RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5177
(213 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.042
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 99 ETIKHIQNQIK--ASKENPALILMDNHETHQSME 130
+ +K +Q +K A PAL + +ME
Sbjct: 20 QALKKLQASLKLYADDSAPALAI------KATME 47
Score = 28.4 bits (62), Expect = 1.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 165 KNRLK---AGFKKWTSDNPGSSWPLMAM 189
K LK A K + S+ P +A+
Sbjct: 19 KQALKKLQASLKLYA---DDSA-PALAI 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.1
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 33/161 (20%)
Query: 59 IPPVFVFPRVFMKDEFLLGAPEGSLGFANKSGWSST-EIFFETIKHIQNQIKASKENPAL 117
+P F ++++F PE + GFA ++ E+ + + ++ + ++ SK
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 118 ILMDNHETHQSMEAIE--YCRASGI-TLL-TFPPHKTDELQPLDVAVFSPFKNRLKAGFK 173
+++ + E Y + I L L V KN + A
Sbjct: 82 QVLNL-----CLTEFENCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNYITA--- 129
Query: 174 KWTSDNPGSSWPLMAMWPKISESSRRKFLYRVSRE---RLY 211
+ + P + K S S+ L+R E +L
Sbjct: 130 RIMAKRP---------FDKKSNSA----LFRAVGEGNAQLV 157
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 28.2 bits (62), Expect = 1.7
Identities = 19/135 (14%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 14 WNPDSLVPPPKVVAKKRTKKLGQAASAERGELVTMIGII-RASGEAIPP----------- 61
W + LVP T + + +G V ++G+ E +
Sbjct: 19 WKANLLVPVEDPRELMGTFDFLRDITYPKG-SVKLLGLAGNTDKENLLSQLPSISEGFQE 77
Query: 62 --VFVFPRVFMKDEFLLGAPEGSLGFANKS--------GWSSTEIFFETIKHIQNQIKAS 111
VF + EF G E I+ I +
Sbjct: 78 EGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMY 137
Query: 112 KENPALILMDNHETH 126
+ ++L H
Sbjct: 138 RMG--VLLFSKHPQA 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.1
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 151 DELQPLDVAVFSPFKNRLKAGFKKW--TSDNPGSSWPLMAMWPKIS-ESSRRKFLYRVSR 207
D + +F ++ + +K+ + LM+ + S +Y R
Sbjct: 59 DAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQR 116
Query: 208 ERLYN 212
+RLYN
Sbjct: 117 DRLYN 121
Score = 27.1 bits (59), Expect = 5.6
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 46/158 (29%)
Query: 62 VFVFPRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPALILMD 121
+ VF F+ + F + KS S EI HI + L L
Sbjct: 22 LSVFEDAFVDN-FDCKDVQDMP----KSILSKEEI-----DHIIMS--KDAVSGTLRLFW 69
Query: 122 NHETHQSMEAIEYCRASGIT-----LLTFPPHKTDELQP-LDVAVFSPFKNRLKAGFKKW 175
+ Q E ++ + L++ P KT++ QP + ++ ++RL
Sbjct: 70 TLLSKQE-EMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLY------ 120
Query: 176 TSDNPGSSWPLMAMWPKISESSRRKFLYRVSRERLYNA 213
+DN ++ K Y VSR + Y
Sbjct: 121 -NDNQ--------VFAK----------YNVSRLQPYLK 139
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase,
silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A
{Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A*
1kcd_A*
Length = 335
Score = 27.4 bits (61), Expect = 3.7
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 131 AIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
I C A + T P T L P A + +
Sbjct: 13 DIAGCSAVTLNGFTVPAGNTLVLNPDKGATVT-MAGDITFAKTTL 56
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 27.1 bits (61), Expect = 3.8
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 114 NPALILMD------NH-ETHQSMEAIEYCRASGITLL 143
NP +I+MD H + +A GIT L
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFL 207
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 27.3 bits (61), Expect = 4.1
Identities = 3/37 (8%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 114 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKT 150
P +++ ++ +G+ + T
Sbjct: 59 RPDILIGTEEMGPP--PVLKQLEGAGVRVETLSAKPD 93
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250,
UDP, putative UDP-glucose pyrophosphorylase; HET: UPG
U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4
c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Length = 469
Score = 27.0 bits (59), Expect = 5.8
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 97 FFE-TIKHIQNQIKASKENPALILMDNHETHQ-SMEAIEYCRASGITLLTFPPHK----- 149
F + + I+N L+LM++ TH + + +E S + + TF K
Sbjct: 110 FLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVV 169
Query: 150 TDELQPLD 157
DE P
Sbjct: 170 ADEFVPWP 177
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN
PG4; 1.94A {Colletotrichum lupini}
Length = 339
Score = 26.6 bits (59), Expect = 6.0
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 125 THQSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
+++ C + + + P T ++ L F+ + G+K+W
Sbjct: 8 AAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGKTTFGYKEW 58
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 26.7 bits (60), Expect = 6.6
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 133 EYCRASGITLLTFPPHKTDELQPLDV---AVFSPFKNRLKA 170
+ C +GI + + L P + F+ F N +
Sbjct: 112 KVCEENGIEFKAYEDY---LLTPKSLFHHRNFTSFYNEVSK 149
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A
{Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E
1n4a_A* 1n4d_A
Length = 245
Score = 26.5 bits (59), Expect = 7.0
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 114 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDEL 153
P L++ + ++ + GI ++ +++
Sbjct: 57 KPDLVIAWRGGNAE--RQVDQLASLGIKVMWVDATSIEQI 94
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 26.1 bits (57), Expect = 8.8
Identities = 4/48 (8%), Positives = 15/48 (31%)
Query: 127 QSMEAIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKK 174
+S + G+ + H+ + + +++ K+
Sbjct: 25 ESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKE 72
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha
beta protein, rigid helical backbon substrate-free, heme
transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Length = 255
Score = 26.0 bits (58), Expect = 9.6
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 114 NPALILMDNHETHQSMEAIEYCRASGITLLTFPPHKTDE 152
P ++L+ + +SG+ ++T P T E
Sbjct: 59 KPTMLLVSELAQPS--LVLTQIASSGVNVVTVPGQTTPE 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.406
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,295,472
Number of extensions: 187742
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 18
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)