BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5177
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain OS=Homo sapiens GN=POGZ
PE=1 SV=2
Length = 1410
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 52 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 111
I A G +P VF R M P+ L A +SG+S EI + + A
Sbjct: 1163 ILADGTVLP-TLVFYRGQMDQP--ANMPDSILLEAKESGYSDDEIMELWSTRVWQKHTAC 1219
Query: 112 KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171
+ + +++MD H TH S E + AS P + ++QPLDV + KN L
Sbjct: 1220 QRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFL--- 1276
Query: 172 FKKW 175
KKW
Sbjct: 1277 HKKW 1280
>sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain OS=Mus musculus GN=Pogz
PE=1 SV=2
Length = 1409
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 52 IRASGEAIPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKAS 111
I A G +P VF R + P+ L A SG+S EI + + A
Sbjct: 1159 ILADGTVLP-TLVFFR--GQANRFANVPDSILLEAKDSGYSDDEIMELWSTRVWKKHTAC 1215
Query: 112 KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171
+ + ++++MD H TH S E + AS P + ++QPLDV + KN L
Sbjct: 1216 QHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFL--- 1272
Query: 172 FKKW 175
KKW
Sbjct: 1273 HKKW 1276
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain OS=Homo sapiens GN=POGK
PE=1 SV=2
Length = 609
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 16 PDSLVPPPKVVAKKRTKK--LGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDE 73
P L P +V + +K L + E+ ++ M+G++ A G +PP + ++
Sbjct: 367 PICLEVPSRVTVDNQGEKPVLVKTPGREKLKITAMLGVL-ADGRKLPPYIILRGTYIPPG 425
Query: 74 FLLGAPEGSLGFANKSGWSSTEIFFETIKHI-QNQIKASKENPALILMDNHETHQSMEAI 132
P G ++ GW + ++ + ++ + + + A + +++++ H +
Sbjct: 426 KF---PSGMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVK 482
Query: 133 EYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
+ ++ P T +LQ LDV V+ P + ++A + W
Sbjct: 483 NSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNW 525
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain OS=Mus musculus GN=Pogk
PE=2 SV=2
Length = 607
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 16 PDSLVPPPKVVAKKRTKK--LGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDE 73
P L P +V + +K L + E+ + M+G++ A G +PP + ++
Sbjct: 367 PICLEVPSRVTVDNQGEKPILVKTPGREKLRITAMLGVL-ADGRKLPPYIILRGTYIPPG 425
Query: 74 FLLGAPEGSLGFANKSGWSSTEIFFETIKHI-QNQIKASKENPALILMDNHETHQSMEAI 132
P G ++ GW + ++ + ++ + + + A +++++ H +
Sbjct: 426 KF---PSGMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPRQRGMLILNGFRCHATDSVK 482
Query: 133 EYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
++ P T +LQ LDV V+ P + ++A + W
Sbjct: 483 SSMENMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNW 525
>sp|B1VG41|SYE_CORU7 Glutamate--tRNA ligase OS=Corynebacterium urealyticum (strain ATCC
43042 / DSM 7109) GN=gltX PE=3 SV=1
Length = 499
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 79 PEGSLGFANKSGWS--STEIFFETIKHIQN-QIKASKENPALILMDNHETHQSMEAIEYC 135
PEG L + + GWS + E F + I+N I K NPA H+ MEAI
Sbjct: 275 PEGMLNYLSLLGWSLSADEDIFTMAQLIENFDIADVKPNPARF------DHKKMEAI--- 325
Query: 136 RASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMA 188
D ++ LD+A F+ FK W +D P + A
Sbjct: 326 -------------NADHIRMLDLADFTQRLRTYLEEFKGWPADYPADKFAFAA 365
>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mis4 PE=1 SV=2
Length = 1587
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 90 GWSSTEIFFETIKHIQ-NQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPH 148
G + + F TI ++ N IK ++E L+ + H H+S+ Y +++ L F
Sbjct: 1337 GLVNPRMCFSTIIALESNAIKETREVAILLHTELHRRHESLIDGLYAQSAD---LIFSLQ 1393
Query: 149 KTDELQPLDVAVFSPFKN 166
KT+E Q + FSPF++
Sbjct: 1394 KTEEYQTFKLGEFSPFQS 1411
>sp|Q0VBL1|TIGD2_MOUSE Tigger transposable element-derived protein 2 OS=Mus musculus
GN=Tigd2 PE=2 SV=1
Length = 525
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 85 FANKSGW---SSTEIFFET--IKHIQNQIKASK-ENPALILMDNHETHQSMEAIEYCRAS 138
F+ KS W S + +FE + +Q +K+ A++L+D H + E +
Sbjct: 250 FSQKSAWIEPSVLKQWFEKCFVPQVQKHLKSKGLREKAVLLLDFPAAHPAEELLS-SDDG 308
Query: 139 GITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSD---NPGSSWPLMAMWPKISE 195
I + PP+ T +QP+ V + K +AG + D +P + W + + I E
Sbjct: 309 RIIVKYLPPNVTSLIQPMSQGVLTTVKRYYRAGLIQKYMDEGNDPKTFWKNLTVLDAIYE 368
Query: 196 SSR 198
+SR
Sbjct: 369 ASR 371
>sp|Q17RP2|TIGD6_HUMAN Tigger transposable element-derived protein 6 OS=Homo sapiens
GN=TIGD6 PE=2 SV=2
Length = 521
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 86 ANKSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTF 145
AN+ W + ++F E + + ++K + E L+L+DN H + +E I +
Sbjct: 250 ANQWAWMTRDLFNEWLMQVDARMKRA-ERRILLLIDNCSAHNMLPHLER-----IQVGYL 303
Query: 146 PPHKTDELQPLDVAVFSPFK 165
P + T LQPL++ + K
Sbjct: 304 PSNCTAVLQPLNLGIIHTMK 323
>sp|Q9Y4A0|JERKL_HUMAN Jerky protein homolog-like OS=Homo sapiens GN=JRKL PE=2 SV=2
Length = 524
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 85 FANKSGWSSTEIF---FETI--KHIQNQIKASK-ENPALILMDNHETHQSMEAIEYCRAS 138
F+ K W IF F+ I ++ +++ + A++L+DN TH + E +
Sbjct: 250 FSQKGAWMDLSIFRQWFDKIFVPQVREYLRSKGLQEKAVLLLDNSPTHPN-ENVLRSDDG 308
Query: 139 GITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKIS 194
I PP+ +QP D V + K +AG +N L + W K++
Sbjct: 309 QIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGL---LQNNLEEGNDLKSFWKKLT 361
>sp|B2RRL2|JERKL_MOUSE Jerky protein homolog-like OS=Mus musculus GN=Jrkl PE=2 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 85 FANKSGWSSTEIF---FETI--KHIQNQIKASK-ENPALILMDNHETHQSMEAIEYCRAS 138
F+ K W IF F+ I ++ +++ + A++L+DN TH + E +
Sbjct: 250 FSQKGAWMDLSIFRQWFDKIFVPQVREYLRSKGLQEKAVLLLDNSPTHPN-ENVLRSDDG 308
Query: 139 GITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTSDNPGSSWPLMAMWPKIS 194
I PP+ +QPL V + K +AG +N L + W K++
Sbjct: 309 QIFAKYLPPNVASLIQPLGQGVIAAMKRNYRAGL---LHNNLEEGNDLKSFWKKLT 361
>sp|B9DTE3|PNP_STRU0 Polyribonucleotide nucleotidyltransferase OS=Streptococcus uberis
(strain ATCC BAA-854 / 0140J) GN=pnp PE=3 SV=1
Length = 732
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 88 KSGWSSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPP 147
K+ ++TE ET+K A EN A I+ D E + ME E R +
Sbjct: 262 KAREAATEAVKETVKAEYEAKFAEDENLATIMRDVAEILEQMEHAEVRRLITEDKVRPDG 321
Query: 148 HKTDELQPLDVAV 160
K DE++PLD +
Sbjct: 322 RKVDEIRPLDAQI 334
>sp|A5IZH1|SYY_MYCAP Tyrosine--tRNA ligase OS=Mycoplasma agalactiae (strain PG2) GN=tyrS
PE=3 SV=1
Length = 411
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 99 ETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASG 139
E++ +++IKA E+ L ++DN++ ++ M +E+ R G
Sbjct: 91 ESVNKNKSKIKAQLESFGLEVIDNYDFYKDMNVLEFLRNVG 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,197,741
Number of Sequences: 539616
Number of extensions: 3149146
Number of successful extensions: 6715
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6711
Number of HSP's gapped (non-prelim): 15
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)