+ + +++ KSF+++ + + +
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDF 131
Query: 110 K 110
K
Sbjct: 132 K 132
Score = 27.7 bits (62), Expect = 3.5
Identities = 9/61 (14%), Positives = 29/61 (47%)
Query: 36 MEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQT 95
+E+ +E +E+ S+E+ + +E+ + +++ K F+++ + + +
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDF 131
Query: 96 K 96
K
Sbjct: 132 K 132
Score = 27.3 bits (61), Expect = 6.0
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 92 MEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTK 138
+E+ S+E+ + +E+ + +++ K F+++ + + N K
Sbjct: 86 VEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFK 132
Score = 27.0 bits (60), Expect = 7.2
Identities = 8/61 (13%), Positives = 28/61 (45%)
Query: 92 MEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQT 151
+E+ +E +E+ S+E+ +E+ + +++ K+ +++ + + +
Sbjct: 72 LEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDF 131
Query: 152 K 152
K
Sbjct: 132 K 132
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 30.2 bits (68), Expect = 0.64
Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 10/137 (7%)
Query: 22 MEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKN----SMEQTKSSMEQNKSSMEQTKRF 77
++ S ++ +++N ++ ++ E+ N S TK + S + RF
Sbjct: 154 IKTWNQSAWNARNEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRF 213
Query: 78 -MEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQ 136
T + + +S E + TK++ + ++ NS
Sbjct: 214 KGYADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASA-----AHASEVNAANSATA 268
Query: 137 TKNSMEQTKSFMEQTKS 153
S + K ++ K+
Sbjct: 269 AATSANRAKQQADRAKT 285
Score = 29.5 bits (66), Expect = 1.2
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 65 EQNKSSMEQTK---RFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRF-M 120
N+S+ R + Q + F ++ S TK + S + RF
Sbjct: 156 TWNQSAWNARNEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKG 215
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGS 172
T + +S E + TK++ + + +++ A S
Sbjct: 216 YADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAA--HASEVNAANS 265
>gnl|CDD|218186 pfam04636, PA26, PA26 p53-induced protein (sestrin). PA26 is a
p53-inducible protein. Its function is unknown. It has
similarity to pfam04636 in its N-terminus.
Length = 450
Score = 29.7 bits (67), Expect = 0.93
Identities = 12/82 (14%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 41 NSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKS-FMEQTKNSM 99
N ++ +++ M +++ ++ +E M++ + + +++ E+ + F ++ K S+
Sbjct: 206 NDIDNSEAVMSLLFRKVQRPETEVEALMERMKKLQEERDDDEASQEEMTTRFEKEKKESL 265
Query: 100 EQTKSSMEQTKSSMEQTKRFME 121
S+ Q R++E
Sbjct: 266 LVESSADIQESVPPCDVSRYVE 287
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
+ +E+ M +++ + +E M++ + + ++S E E T RF ++ K
Sbjct: 209 DNSEAVMSLLFRKVQRPETEVEALMERMKKLQEERDDDEASQE------EMTTRFEKEKK 262
Query: 83 STMEQTKSFMEQTK 96
++ S Q
Sbjct: 263 ESLLVESSADIQES 276
Score = 27.8 bits (62), Expect = 4.0
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
M +++ ++ +E M++ + + ++S E+ E+ K K S+
Sbjct: 215 MSLLFRKVQRPETEVEALMERMKKLQEERDDDEASQEEMTTRFEKEK------KESLLVE 268
Query: 61 KSSMEQNKSSMEQTKRFME 79
S+ Q R++E
Sbjct: 269 SSADIQESVPPCDVSRYVE 287
Score = 27.4 bits (61), Expect = 5.4
Identities = 12/74 (16%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 65 EQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTK 124
+ +++ M R +++ ++ +E M++ + + ++S E E T RF ++ K
Sbjct: 209 DNSEAVMSLLFRKVQRPETEVEALMERMKKLQEERDDDEASQE------EMTTRFEKEKK 262
Query: 125 STMEQTKNSMEQTK 138
++ ++ Q
Sbjct: 263 ESLLVESSADIQES 276
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 29.8 bits (67), Expect = 0.93
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 3/162 (1%)
Query: 16 EQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTK 75
E F + E+S++ ++ +N + + +TK + +N S + +T+
Sbjct: 363 ENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTE 422
Query: 76 RFMEQTKSTMEQTKSFME--QTKNSMEQTKSSMEQTKSSMEQTKRFMEQT-KSTMEQTKN 132
+ + E + E +N E + S E + Q T E
Sbjct: 423 NILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLIDTGEFDLE 482
Query: 133 SMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKL 174
+ + E E + + + S ++ + ++
Sbjct: 483 NNFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFAQS 524
Score = 27.1 bits (60), Expect = 6.2
Identities = 18/163 (11%), Positives = 50/163 (30%), Gaps = 4/163 (2%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
++ + + S + +T+ + + S + +T+N + + E E+T
Sbjct: 384 KKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTENILTNSPLKDELL----EKTT 439
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+ + + ST + ++ E + + E + E
Sbjct: 440 EIINIENPQEFEFGQIGNDIISTEIAQLDENQNLIDTGEFDLENNFSNSFNPENGNKIDE 499
Query: 122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
T + + S ++N +SF + + +
Sbjct: 500 NINETFDTSTISANLSENKTNFAQSFNNKDTNLINSEIPIDLI 542
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.7 bits (67), Expect = 0.94
Identities = 17/154 (11%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Query: 7 SMEQTKSSMEQTKSFMEQTESSMEQ-TKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSME 65
+E+ + + + +E+ E +E+ K + + + K + + + + + S+
Sbjct: 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
Query: 66 QNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKS 125
+ + +E + + + ++ +++ + +E+ + +E+ + ++ + K +E ++
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 126 TMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTK 159
+E+ +T++ ++ + +E+ K + + K
Sbjct: 372 ELEEVDKEFAETRDELKDYREKLEKLKREINELK 405
Score = 28.5 bits (64), Expect = 2.1
Identities = 15/156 (9%), Positives = 71/156 (45%)
Query: 8 MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
+ K + + ++ + E S+ + + +E + + + ++ +++ +E+ + +E+
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Query: 68 KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
+ ++ + K +E ++ +E+ +T+ ++ + +E+ KR + + K +
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
Query: 128 EQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSME 163
++ + +++ + + + ++ + + + E
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
Score = 28.1 bits (63), Expect = 2.8
Identities = 15/166 (9%), Positives = 72/166 (43%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ + + + + S+ + + +E E + + ++ +++ +E+ + +E+ + ++
Sbjct: 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
+ K +E + +E+ +T+ ++ + +E+ K + + K +++ + +
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
++ + ++ + + + + E +++ + +EQ
Sbjct: 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
Score = 27.7 bits (62), Expect = 4.0
Identities = 21/166 (12%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E K + + + + + + ++ + + S+ + + +E + + + ++ +++
Sbjct: 276 ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
+ +E+ +R +E+ + ++ + K +E ++ +E+ +T+ ++ + +E
Sbjct: 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
Query: 129 QTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKL 174
+ K + + K E + E + S E + ++AK ++L
Sbjct: 396 KLKREINELKR--ELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
Score = 27.0 bits (60), Expect = 7.8
Identities = 14/156 (8%), Positives = 71/156 (45%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ K + + ++ + + + + E +E + + + + +++ + +E+ + +E+
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
+ ++ + K +E ++ +E+ +T++ ++ + +E+ K + + KR +
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
++ + +++ + ++ ++ + + + E
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 29.4 bits (66), Expect = 1.0
Identities = 11/102 (10%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 5 KISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSM 64
++++ + ++++ +Q E +++Q ++ +E K +EQ + + Q + + +
Sbjct: 79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLF 138
Query: 65 EQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSM 106
++ S E+ ++ + + K+ + ++
Sbjct: 139 KKGLISREE----LDHARKALLSAKAALNAAIQEQLNANQAL 176
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.3 bits (66), Expect = 1.2
Identities = 18/166 (10%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
M+ + ++ ++ +E + +++ ESS+E+ S ++ + ++Q + ++ Q
Sbjct: 258 MDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQV----NEELTTVRQE 313
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
+E+ ++T + ++ + + ++ + + + + E + +
Sbjct: 314 NEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHR------TPLI 367
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
++ +S E+ +N ++T+ +++ K + + + ++ + K
Sbjct: 368 DEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYK 413
>gnl|CDD|235621 PRK05842, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 295
Score = 28.8 bits (64), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 93 EQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNS 140
E+ K +M++ S+M+ K + E K F K TME M+ + +
Sbjct: 69 EENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLKA 116
Score = 28.8 bits (64), Expect = 1.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 89 KSFMEQTKNSMEQTKSSMEQTKSSMEQTKRF-----MEQTKSTMEQTKNSMEQTKNSMEQ 143
K F+EQ KN Q ++ +T + QT + E+ K TM++ ++M+ K + E
Sbjct: 35 KLFLEQLKN---QDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSNKETNES 91
Query: 144 TKSFMEQTKSSMEQTKSSMEQT 165
K F K +ME M+ +
Sbjct: 92 LKDFQGALKDTMENLNKGMDDS 113
Score = 28.0 bits (62), Expect = 2.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSS 70
E+ + +M++ S+M+ K + E K F K++ME M+ + +
Sbjct: 69 EENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLKA 116
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 28.1 bits (63), Expect = 2.3
Identities = 15/105 (14%), Positives = 54/105 (51%)
Query: 36 MEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQT 95
+EQ + + + ++ +E+ S++Q++++ +++ +Q + + K+ ++ ++ +E
Sbjct: 69 VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNTLKALLKNAQANLENI 128
Query: 96 KNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNS 140
+ + + + +E KR +E + +++ + E+TK +
Sbjct: 129 EQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEARLDYEKTKKA 173
Score = 27.3 bits (61), Expect = 3.6
Identities = 15/103 (14%), Positives = 52/103 (50%)
Query: 15 MEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQT 74
+EQ + + + E+ +E+ S++Q++ + ++ +Q + + K+ ++ ++++E
Sbjct: 69 VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNTLKALLKNAQANLENI 128
Query: 75 KRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTK 117
++ + + + +E K +E + +++ + E+TK
Sbjct: 129 EQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEARLDYEKTK 171
Score = 26.5 bits (59), Expect = 6.2
Identities = 15/119 (12%), Positives = 58/119 (48%)
Query: 57 MEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
+EQ + + + ++ +E+ + ++Q+++ ++ +Q + + K+ ++ ++++E
Sbjct: 69 VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNTLKALLKNAQANLENI 128
Query: 117 KRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLN 175
++ + + + +E K +E + +++ + E+TK + + A+ +K
Sbjct: 129 EQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEARLDYEKTKKAAYKAACAAQEAKQR 187
Score = 26.5 bits (59), Expect = 6.5
Identities = 16/120 (13%), Positives = 59/120 (49%)
Query: 50 MEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQT 109
+EQ + + + ++ +E+ S++Q++ ++ +Q ++ + K ++ ++++E
Sbjct: 69 VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNTLKALLKNAQANLENI 128
Query: 110 KSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQA 169
+ ++ + + +E K +E + +++ + E+TK + + + ++ K +A
Sbjct: 129 EQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEARLDYEKTKKAAYKAACAAQEAKQRA 188
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.5 bits (64), Expect = 2.4
Identities = 22/152 (14%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
+Q E + Q + +E+ K + + ++ ++Q + +++ ++ + K +E E+ +
Sbjct: 624 KQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIA--ERKQ 681
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
Q + Q K +EQ ++ +E K F E + + + + N +
Sbjct: 682 QAETQLRQLDAQLKQLLEQQQAFLEALKD------DFRELRTERLAKWQVVEGELDNQLA 735
Query: 143 QTKSFMEQTKSSMEQTKSSMEQ---TKLQAKG 171
Q + +E ++ + +++ +L +
Sbjct: 736 QLSAAIEAARTQAKARLKELKKQYDRELASLD 767
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 28.0 bits (63), Expect = 3.4
Identities = 9/61 (14%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 20 SFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFME 79
S++EQ + Q ++ E+ + + + + ++ + K S ++ KS +++ ++
Sbjct: 237 SYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGK----AAASKAKKAKSRIKRLEKLEA 292
Query: 80 Q 80
+
Sbjct: 293 R 293
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 27.5 bits (61), Expect = 4.7
Identities = 12/73 (16%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 103 KSSMEQTKS-SMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSS 161
+SS+ Q K + E ++ ++Q + + + +++++ + + + + + + K+
Sbjct: 1266 RSSLNQMKPKTFEMQEKEIQQNFELLAKLEKTLDKSDTAEKLREDIPKLKDLLIAKQKAY 1325
Query: 162 MEQTKLQAKGSKL 174
E +LQ K L
Sbjct: 1326 PEMVQLQYKSEAL 1338
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 27.3 bits (60), Expect = 5.5
Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 24 QTESSMEQTKSSMEQTKNSMEQ-TKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
+ +S E+ K ++ + +M+ + +Q +N+ +Q ++ N + Q
Sbjct: 517 ERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQ--------- 567
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
+ ++ M+Q +N +Q K + Q ++ M + M ME
Sbjct: 568 ---QDLQNMMDQIENLARS--GDRDQAKQLLSQLQQMMNNLQMGQPGQGQQMGDQSGDME 622
Query: 143 QTKSFMEQTKSSMEQTKSSMEQT 165
Q M + M + + ++T
Sbjct: 623 QQ---MNKLGELMRKQQQLRDET 642
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.2 bits (60), Expect = 6.4
Identities = 25/160 (15%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 6 ISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSME 65
I +E +S + K + ES +++ + K+ ++++ +E N++ + ++
Sbjct: 580 IDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQ 639
Query: 66 QNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKN---SMEQTKSSMEQTKSSMEQTKRFMEQ 122
+NK +E+ + ++ K + + S + K + + ++++++ +++ K +
Sbjct: 640 ENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRAR 699
Query: 123 TKSTME---QTKNSMEQTKNSMEQTKSFMEQTKSSMEQTK 159
+ST+E N + N + +T M++ K ++ K
Sbjct: 700 LESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLK 739
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.1 bits (60), Expect = 6.5
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 15 MEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQT 74
+EQ K+F + + + + + +EQ +E+ E+ K +EQ +++
Sbjct: 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558
Query: 75 KRFMEQTKSTMEQTKSFMEQTKNSMEQTKS---SMEQTKSSMEQTKRFMEQTKSTMEQTK 131
+R + E K E K ++ +S +++ K + + +E E +
Sbjct: 559 ERNKKL-----ELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQ 613
Query: 132 NSMEQTKN 139
++ N
Sbjct: 614 KIPQKPTN 621
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 27.3 bits (60), Expect = 6.5
Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 16/181 (8%)
Query: 8 MEQTKSSMEQTKSFMEQTESSMEQTKSSME-QTKNSMEQTKSFMEQTKNSMEQTKSSMEQ 66
+ +TK+ +++ ++ E+ + + K Q K F + +
Sbjct: 147 LRRTKTLLQR--ELEDRPETGVAGRVTVPHGSAKRRDFQDKLF----SGEFVKRDEPDQN 200
Query: 67 NKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKST 126
+ T+ + E+ E S+ + E+ + +
Sbjct: 201 SPDVKSDTRADESISDLEFEKFAKRRGSRDVDPEDLYRSIMMLQGIHERIREKSSANSRS 260
Query: 127 MEQTKNSMEQ---------TKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLNYT 177
E++ S+++ Q+ + KS + + +T +A+ L
Sbjct: 261 DERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLRRSKTIDRAEACDLEEL 320
Query: 178 S 178
Sbjct: 321 D 321
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase.
Length = 588
Score = 26.9 bits (59), Expect = 6.7
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 75 KRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKR-FM---EQTKSTMEQT 130
K FM TK + ++ +F QT+ +M + S K+ ++ KR FM E + +E+
Sbjct: 71 KAFMLATKDAITKSSNFTGQTEGNMGSSISP--NNKAVLDYCKRVFMYALEDLSTIVEEM 128
Query: 131 KNSMEQTKNSMEQTKSFM 148
+ Q + ++Q K ++
Sbjct: 129 GEDLNQIGSKIDQLKQWL 146
>gnl|CDD|185008 PRK15048, PRK15048, methyl-accepting chemotaxis protein II;
Provisional.
Length = 553
Score = 26.9 bits (59), Expect = 7.3
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 44 EQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
EQ S +E+T SMEQ ++++QN + Q + + T + ++ +M +
Sbjct: 294 EQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIA 353
Query: 104 SS 105
S
Sbjct: 354 DS 355
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 26.6 bits (59), Expect = 8.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 104 SSMEQTKSSMEQTKRFMEQTK 124
+S+EQ + +M++ KRF+E K
Sbjct: 358 TSLEQLQEAMKRMKRFVENKK 378
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 26.9 bits (59), Expect = 9.2
Identities = 13/97 (13%), Positives = 35/97 (36%)
Query: 55 NSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSME 114
++ T ++ + + R M + K + T + + + + S + E
Sbjct: 2088 EELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLERE 2147
Query: 115 QTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQT 151
F+E + + + + + K S+ + KS +
Sbjct: 2148 VKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPA 2184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.292 0.0996 0.230
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,297,417
Number of extensions: 452114
Number of successful extensions: 1993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 574
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 56 (25.4 bits)