RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5177
         (213 letters)



>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
           olivochromogenes [TaxId: 1963]}
          Length = 386

 Score = 28.4 bits (63), Expect = 0.62
 Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 2   MGTACLTAYTDYWNPDSLVPPPKVVAK--KRTKKLGQAASAERGELVTM 48
           M T  L  +  + +         V     ++T +    A     +    
Sbjct: 87  MATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVA 135


>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
           niger), endo-polygalacturonase I [TaxId: 5061]}
          Length = 336

 Score = 28.1 bits (62), Expect = 0.71
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 131 AIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
           +I  C    ++ +  P  +T +L          F+     G+K+W
Sbjct: 14  SISSCSDVVLSSIEVPAGETLDLSDAADGSTITFEGTTSFGYKEW 58


>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
           aculeatus) [TaxId: 5053]}
          Length = 339

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 131 AIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
           +   C    ++ +  P   T +L  L+      F      G+K+W
Sbjct: 18  SKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGETTFGYKEW 62


>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
           b3728 [TaxId: 1663]}
          Length = 393

 Score = 26.1 bits (57), Expect = 3.6
 Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 2   MGTACLTAYTDYWNPDSLVPPPKVVAK--KRTKKLGQAASAERGELVTM 48
           M T  L ++  + +         +      +       A+    E   M
Sbjct: 86  MVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVM 134


>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
           {Thermoanaerobacterium [TaxId: 28895]}
          Length = 406

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 66  PRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPAL 117
           P ++   E  +    G+    N++  +S          I+      K NPA+
Sbjct: 356 PAIYYGTEQYM---TGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKSNPAI 404


>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
           niger), endo-polygalacturonase II [TaxId: 5061]}
          Length = 335

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 131 AIEYCRASGITLLTFPPHKTDELQPLDVAVFSPFKNRLKAGFKKW 175
               C    +  +  P   T +L  L       F+      +++W
Sbjct: 14  GKAKCSTITLNNIEVPAGTTLDLTGLTSGTKVIFEGTTTFQYEEW 58


>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
           {Bacillus stearothermophilus, maltogenic alpha-amylase
           [TaxId: 1422]}
          Length = 407

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 66  PRVFMKDEFLLGAPEGSLGFANKSGWSSTEIFFETIKHIQNQIKASKENPAL 117
           P ++   E  +    G     N+    + +      K +       + N A+
Sbjct: 357 PSIYYGTEQYM---AGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRRNNAAI 405


>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
           {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
          Length = 382

 Score = 25.1 bits (53), Expect = 7.4
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 66  PRVFMKDEFLLGAPEGSLGFANKSG--WSSTEIFFETIKHIQNQIKASKENPAL 117
           P ++  DE  L   +G      +    W  T+   +     Q  I+  + + AL
Sbjct: 329 PCIYYGDEVGL---DGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAAL 379


>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 156

 Score = 24.5 bits (52), Expect = 8.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 35  GQAASAERGELVTMIGIIRASGEAIPPVFVF 65
           G  + AE G L  M+G    + E + P   +
Sbjct: 117 GGTSGAEAGTLTVMLGGPEEAVERVRPFLAY 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,734
Number of extensions: 35756
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 9
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)