RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5171
(180 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 54.1 bits (130), Expect = 4e-09
Identities = 24/163 (14%), Positives = 67/163 (41%)
Query: 8 MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
E+ ++ K M+Q +E+ E + ++ K + ME ME
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 68 KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
+ + + ++ +E+ S + + E+ ++ + K+ E S +E + E+++ +
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 128 EQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
E+ K +E + + + + ++ + ++ + E+ A
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Score = 51.4 bits (123), Expect = 3e-08
Identities = 23/164 (14%), Positives = 64/164 (39%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
E+ ++ K M+Q +E+ E + ++ K + + ME ME
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
+ + + + +E+ + + E+ + + KN E S +E E++++ +
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
E+ K +E + + + ++ + ++ + E+ +
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Score = 49.8 bits (119), Expect = 1e-07
Identities = 27/170 (15%), Positives = 67/170 (39%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ K +E+ ME E+ ++ K M+Q +E+ E + ++
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
K + + ME ME + + + + +E+ + + + E+ ++ + K
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
E S +E E+++ +E+ K +E S + + + ++ + K
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Score = 49.4 bits (118), Expect = 1e-07
Identities = 27/173 (15%), Positives = 70/173 (40%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
E+ ++ + K +E+ ME E+ ++ K M+Q +E+ E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
+ ++ K + + + ME ME + + + + +E+ S + + E+ + +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
+ K+ E + +E E+++ +E+ K +E S + + + +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Score = 49.1 bits (117), Expect = 2e-07
Identities = 23/170 (13%), Positives = 67/170 (39%), Gaps = 3/170 (1%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
M+Q + +E+ E + ++ + + + ME ME + + + + +E+
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
S + N + E+ + + + K+ E S +E E+++ +E+ K +E
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS-- 1070
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
+ + + + + K + + + ++ + +E S + +
Sbjct: 1071 -DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Score = 47.1 bits (112), Expect = 1e-06
Identities = 24/164 (14%), Positives = 65/164 (39%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+E+ ME E+ ++ + M+Q +E+ E + ++ K + +
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
ME + ME + + + +E+ S + E+ ++ + K+ E +
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
E E+++ +E+ K +E S + + + ++ + ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Score = 45.6 bits (108), Expect = 3e-06
Identities = 24/172 (13%), Positives = 69/172 (40%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
E +EQ + + + K+ +++ + + + E+ + + K +E+ + ME
Sbjct: 876 AEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
E+ ++ K+ M+Q +E+ E + ++ K + + ME M
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGS 172
E + + + + +E+ + + + E+ ++ + K+ E + +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047
Score = 44.4 bits (105), Expect = 6e-06
Identities = 26/173 (15%), Positives = 68/173 (39%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+ + K +++ + + + E+ + K +E+ + ME E+ ++
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
K M+Q +E+ E + ++ K + ME ME + + + ++ +
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
E+ S + E+ ++ + K+ E S +E E+++ + + K
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
Score = 44.1 bits (104), Expect = 9e-06
Identities = 25/170 (14%), Positives = 64/170 (37%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+EQ + + K+ +++ + + E+ + + K +E+ ME E+
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
++ K M+Q +E+ E + ++ K + + ME ME +
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
+ + +E+ + + E+ + + K+ E S +E + +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Score = 38.7 bits (90), Expect = 7e-04
Identities = 24/164 (14%), Positives = 63/164 (38%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
++ ++ + E +EQ + + + K+ +++ + + + E+ + +
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
K +E+ ME E+ ++ K M+Q +E+ E + ++ K
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
+ ME ME N + + + +E+ S + + E+
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Score = 27.9 bits (62), Expect = 2.1
Identities = 18/129 (13%), Positives = 46/129 (35%)
Query: 50 MEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQT 109
++ ++ + E +EQ + + K+ +++ + E+ + +
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 110 KSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQA 169
K +E+ ME E+ ++ K M+Q +E+ E + ++ K+ A
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 170 KGSKLNYTS 178
G
Sbjct: 982 DGKIKKMED 990
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.1 bits (120), Expect = 8e-08
Identities = 16/157 (10%), Positives = 57/157 (36%), Gaps = 4/157 (2%)
Query: 23 EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
++ ++ +E +++ + S+ + +++E S+ + R +
Sbjct: 913 ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME----QTKSTMEQTKNSMEQTK 138
E+ S+++ + + + + K+ +E + K EQ + +++
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 139 NSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLN 175
++ K + + + + + KL + +L
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/167 (10%), Positives = 65/167 (38%), Gaps = 6/167 (3%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
++ I +E +++ + S+ + +++E T ++ + + E+
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
+ S+++ + + + + QT++ + + ++ K EQ S +++ ++
Sbjct: 980 KNATNRVLSLQEE---IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
Query: 122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQ 168
K + + + + + K E + ++ + E+ + Q
Sbjct: 1037 TEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL---NDERLRYQ 1080
Score = 45.1 bits (107), Expect = 5e-06
Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 6/147 (4%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
+E + +++ + + + +++E T S+ + S + E+ +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTME----QTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
S+++ + + + + K T+E + K EQ + +++ + ++ K + +
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR- 1044
Query: 117 KRFMEQTKSTMEQTKNSMEQTKNSMEQ 143
R +Q K E + + + +E
Sbjct: 1045 -RIHDQAKEITETMEKKLVEETKQLEL 1070
Score = 35.1 bits (81), Expect = 0.008
Identities = 14/167 (8%), Positives = 51/167 (30%), Gaps = 2/167 (1%)
Query: 3 QTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKS 62
Q M + + + ++ + + + + + KS + Q +
Sbjct: 823 QKFQRMYVVRKRYQCMRDATIALQALLRGYLV-RNKYQMMLREHKSIIIQKHVRGWLARV 881
Query: 63 SMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK-NSMEQTKSSMEQTKSSMEQTKRFME 121
+ ++ + + + E K +E ++ +E +++
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941
Query: 122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQ 168
+ ++ + N++E T ++ + + E+ + L
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 44.6 bits (106), Expect = 4e-06
Identities = 21/139 (15%), Positives = 58/139 (41%)
Query: 20 SFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFME 79
S M+ ++ S+E+ + E+ + + M+ + +E +S+++T E
Sbjct: 2 SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61
Query: 80 QTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKN 139
+ S + +Q + +Q+ ++ ++++ ++ + + +E +
Sbjct: 62 EISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQK 121
Query: 140 SMEQTKSFMEQTKSSMEQT 158
E+ SF+E + EQT
Sbjct: 122 GAEEITSFVETINAIAEQT 140
Score = 43.5 bits (103), Expect = 1e-05
Identities = 16/122 (13%), Positives = 47/122 (38%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
M+ + S+E+ E+ + + M+ +E + +++T E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
S+ + S +Q F +Q+ ++ +++ +S + + +E ++
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123
Query: 121 EQ 122
E+
Sbjct: 124 EE 125
Score = 43.5 bits (103), Expect = 1e-05
Identities = 16/122 (13%), Positives = 51/122 (41%)
Query: 8 MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
M+ ++ +E+ + E+ + + M+ + +E S+++T + E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 68 KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
S+ + +Q S +Q+ ++ +++++ +S + +R +E +
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123
Query: 128 EQ 129
E+
Sbjct: 124 EE 125
Score = 43.1 bits (102), Expect = 2e-05
Identities = 19/137 (13%), Positives = 54/137 (39%)
Query: 15 MEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQT 74
M+ ++ S+E+ + E+ N + M+ +E +S+++ + E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 75 KRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSM 134
+ + +Q SF +Q+ ++ ++++ + + +E +
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123
Query: 135 EQTKNSMEQTKSFMEQT 151
E+ + +E + EQT
Sbjct: 124 EEITSFVETINAIAEQT 140
Score = 42.3 bits (100), Expect = 3e-05
Identities = 16/117 (13%), Positives = 47/117 (40%)
Query: 48 SFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSME 107
S M+ + S+E+ + E+ + M+ + +E S+++T + E
Sbjct: 2 SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61
Query: 108 QTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
+ S+ + +Q S +Q+ ++ +++++ +S + + +E
Sbjct: 62 EISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVES 118
Score = 42.3 bits (100), Expect = 3e-05
Identities = 15/122 (12%), Positives = 51/122 (41%)
Query: 43 MEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQT 102
M+ ++ S+E+ + E+ + + + M+ + +E + +++T E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 103 KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSM 162
S+ + S +Q F +Q+ ++ +++++ + + + +E +
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123
Query: 163 EQ 164
E+
Sbjct: 124 EE 125
Score = 40.8 bits (96), Expect = 9e-05
Identities = 12/128 (9%), Positives = 58/128 (45%)
Query: 37 EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
E+++ + E + + + ++ E + + +E+ + ++ + +E+
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232
Query: 97 NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
++ +++E+ +++++ M + E+ NS+++ +++ + E+ S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292
Query: 157 QTKSSMEQ 164
+ +++
Sbjct: 293 TIRENVQM 300
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/137 (10%), Positives = 59/137 (43%)
Query: 9 EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
E+++ + E + + + S E + +E+ ++ + ++E+
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232
Query: 69 SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
++ +E+ + +++ + M + + E+ +S+++ + +++ E+ S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292
Query: 129 QTKNSMEQTKNSMEQTK 145
+ +++ K + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309
Score = 38.8 bits (91), Expect = 5e-04
Identities = 12/110 (10%), Positives = 43/110 (39%)
Query: 57 MEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
M+ ++ S+E+ + E+ + + M+ +E +S+++T + E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 117 KRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
+ + +Q + +Q+ ++ +++ +S + +
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVE 113
Score = 38.4 bits (90), Expect = 6e-04
Identities = 14/137 (10%), Positives = 63/137 (45%)
Query: 30 EQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTK 89
E+++ + E + + + +S E + + +E+ ++ + +E+
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232
Query: 90 SFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFME 149
++ ++E+ +++++ ++M + + E+ +++++ +++ S E+ S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292
Query: 150 QTKSSMEQTKSSMEQTK 166
+ +++ K + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/137 (10%), Positives = 61/137 (44%)
Query: 2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
E+++ + E + + + +S E + + +E+ ++ + ++E+
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232
Query: 62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
++ +++E+ +++ + M + E+ NS+++ + +++ +S E+ ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292
Query: 122 QTKSTMEQTKNSMEQTK 138
+ ++ K + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/137 (9%), Positives = 61/137 (44%)
Query: 16 EQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTK 75
E+++ E + + +S E + + +E+ ++ + ++E+
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232
Query: 76 RFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSME 135
++ + +E+ + +++ +M + + E+ +S+++ +++ ++ E+ + ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292
Query: 136 QTKNSMEQTKSFMEQTK 152
+ +++ K + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/110 (12%), Positives = 43/110 (39%)
Query: 64 MEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQT 123
M+ ++ +E+ E+ + + M+ + +E +S+++T E+
Sbjct: 4 MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63
Query: 124 KSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
S + +S +Q + +Q+ ++ ++++ AK +
Sbjct: 64 SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVE 113
Score = 34.2 bits (79), Expect = 0.013
Identities = 17/88 (19%), Positives = 38/88 (43%)
Query: 83 STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSME 142
S M+ ++ S+E+ + E+ + + + M+ + +E S+++T E
Sbjct: 2 SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61
Query: 143 QTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
+ S + S +Q S +Q+ AK
Sbjct: 62 EISSATKNIADSAQQAASFADQSTQLAK 89
Score = 33.4 bits (77), Expect = 0.029
Identities = 15/84 (17%), Positives = 32/84 (38%)
Query: 90 SFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFME 149
S M+ + S+E+ + E+ + M+ +E S+++T + E
Sbjct: 2 SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61
Query: 150 QTKSSMEQTKSSMEQTKLQAKGSK 173
+ S+ + S +Q A S
Sbjct: 62 EISSATKNIADSAQQAASFADQST 85
Score = 33.1 bits (76), Expect = 0.030
Identities = 10/117 (8%), Positives = 53/117 (45%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
E + + +E+ ++ + + ++E+ ++ + +E+ ++++
Sbjct: 193 AEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEI 252
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTK 117
++M +N + E+ +++ + +++ + E+ + ++ + +++ K + + K
Sbjct: 253 TTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVARYK 309
Score = 31.5 bits (72), Expect = 0.10
Identities = 26/196 (13%), Positives = 72/196 (36%), Gaps = 28/196 (14%)
Query: 1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
M+ +E +S+++T + E+ S+ + S +Q + +Q+ ++ +++++
Sbjct: 39 MDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKV 98
Query: 61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQT------------------ 102
+S + +R +E + E+ SF+E EQT
Sbjct: 99 IEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAG 158
Query: 103 ----------KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTK 152
+ E+++ + E +R + + +S E + +E+ ++
Sbjct: 159 RGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD 218
Query: 153 SSMEQTKSSMEQTKLQ 168
+ ++E+
Sbjct: 219 EKLNSIVGAVERINEM 234
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.80
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 16 EQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTK 75
EQ K E +S + E+ K +E+ + ++ +E+ K N+ + +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEE---WNQRQSEQVEKNK---INNRIADKA-- 144
Query: 76 RFMEQTKS 83
F +Q +
Sbjct: 145 -FYQQPDA 151
Score = 25.9 bits (56), Expect = 6.7
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 72 EQTKRFMEQTKSTMEQTKSFMEQTKNSME----QTKSSMEQTKSSM-EQTKRFMEQTKS 125
EQ KR E ++ + + E+ K +E + +E+ K + K F +Q +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.8
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 16/39 (41%)
Query: 54 KNSMEQTKSSMEQNKSSMEQTKRFMEQT------KSTME 86
K ++++ ++S+ K + + + K+TME
Sbjct: 19 KQALKKLQASL----------KLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 2.8
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 16/39 (41%)
Query: 96 KNSMEQTKSSMEQTKSSMEQTKRFMEQT------KSTME 128
K ++++ ++S+ K + + + K+TME
Sbjct: 19 KQALKKLQASL----------KLYADDSAPALAIKATME 47
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 27.4 bits (61), Expect = 3.2
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 44 EQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
EQ + +E+T SMEQ ++++QN + Q T ++ ++ +M
Sbjct: 83 EQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 142
Query: 104 SS 105
+S
Sbjct: 143 TS 144
Score = 26.6 bits (59), Expect = 4.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 100 EQTKSSMEQTKSSMEQ 115
EQ +S+E+T +SMEQ
Sbjct: 83 EQQAASLEETAASMEQ 98
Score = 26.6 bits (59), Expect = 4.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 149 EQTKSSMEQTKSSMEQ 164
EQ +S+E+T +SMEQ
Sbjct: 83 EQQAASLEETAASMEQ 98
Score = 26.6 bits (59), Expect = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 23 EQTESSMEQTKSSMEQ 38
EQ +S+E+T +SMEQ
Sbjct: 83 EQQAASLEETAASMEQ 98
Score = 26.2 bits (58), Expect = 7.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 93 EQTKNSMEQTKSSMEQTKSSMEQT 116
EQ S+E+T +SMEQ ++++Q
Sbjct: 83 EQQAASLEETAASMEQLTATVKQN 106
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 26.1 bits (58), Expect = 6.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 100 EQTKSSMEQTKSSMEQ 115
EQ +S+EQT +SMEQ
Sbjct: 3 EQQAASLEQTAASMEQ 18
Score = 26.1 bits (58), Expect = 6.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 149 EQTKSSMEQTKSSMEQ 164
EQ +S+EQT +SMEQ
Sbjct: 3 EQQAASLEQTAASMEQ 18
Score = 26.1 bits (58), Expect = 6.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 23 EQTESSMEQTKSSMEQ 38
EQ +S+EQT +SMEQ
Sbjct: 3 EQQAASLEQTAASMEQ 18
Score = 25.7 bits (57), Expect = 8.4
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 44 EQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTK 103
EQ + +EQT SMEQ ++++QN + Q T ++ ++ +M
Sbjct: 3 EQQAASLEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 62
Query: 104 SS 105
+S
Sbjct: 63 TS 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.292 0.0996 0.230
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,638,793
Number of extensions: 67454
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 152
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 54 (25.2 bits)