BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5177
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
           Pv. Campestris Str. Atcc 33913
 pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
           Pv. Campestris Str. Atcc 33913
          Length = 330

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 77  GAPEGSLGFANKSGWSSTEIFFETIKHI 104
           G P+GS  +AN + W ST++F E++ +I
Sbjct: 278 GTPDGSKPYANATNWISTKVFPESLGYI 305


>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
 pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
          Length = 330

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 77  GAPEGSLGFANKSGWSSTEIFFETIKHI 104
           G P+GS  +AN + W ST++F E++ +I
Sbjct: 278 GTPDGSKPYANATNWISTKVFPESLGYI 305


>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
 pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
          Length = 330

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 77  GAPEGSLGFANKSGWSSTEIFFETIKHI 104
           G P+GS  +AN + W ST++F E++ +I
Sbjct: 278 GTPDGSKPYANATNWISTKVFPESLGYI 305


>pdb|1ZGD|A Chain A, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
           Resolution
 pdb|1ZGD|B Chain B, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
           Resolution
          Length = 312

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 100 TIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPP 147
           ++K ++N +  +   PA+  ++ +   Q  +  E+C A GI L  F P
Sbjct: 169 SVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSP 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,414,033
Number of Sequences: 62578
Number of extensions: 245405
Number of successful extensions: 618
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 7
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)