RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5171
         (180 letters)



>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
           tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 184

 Score = 27.9 bits (62), Expect = 0.49
 Identities = 9/51 (17%), Positives = 24/51 (47%)

Query: 124 KSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKL 174
           K  + + + ++ +     +     + Q +  +E + S  ++ KLQ + +KL
Sbjct: 131 KVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKL 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.292   0.0996    0.230 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,962
Number of extensions: 11134
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 47
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 50 (23.4 bits)