BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5178
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ODN|A Chain A, The Crystal Structure Of Drosophila Dally-Like Protein
Core Domain
Length = 506
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 2 CESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCG 61
CES + T CC+ E + RQ + H + + +S IL S+A +F +
Sbjct: 37 CESPSVGT----CCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDI----- 87
Query: 62 HSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNV 121
F LL S+ F+ MF RTYG+IYE+NS++F+DLF+ELE YF+ G V
Sbjct: 88 -------------FTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRV 134
Query: 122 DLIEVMDNFFSTLYQKMFTVLNAQYTFDD 150
DL+EVMD FF+TLYQKMFTVLN QYTFD+
Sbjct: 135 DLLEVMDKFFNTLYQKMFTVLNTQYTFDE 163
>pdb|4AD7|A Chain A, Crystal Structure Of Full-Length N-Glycosylated Human
Glypican-1
pdb|4AD7|B Chain B, Crystal Structure Of Full-Length N-Glycosylated Human
Glypican-1
pdb|4AD7|C Chain C, Crystal Structure Of Full-Length N-Glycosylated Human
Glypican-1
pdb|4AD7|D Chain D, Crystal Structure Of Full-Length N-Glycosylated Human
Glypican-1
Length = 528
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N + LR + L ++L ++ FD
Sbjct: 56 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ A F + PR+L
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGEAPREL 208
>pdb|4ACR|A Chain A, Crystal Structure Of N-Glycosylated, C-Terminally
Truncated Human Glypican-1
pdb|4ACR|B Chain B, Crystal Structure Of N-Glycosylated, C-Terminally
Truncated Human Glypican-1
pdb|4ACR|C Chain C, Crystal Structure Of N-Glycosylated, C-Terminally
Truncated Human Glypican-1
pdb|4ACR|D Chain D, Crystal Structure Of N-Glycosylated, C-Terminally
Truncated Human Glypican-1
Length = 478
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N + LR + L ++L ++ FD
Sbjct: 56 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ A F + PR+L
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGEAPREL 208
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 94 YGIIYEQNSFLFTDLFEELEKYFSRGNVDLI 124
YGI QNS L ++L E + +Y S G +DL+
Sbjct: 250 YGIGLPQNSPLTSNLSEFISRYKSSGFIDLL 280
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQ--------YTFDDKISTLYQKIFTVLN 164
++E M FFSTLY+ F +L YT +D + L F LN
Sbjct: 832 VLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLN 881
>pdb|3RPU|G Chain G, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|H Chain H, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|D Chain D, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|E Chain E, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|Y Chain Y, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|Z Chain Z, Crystal Structure Of The Muke-Mukf Complex
Length = 245
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 92 RTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFF 131
R G+ N D E LE++++R NV+LI + FF
Sbjct: 45 RHIGLDELDNHAFLMDFQEYLEEFYARYNVELIRAPEGFF 84
>pdb|3EUH|C Chain C, Crystal Structure Of The Muke-Mukf Complex
pdb|3EUH|E Chain E, Crystal Structure Of The Muke-Mukf Complex
pdb|3EUH|F Chain F, Crystal Structure Of The Muke-Mukf Complex
pdb|3EUH|D Chain D, Crystal Structure Of The Muke-Mukf Complex
Length = 234
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 92 RTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFF 131
R G+ N D E LE++++R NV+LI + FF
Sbjct: 34 RHIGLDELDNHAFLMDFQEYLEEFYARYNVELIRAPEGFF 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,134,220
Number of Sequences: 62578
Number of extensions: 241136
Number of successful extensions: 765
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 10
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)