Query psy5177
Match_columns 213
No_of_seqs 160 out of 1294
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:18:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f7t_A MOS1 transposase; RNAse 99.2 3.5E-11 1.2E-15 96.2 7.4 136 10-169 31-178 (227)
2 3f2k_A Histone-lysine N-methyl 99.1 2.4E-10 8.1E-15 91.4 7.2 135 10-168 31-176 (226)
3 3hot_A Transposable element ma 99.0 3.6E-10 1.2E-14 95.2 8.0 135 10-168 149-295 (345)
4 1cxq_A Avian sarcoma virus int 91.5 0.95 3.2E-05 32.8 8.0 78 92-178 49-126 (162)
5 3kks_A Integrase, IN; beta-str 88.3 1.6 5.4E-05 30.8 6.8 57 115-176 54-110 (152)
6 1c0m_A Protein (integrase); HI 85.9 3.4 0.00012 32.0 8.0 74 92-174 48-121 (238)
7 2x78_A Integrase; viral protei 85.0 4.7 0.00016 29.9 8.2 60 113-177 68-127 (200)
8 3hph_A Integrase, IN; protein- 83.8 2.1 7.3E-05 32.5 5.8 58 115-177 112-169 (219)
9 3f9k_A Integrase; protein-prot 78.8 9.7 0.00033 28.6 8.0 74 92-175 93-166 (210)
10 1c6v_A Protein (SIV integrase) 77.1 2.8 9.6E-05 29.8 4.2 54 115-169 61-114 (164)
11 3l3u_A POL polyprotein; DNA in 73.9 8.5 0.00029 27.4 6.2 71 93-173 44-114 (163)
12 3oym_A PFV integrase, P42IN; p 69.3 11 0.00038 31.2 6.6 60 113-177 180-239 (395)
13 3av9_A Integrase, IN; protein- 62.7 3.4 0.00012 30.5 1.9 53 116-173 82-134 (183)
14 1ex4_A Integrase; SH3-like dom 49.9 22 0.00075 27.2 4.8 51 115-170 61-111 (239)
15 1i1q_B Anthranilate synthase c 49.5 18 0.00062 26.8 4.1 32 116-148 2-33 (192)
16 1k6y_A Integrase; HIV-1, domai 48.9 21 0.00071 26.6 4.4 52 116-172 111-162 (212)
17 3l8u_A SMU.1707C, putative rRN 37.2 56 0.0019 24.2 5.1 40 112-151 14-54 (182)
18 3tos_A CALS11; methyltransfera 31.2 24 0.00082 28.0 2.2 53 95-151 194-250 (257)
19 2lnd_A De novo designed protei 31.1 1.1E+02 0.0037 19.7 5.1 44 101-145 40-83 (112)
20 2jtq_A Phage shock protein E; 26.9 94 0.0032 19.1 4.3 43 112-157 40-83 (85)
21 3v7e_A Ribosome-associated pro 24.6 91 0.0031 19.7 3.8 32 115-146 29-60 (82)
22 3hh1_A Tetrapyrrole methylase 24.0 1.7E+02 0.0056 19.6 5.5 35 113-147 79-116 (117)
23 3rht_A (gatase1)-like protein; 23.2 47 0.0016 26.3 2.6 64 115-178 5-78 (259)
24 1atz_A VON willebrand factor; 21.5 2.1E+02 0.007 20.4 5.8 61 89-149 81-145 (189)
25 3iz5_f 60S ribosomal protein L 20.5 1.2E+02 0.004 20.6 3.9 35 113-147 42-76 (112)
No 1
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=99.18 E-value=3.5e-11 Score=96.15 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=89.4
Q ss_pred CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177 10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL 83 (213)
Q Consensus 10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~ 83 (213)
..+|+..||+++. .+.+..+|.+............++.+..|++++|.. .+.++
T Consensus 31 ~~~Ivf~DE~~f~~~~~~~~~~W~~~ge~~~~~~~~~~~~~~vmv~g~~~~~G~~-~~~~~------------------- 90 (227)
T 2f7t_A 31 LHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVI-YYELL------------------- 90 (227)
T ss_dssp GGGEEEEEEEEEEBCCCC-----------------------EEEEEEEEETTEEE-EEEEC-------------------
T ss_pred hhheEeccCCEEEecCccccccccCCCCCCcceeccccccCeeEEEEEEecCceE-EeEec-------------------
Confidence 4679999998752 455666776443222222223567888888888732 22221
Q ss_pred eeecCCCCccHHHHHHHHHHHHhhhhcC-----CCCC-eEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177 84 GFANKSGWSSTEIFFETIKHIQNQIKAS-----KENP-ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD 157 (213)
Q Consensus 84 ~~~s~~gw~~~~~f~~wl~~f~~~~~~~-----~~~~-~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD 157 (213)
.+.|-+|++.+.++|+.+.+.+.+. .++. +++++||++.|.+..+.+++.+.++.++++||++.. |.|+|
T Consensus 91 ---~~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~~H~~~~~~~~~~~~~~~~~~~p~ysPd-lnpie 166 (227)
T 2f7t_A 91 ---KPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSD 166 (227)
T ss_dssp ---CTTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCGGGGSHHHHHHHHHHTCEECCCCTTCGG-GCHHH
T ss_pred ---CCCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCchhhhHHHHHHHHHhCcccccCCCCCCC-cCccc
Confidence 2357899999999998777765421 1233 899999999999999999999999999999999988 67999
Q ss_pred ccccHHHHHHHH
Q psy5177 158 VAVFSPFKNRLK 169 (213)
Q Consensus 158 ~~v~~~lK~~~~ 169 (213)
..+++.+|..++
T Consensus 167 ~~~w~~lk~~l~ 178 (227)
T 2f7t_A 167 YHLFASMGHALA 178 (227)
T ss_dssp HTHHHHHHHHHH
T ss_pred chhhHHHHHHHh
Confidence 778888887654
No 2
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=99.07 E-value=2.4e-10 Score=91.42 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=88.4
Q ss_pred CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177 10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL 83 (213)
Q Consensus 10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~ 83 (213)
.++|...||+.+. .+.+..+|..............+++|..|.+++|.. ++.+
T Consensus 31 ~~~iv~~DE~~~~~~n~~~~~~W~~~ge~~~~~~~~~~~~~~vmv~~~~s~~G~~-~~~~-------------------- 89 (226)
T 3f2k_A 31 LDRIVTCDEKWILYDNRRRSAQWLDQEEAPKHFPKPILHPKKVMVTIWWSAAGLI-HYSF-------------------- 89 (226)
T ss_dssp GGGEEEEEEEEEESBCC---------------------CCCEEEEEEEEETTEEE-EEEE--------------------
T ss_pred hHhEEEeccceEEEecccceeeecCCCCCCccccccccCCcceEEEEEeecCCcE-EEEE--------------------
Confidence 3678899997652 345556665433222222334588999999999843 1111
Q ss_pred eeecCCCCccHHHHHHHHHHHHhh---hhcC--CCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccc
Q psy5177 84 GFANKSGWSSTEIFFETIKHIQNQ---IKAS--KENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDV 158 (213)
Q Consensus 84 ~~~s~~gw~~~~~f~~wl~~f~~~---~~~~--~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~ 158 (213)
..+.|-||++.+.+.|+.+.+. ..+. ..+.++|+.||++.|.+..+.+++.+.++.+++.||++.. |.|+|.
T Consensus 90 --l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~~l~~~~~~~~~~P~ySPd-lnpie~ 166 (226)
T 3f2k_A 90 --LNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPD-LLPTNY 166 (226)
T ss_dssp --CCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHHHHHHHTCEECCCCTTCGG-GCHHHH
T ss_pred --ecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHHHHHhhcceeecCCCCCCC-cchHHH
Confidence 2334679999999998765332 2221 2456899999999999999999999999999999999998 679997
Q ss_pred cccHHHHHHH
Q psy5177 159 AVFSPFKNRL 168 (213)
Q Consensus 159 ~v~~~lK~~~ 168 (213)
.+++.+|..+
T Consensus 167 ~~w~~lk~~l 176 (226)
T 3f2k_A 167 HVFKHLNNFL 176 (226)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888888765
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.05 E-value=3.6e-10 Score=95.24 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=100.8
Q ss_pred CCCeecCCCCCCC------CceEEecccccccccccCCCCceEEEEeeeccCCcccCCeEEecccccccccccCCCCCce
Q psy5177 10 YTDYWNPDSLVPP------PKVVAKKRTKKLGQAASAERGELVTMIGIIRASGEAIPPVFVFPRVFMKDEFLLGAPEGSL 83 (213)
Q Consensus 10 ~~~I~N~DET~~~------~~~~~~~g~k~v~~~~~~~~~~~~Tvl~~~~a~G~~lpP~~I~~~~~~~~~~~~~~~~~~~ 83 (213)
..+|+..||+++. .+.+..+|..............++.+..|++.+|. +.+.++
T Consensus 149 ~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~v~~~~~~~g~-~~~~~~------------------- 208 (345)
T 3hot_A 149 LHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGV-IYYELL------------------- 208 (345)
T ss_dssp GGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTTCCEEEEEEEEESSSE-EEEEEE-------------------
T ss_pred HHhhhcccceeEEecCccceeeeccCCCCCCCCcCccCcCCcEEEEEEEcccCc-eeeEec-------------------
Confidence 4689999998653 55677777655433333333458889999988882 222221
Q ss_pred eeecCCCCccHHHHHHHHHHHHhhhhcC-C-----CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCccc
Q psy5177 84 GFANKSGWSSTEIFFETIKHIQNQIKAS-K-----ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLD 157 (213)
Q Consensus 84 ~~~s~~gw~~~~~f~~wl~~f~~~~~~~-~-----~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD 157 (213)
...|-+|.+.+.++|+.+.+.+... + +++++|+.||.+.|.+..+.+++.++++.+++.||++.. +.|+|
T Consensus 209 ---~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~~~~~~~~l~~~~~~~~~~p~~spd-lnpie 284 (345)
T 3hot_A 209 ---KPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPD-LAPSD 284 (345)
T ss_dssp ---CSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTTSHHHHHHHHHTTCEECCCCTTCGG-GCHHH
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccccHHHHHHHHHcCcEeccCCCCCCC-ccccc
Confidence 2346799999999998776655331 1 457899999999999999999999999999999999987 56999
Q ss_pred ccccHHHHHHH
Q psy5177 158 VAVFSPFKNRL 168 (213)
Q Consensus 158 ~~v~~~lK~~~ 168 (213)
..+|+.+|..+
T Consensus 285 ~~~~~~lk~~~ 295 (345)
T 3hot_A 285 YHLFASMGHAL 295 (345)
T ss_dssp HTHHHHHHHHH
T ss_pred chhhHHHHHHh
Confidence 88889888654
No 4
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=91.47 E-value=0.95 Score=32.79 Aligned_cols=78 Identities=17% Similarity=0.087 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177 92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171 (213)
Q Consensus 92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~ 171 (213)
.+.+...+.|+...... +.|..+..|+-+...+..+.++|++.||...+.+|++ |-+.|....+-..++++
T Consensus 49 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~tlk~~ 119 (162)
T 1cxq_A 49 VTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGN-----SQGQAMVERANRLLKDK 119 (162)
T ss_dssp CCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC---------CHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhhHHHHHHHHHCCCeEeeCCCCC-----CccCCEEehHHHHHHHH
Confidence 55666666665533322 4567999999999999999999999999999999987 55666666666666666
Q ss_pred HHHHHhc
Q psy5177 172 FKKWTSD 178 (213)
Q Consensus 172 ~~~~~~~ 178 (213)
+.....+
T Consensus 120 ~~~~~~~ 126 (162)
T 1cxq_A 120 IRVLAEG 126 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHcCc
Confidence 5555443
No 5
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=88.26 E-value=1.6 Score=30.78 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=45.8
Q ss_pred CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHH
Q psy5177 115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWT 176 (213)
Q Consensus 115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~ 176 (213)
|..+..|+-+...+..+.++|+..||...+.+|+. |-+.|....+-..+++.+....
T Consensus 54 p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~~lk~~~~~~~ 110 (152)
T 3kks_A 54 VLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYN-----PQSQGVVERAHRDLKDRLAAYQ 110 (152)
T ss_dssp CSEEEECSCHHHHSHHHHHHHHHTTCEEEESSCSC-----HHHHHHHHHHHHHHHHHHHHHG
T ss_pred CcEEecCCchHhhHHHHHHHHHHcCCeecccCCcC-----CCccchhHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999886 6666766666666666555444
No 6
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=85.87 E-value=3.4 Score=32.04 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177 92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171 (213)
Q Consensus 92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~ 171 (213)
.+.+...+-|+..+... +.|..+..|+-+...+..+.++|++.||...+.+|+. |-+.|....+-..+++.
T Consensus 48 ~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s~~~~~~~~~~gI~~~~~~p~~-----p~~ng~vEr~~~tlk~~ 118 (238)
T 1c0m_A 48 VTSVAVQHHWATAIAVL----GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGN-----SQGQAMVERANRLLKDR 118 (238)
T ss_dssp CCHHHHHHHHHHHHHHH----CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECCSSS-----STTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCcEEEECCCCccccHHHHHHHHHCCCEEEecCCCC-----cccccHHHHHHHHHHHH
Confidence 55666555555433322 3467999999999999999999999999999999987 55666555555555544
Q ss_pred HHH
Q psy5177 172 FKK 174 (213)
Q Consensus 172 ~~~ 174 (213)
+..
T Consensus 119 ~~~ 121 (238)
T 1c0m_A 119 IRV 121 (238)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 7
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=84.97 E-value=4.7 Score=29.93 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=40.9
Q ss_pred CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHHh
Q psy5177 113 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTS 177 (213)
Q Consensus 113 ~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~~ 177 (213)
+.|..+..|+-+...+..+.++|+..||...+.+|++ |-+.|....+-..+++.+...+.
T Consensus 68 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~~l~~~~~~~~~ 127 (200)
T 2x78_A 68 AIPRVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYH-----PQSGSKVERKNSDIKRLLTKLLV 127 (200)
T ss_dssp CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECC------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCcceehHHHHHHHHHcCceEeECCCCC-----CCccCHhHhhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999997 44555555555555554444443
No 8
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=83.78 E-value=2.1 Score=32.53 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=46.6
Q ss_pred CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHHh
Q psy5177 115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTS 177 (213)
Q Consensus 115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~~ 177 (213)
|..+..|+-+...+..+.++|+..||...+.+|+. |-+.|....+-..++..+.....
T Consensus 112 p~~i~sDnG~~F~s~~~~~~~~~~gi~~~~s~p~~-----p~~nG~~Er~~~~lk~~l~~~~~ 169 (219)
T 3hph_A 112 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWN-----PQSQALVERTHQTLKNTLEKLIP 169 (219)
T ss_dssp CCEEEECCCHHHHSHHHHHHHHHHTCEEEESCCCC-----HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CcEEEeCCCchhhhHHHHHHHHHcCCeEeECCCCC-----CcccChhhhHHHHHHHHHHHHhc
Confidence 77999999999999999999999999999998886 66777766666666665554443
No 9
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=78.83 E-value=9.7 Score=28.58 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHH
Q psy5177 92 SSTEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAG 171 (213)
Q Consensus 92 ~~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~ 171 (213)
.+.......+..+.... +-|. +..|+-+...+..+.++|+..||...+.+|+. |-+.|....+-..+++.
T Consensus 93 ~~~~~~~~~l~~~~~~~----g~~~-i~sDnG~~F~s~~~~~~~~~~gi~~~~s~~~~-----p~~nG~~Er~n~~lk~~ 162 (210)
T 3f9k_A 93 ESGRQTALFLLKLASRW----PITH-LHTDNGANFTSQEVKMVAWWIGIEQSFGVPYN-----PQSQGVVEAMNHHLKNQ 162 (210)
T ss_dssp CCHHHHHHHHHHHHTTS----CCSE-EEECCCTTTSSHHHHHHHHHHTCEEEESSCCC-----TTCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHc----CCCE-EEeCCCchhhHHHHHHHHHHCCCceeeCCCcC-----CCcccHHHHHHHHHHHH
Confidence 35555555554433322 3354 89999999999999999999999999999987 55666655555555554
Q ss_pred HHHH
Q psy5177 172 FKKW 175 (213)
Q Consensus 172 ~~~~ 175 (213)
+...
T Consensus 163 l~~~ 166 (210)
T 3f9k_A 163 ISRI 166 (210)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 10
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=77.14 E-value=2.8 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=36.1
Q ss_pred CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHH
Q psy5177 115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLK 169 (213)
Q Consensus 115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~ 169 (213)
+..+..|+-+.+.+..+.++|+..||...+.+|++...- ..-...++.+|..++
T Consensus 61 ~~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~n-g~vEr~~~~lk~~l~ 114 (164)
T 1c6v_A 61 ITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQ-GVVEAMNHHLKNQID 114 (164)
T ss_dssp CCEEECCCCSSTTSSHHHHHHHHHTCEEECC------------CCTTTHHHHHHH
T ss_pred CCEEEeCCchhhhhHHHHHHHHHcCCeEeECCCCCCccc-ceehHHHHHHHHHHH
Confidence 578999999999999999999999999999999885422 222245677776544
No 11
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=73.87 E-value=8.5 Score=27.39 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHH
Q psy5177 93 STEIFFETIKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGF 172 (213)
Q Consensus 93 ~~~~f~~wl~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~ 172 (213)
+.......+..+.... + +..+..|+-+...+..+.++|++.||...+.+|+. |-+.|....+-..+++.+
T Consensus 44 ~~~~~~~~l~~~~~~~----~-~~~i~sD~G~~f~s~~~~~~~~~~gi~~~~~~p~~-----p~~ng~~Er~~~~lk~~~ 113 (163)
T 3l3u_A 44 TGQETAYFLLKLAGRW----P-VKTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYN-----PQSQGVIESMNKELKKII 113 (163)
T ss_dssp CHHHHHHHHHHHHHHS----C-CCEEEECCCGGGGSHHHHHHHHHHTCEEEETCCCC-----CCSTTCCSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHc----C-CcEEeecChHhhhhHHHHHHHHHCCceeeeCCCCC-----cccccHHHHHHHHHHHHH
Confidence 4445555544433222 1 25789999999999999999999999999999887 445555444444444443
Q ss_pred H
Q psy5177 173 K 173 (213)
Q Consensus 173 ~ 173 (213)
.
T Consensus 114 ~ 114 (163)
T 3l3u_A 114 G 114 (163)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=69.35 E-value=11 Score=31.21 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHHHHHh
Q psy5177 113 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKWTS 177 (213)
Q Consensus 113 ~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~~~~~ 177 (213)
+.|..++.|+-+...+..+.++|++.||...+.+|+. |-+.|....+-..++..+...+.
T Consensus 180 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~~~~-----p~~nG~~Er~n~~lk~~l~~~~~ 239 (395)
T 3oym_A 180 AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYH-----PQSSGKVERKHSDIKRLLTKLLV 239 (395)
T ss_dssp CCCSEEEECSCHHHHSHHHHHHHHHTTCEEEECCTTC-----GGGGHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEeCCCCceecHHHHHHHHHcCCceeecCCcC-----CcccChhhhHHHHHHHHHHHHhh
Confidence 6678999999999999999999999999999999987 55556555555555554444433
No 13
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=62.74 E-value=3.4 Score=30.49 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=41.2
Q ss_pred eEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHHH
Q psy5177 116 ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFK 173 (213)
Q Consensus 116 ~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~~ 173 (213)
..+..|+-+...+..+.++|++.||...+.+|++ |-+.|....+-..+++.+.
T Consensus 82 ~~i~sDnG~ef~s~~~~~~~~~~gI~~~~s~p~~-----P~~nG~vEr~~~tlk~~l~ 134 (183)
T 3av9_A 82 KTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYN-----PQSQGVIESMNKELKKIIG 134 (183)
T ss_dssp CEEECSSHHHHHCHHHHHHHHHHTCEEECCCCSS-----HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCchhcchHHHHHHHHHCCCEEeecCCCC-----CcchhHHHHHHHHHHHHHH
Confidence 6889999999889999999999999999999987 5566655555444444443
No 14
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=49.89 E-value=22 Score=27.20 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=37.0
Q ss_pred CeEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHH
Q psy5177 115 PALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKA 170 (213)
Q Consensus 115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~ 170 (213)
+..+..|+-+...+..+.++|+..||...+-+|+. |-+.|....+-..+++
T Consensus 61 ~~~i~sDnG~eF~s~~~~~~~~~~gI~~~~s~p~~-----P~~NG~vEr~n~tlk~ 111 (239)
T 1ex4_A 61 VKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYN-----PQSQGVVESMNKELKK 111 (239)
T ss_dssp CCEEEECCCHHHHCHHHHHHHTTTTCEECCCCC--------CSSHHHHHHHHHHHH
T ss_pred CcEEEecCcHHHHHHHHHHHHHHCCCeEEECCCCC-----cccchHHHHHHHHHHH
Confidence 46899999999889999999999999999999887 4455554444444433
No 15
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=49.55 E-value=18 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=17.2
Q ss_pred eEEeccCCCcccchHHHHHHHHcCcEEEeeCCC
Q psy5177 116 ALILMDNHETHQSMEAIEYCRASGITLLTFPPH 148 (213)
Q Consensus 116 ~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~ 148 (213)
.++|+|+..+ .+..+.+.+++.|+.+..+|..
T Consensus 2 ~i~iiDn~~s-~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 2 DILLLDNIDS-FTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp EEEEEECSCS-SHHHHHHHHHHTTCEEEEEETT
T ss_pred cEEEEECCcc-HHHHHHHHHHHCCCeEEEEECC
Confidence 3566665555 3444555555555555555544
No 16
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=48.89 E-value=21 Score=26.59 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=34.3
Q ss_pred eEEeccCCCcccchHHHHHHHHcCcEEEeeCCCCCCCcCcccccccHHHHHHHHHHH
Q psy5177 116 ALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGF 172 (213)
Q Consensus 116 ~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~t~~lQPlD~~v~~~lK~~~~~~~ 172 (213)
..+..|+-+...+..+.++|++.||...+.+|+. |-+.|....+-..+++.+
T Consensus 111 ~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~p~~-----p~~nG~~Er~~~~lk~~l 162 (212)
T 1k6y_A 111 KTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYN-----PQSQGVIESMNKELKKII 162 (212)
T ss_dssp CEEECCCSTTTTSHHHHHHHHHHTCEECCC--------------HHHHHHHHHHHHH
T ss_pred eEEEcCCCcccccHHHHHHHHHCCCeeeECCCCC-----CcchhHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999887 445555544444444443
No 17
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=37.21 E-value=56 Score=24.24 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCCCeEEeccCCCccc-chHHHHHHHHcCcEEEeeCCCCCC
Q psy5177 112 KENPALILMDNHETHQ-SMEAIEYCRASGITLLTFPPHKTD 151 (213)
Q Consensus 112 ~~~~~lLllD~~~~H~-~~~~~~~~~~~~i~l~~lP~~~t~ 151 (213)
...+++|++|+-.-.- ...+...|...|+..+++++++..
T Consensus 14 ~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~ 54 (182)
T 3l8u_A 14 TLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFP 54 (182)
T ss_dssp -CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSC
T ss_pred CCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCC
Confidence 4567888999866544 456788889999999999998644
No 18
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=31.19 E-value=24 Score=27.98 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEeccCCC----cccchHHHHHHHHcCcEEEeeCCCCCC
Q psy5177 95 EIFFETIKHIQNQIKASKENPALILMDNHE----THQSMEAIEYCRASGITLLTFPPHKTD 151 (213)
Q Consensus 95 ~~f~~wl~~f~~~~~~~~~~~~lLllD~~~----~H~~~~~~~~~~~~~i~l~~lP~~~t~ 151 (213)
+-..+.++.+.|.+++ .-++++|++. ......+.+++.++++.+..+|-+.+.
T Consensus 194 ~~t~~~le~~~p~l~~----GGvIv~DD~~~~~w~G~~~A~~ef~~~~~~~i~~~p~~~~~ 250 (257)
T 3tos_A 194 EPTKAVLEAIRPYLTK----GSIVAFDELDNPKWPGENIAMRKVLGLDHAPLRLLPGRPAP 250 (257)
T ss_dssp HHHHHHHHHHGGGEEE----EEEEEESSTTCTTCTHHHHHHHHHTCTTSSCCEECTTCSCC
T ss_pred chHHHHHHHHHHHhCC----CcEEEEcCCCCCCChHHHHHHHHHHhhCCCeEEEccCCCCC
Confidence 3455667778887753 2588888873 245566777778899999999877643
No 19
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.12 E-value=1.1e+02 Score=19.74 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=35.0
Q ss_pred HHHHHhhhhcCCCCCeEEeccCCCcccchHHHHHHHHcCcEEEee
Q psy5177 101 IKHIQNQIKASKENPALILMDNHETHQSMEAIEYCRASGITLLTF 145 (213)
Q Consensus 101 l~~f~~~~~~~~~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~l 145 (213)
++..++.++. .++|.++++.+.+-.-..++...++..|+..-.+
T Consensus 40 irdiiksmkd-ngkplvvfvngasqndvnefqneakkegvsydvl 83 (112)
T 2lnd_A 40 IRDIIKSMKD-NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL 83 (112)
T ss_dssp HHHHHHHHTT-CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHh-cCCeEEEEecCcccccHHHHHHHHHhcCcchhhh
Confidence 4445555554 5789999999999988889999999999877666
No 20
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.94 E-value=94 Score=19.11 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=28.5
Q ss_pred CCCCeEEeccCCCcccchHHHHHHHHcCcE-EEeeCCCCCCCcCccc
Q psy5177 112 KENPALILMDNHETHQSMEAIEYCRASGIT-LLTFPPHKTDELQPLD 157 (213)
Q Consensus 112 ~~~~~lLllD~~~~H~~~~~~~~~~~~~i~-l~~lP~~~t~~lQPlD 157 (213)
.++++++++++ +..+......+++.|.. +..+ .+...+.+|+.
T Consensus 40 ~~~~ivv~C~~--g~rs~~aa~~L~~~G~~~v~~l-GG~~~w~~~~~ 83 (85)
T 2jtq_A 40 KNDTVKVYCNA--GRQSGQAKEILSEMGYTHVENA-GGLKDIAMPKV 83 (85)
T ss_dssp TTSEEEEEESS--SHHHHHHHHHHHHTTCSSEEEE-EETTTCCSCEE
T ss_pred CCCcEEEEcCC--CchHHHHHHHHHHcCCCCEEec-cCHHHHhcccc
Confidence 46777777764 45666777777777763 5555 77766666654
No 21
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=24.60 E-value=91 Score=19.68 Aligned_cols=32 Identities=6% Similarity=0.227 Sum_probs=25.4
Q ss_pred CeEEeccCCCcccchHHHHHHHHcCcEEEeeC
Q psy5177 115 PALILMDNHETHQSMEAIEYCRASGITLLTFP 146 (213)
Q Consensus 115 ~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP 146 (213)
..++|-.+.+.+....+..+|++.||.+.+++
T Consensus 29 klViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 29 KEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHTCCEEEES
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555566666778889999999999999987
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=23.98 E-value=1.7e+02 Score=19.56 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=26.5
Q ss_pred CCCeEEecc-CCCcccc--hHHHHHHHHcCcEEEeeCC
Q psy5177 113 ENPALILMD-NHETHQS--MEAIEYCRASGITLLTFPP 147 (213)
Q Consensus 113 ~~~~lLllD-~~~~H~~--~~~~~~~~~~~i~l~~lP~ 147 (213)
++.+.++.| |.++-.+ .++.+.|++.+|.+..+|.
T Consensus 79 G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPG 116 (117)
T 3hh1_A 79 GSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPG 116 (117)
T ss_dssp TCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC-
T ss_pred CCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCC
Confidence 677888887 8776653 4667777889999998884
No 23
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=23.19 E-value=47 Score=26.26 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=42.5
Q ss_pred CeEEeccCCCcccc-hHHHHHHHHcCcEEEeeCCCCCC----CcCcccccccH-----HHHHHHHHHHHHHHhc
Q psy5177 115 PALILMDNHETHQS-MEAIEYCRASGITLLTFPPHKTD----ELQPLDVAVFS-----PFKNRLKAGFKKWTSD 178 (213)
Q Consensus 115 ~~lLllD~~~~H~~-~~~~~~~~~~~i~l~~lP~~~t~----~lQPlD~~v~~-----~lK~~~~~~~~~~~~~ 178 (213)
+.+||++++..+.. ..+.+.+++.++.+-+++++.-. .|...|+-|+. .+-....+.+.+|..+
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~ 78 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKA 78 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHh
Confidence 34666687766544 45666788899999999987542 34556665554 2445666777888875
No 24
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=21.47 E-value=2.1e+02 Score=20.39 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCccHHHHHHHHH-HHHhhhh-cCCC-CC-eEEeccCCCcccchHHHHHHHHcCcEEEeeCCCC
Q psy5177 89 SGWSSTEIFFETIK-HIQNQIK-ASKE-NP-ALILMDNHETHQSMEAIEYCRASGITLLTFPPHK 149 (213)
Q Consensus 89 ~gw~~~~~f~~wl~-~f~~~~~-~~~~-~~-~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~~~ 149 (213)
.|..+...-+++.. .+..... .+++ .+ +++|.|+.+..-..+..+.+++.||.++.+--+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~~~~~~~~~~~gi~v~~igvG~ 145 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDAAADAARSNRVTVFPIGIGD 145 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCHHHHHHHHHTTEEEEEEEESS
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchHHHHHHHHHHCCCEEEEEEcCC
Confidence 46667667777754 4433211 1122 23 5678898776555667777888999998885554
No 25
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=20.53 E-value=1.2e+02 Score=20.56 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=28.5
Q ss_pred CCCeEEeccCCCcccchHHHHHHHHcCcEEEeeCC
Q psy5177 113 ENPALILMDNHETHQSMEAIEYCRASGITLLTFPP 147 (213)
Q Consensus 113 ~~~~lLllD~~~~H~~~~~~~~~~~~~i~l~~lP~ 147 (213)
.-..+++-.+.+.+....+..+|...+|.++++++
T Consensus 42 kakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~ 76 (112)
T 3iz5_f 42 LGKLIILANNCPPLRKSEIETYAMLAKISVHHFHG 76 (112)
T ss_dssp CCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 44567777777788888999999999999999854
Done!