BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5178
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y625|GPC6_HUMAN Glypican-6 OS=Homo sapiens GN=GPC6 PE=1 SV=1
Length = 555
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E + + ++ + +T + + + SR +FD
Sbjct: 55 EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
FF+ELL ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E++++F++ L ++MF ++N QY F + K L F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207
>sp|Q5RE54|GPC6_PONAB Glypican-6 OS=Pongo abelii GN=GPC6 PE=2 SV=1
Length = 555
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E + + ++ + +T + + + SR +FD
Sbjct: 55 EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
FF+ELL ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E++++F++ L ++MF ++N QY F + K L F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207
>sp|Q9R087|GPC6_MOUSE Glypican-6 OS=Mus musculus GN=Gpc6 PE=1 SV=1
Length = 555
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E + + ++ + +T + + + SR +FD
Sbjct: 55 EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
FF+ELL ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E++++F++ L ++MF ++N QY F + K L F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207
>sp|P51655|GPC4_MOUSE Glypican-4 OS=Mus musculus GN=Gpc4 PE=2 SV=2
Length = 557
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 21/172 (12%)
Query: 5 LRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSF 64
L+IC +CCSQE E + + + + L +I SR +FD
Sbjct: 57 LKICPQDYTCCSQEMEEKYSLQSKDDFKTVVSEQCNHLQAIFASRYKKFDE--------- 107
Query: 65 RELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLI 124
FFKELL ++KS +DMF +TYG +Y QNS LF DLF EL++Y+ GNV+L
Sbjct: 108 ---------FFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVAGNVNLE 158
Query: 125 EVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
E++++F++ L ++MF ++N+QY F D+ K L F D PR+L
Sbjct: 159 EMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLK---PFGDVPRKL 207
>sp|O75487|GPC4_HUMAN Glypican-4 OS=Homo sapiens GN=GPC4 PE=1 SV=4
Length = 556
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 21/172 (12%)
Query: 5 LRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSF 64
L+IC +CCSQE E + + + + L ++ SR +FD
Sbjct: 57 LKICPQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFDE--------- 107
Query: 65 RELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLI 124
FFKELL ++KS +DMF +TYG +Y QNS LF DLF EL++Y+ GNV+L
Sbjct: 108 ---------FFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLE 158
Query: 125 EVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
E++++F++ L ++MF ++N+QY F D+ K L F D PR+L
Sbjct: 159 EMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLK---PFGDVPRKL 207
>sp|P50593|GPC1_CHICK Glypican-1 OS=Gallus gallus GN=GPC1 PE=2 SV=1
Length = 550
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E + N R ++ +++ S+ +IL ++ FD
Sbjct: 54 EHLRICPQGYTCCTSEMEENFANKSRSEFEAMMKEAGRSVQTILTAQYKSFD-------- 105
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
+F++LL+ S+K+ +D F YG +Y QN +F DL+ EL +Y+ N++
Sbjct: 106 ----------NYFQDLLNKSEKALYDTFPSLYGDLYTQNMKVFKDLYSELRRYYRGSNIN 155
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDK 151
L E ++ F++ L +++F ++NAQY D+
Sbjct: 156 LEEALNEFWTRLLERLFKLMNAQYHITDE 184
>sp|Q0V9W0|GPC1_XENTR Glypican-1 OS=Xenopus tropicalis GN=gpc1 PE=2 SV=1
Length = 554
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E + N+ R ++ LR++ S+ +L ++ FD+
Sbjct: 57 EHLRICPQGYTCCTSEMEENFANISRVEFEAKLRESSASIQRLLTTQHRNFDS------- 109
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
+F++LL+TS++ + F YG +Y QNS +F DL+ EL +Y+ ++
Sbjct: 110 -----------YFQDLLNTSERVLQERFPSQYGDLYSQNSKIFRDLYSELRQYYRGSGIN 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F+S L +++F + QY+F ++ K + L F D PR++
Sbjct: 159 LEEALIEFWSRLLERVFKAQHTQYSFSEEYMDCLVKQYEQLKP---FGDTPREV 209
>sp|Q9QZF2|GPC1_MOUSE Glypican-1 OS=Mus musculus GN=Gpc1 PE=1 SV=1
Length = 557
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N R + L + +L + L ++ H D
Sbjct: 57 EHLRICPQGYTCCTSEMEENLANHSRMELESALHDSSRALQATLATQLHGID-------- 108
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ + F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 109 ----------DHFQRLLNDSERTLQEAFPGAFGDLYTQNTRAFRDLYAELRLYYRGANLH 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ A F D PR+L
Sbjct: 159 LEETLAEFWARLLERLFKQLHPQLLPDDYLDCLGKQA----EALRPFGDAPREL 208
>sp|P35053|GPC1_RAT Glypican-1 OS=Rattus norvegicus GN=Gpc1 PE=1 SV=1
Length = 558
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N R + L + +L + L ++ H D
Sbjct: 57 EHLRICPQGYTCCTSEMEENLANHSRMELETALHDSSRALQATLATQLHGID-------- 108
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ D F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 109 ----------DHFQRLLNDSERTLQDAFPGAFGDLYTQNTRAFRDLYAELRLYYRGANLH 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ A F D PR+L
Sbjct: 159 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGDAPREL 209
>sp|G3X745|GPC1_BOVIN Glypican-1 OS=Bos taurus GN=GPC1 PE=2 SV=1
Length = 559
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N R + L + +L + L ++ FD
Sbjct: 57 EHLRICPQGYTCCTSEMEENLANRSRAELETALLEGTRALQATLAAQQRGFD-------- 108
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ + F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 109 ----------DHFQRLLNDSERALQEAFPGAFGELYTQNAKAFRDLYAELRLYYGGANLH 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ + F + PR+L
Sbjct: 159 LQETLAEFWARLLERLFRQLHPQLLLPDDYLDCLGKQAEPL----RPFGEAPREL 209
>sp|P51653|GPC2_RAT Glypican-2 OS=Rattus norvegicus GN=Gpc2 PE=1 SV=1
Length = 579
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E L+IC +CCS E E + ++ + + L L +R +F+
Sbjct: 57 EHLQICPQEYTCCSSETEQKLIRDAEVTFRGLVEDSGSFLIHTLAARHRKFNE------- 109
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
FF+E+LS S+ S +F +YG +Y Q++ +F LF L Y+ +
Sbjct: 110 -----------FFREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGLRDYYEKSGEG 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L + + +F++ L ++ F +L+ QY+F D + L + T + F D+PR+L
Sbjct: 159 LDDTLADFWAQLLERAFPLLHPQYSFPPDFLLCLTRLTSTADGSLQPFGDSPRRL 213
>sp|Q8N158|GPC2_HUMAN Glypican-2 OS=Homo sapiens GN=GPC2 PE=1 SV=1
Length = 579
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LR+C +CCS E E + ++ + + L L +R +FD
Sbjct: 57 EHLRVCPQEYTCCSSETEQRLIRETEATFRGLVEDSGSFLVHTLAARHRKFDE------- 109
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
FF E+LS ++ S +F +YG +Y Q++ +F LF L ++
Sbjct: 110 -----------FFLEMLSVAQHSLTQLFSHSYGRLYAQHALIFNGLFSRLRDFYGESGEG 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L + + +F++ L +++F +L+ QY+F D + L + + + F D+PR+L
Sbjct: 159 LDDTLADFWAQLLERVFPLLHPQYSFPPDYLLCLSRLASSTDGSLQPFGDSPRRL 213
>sp|F1QCC6|GPC1_DANRE Glypican-1 OS=Danio rerio GN=gpc1 PE=2 SV=1
Length = 554
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E ++ N+ R+ ++ +R+ S+ ++L ++ FD
Sbjct: 54 EHLRICPQGYTCCTSAMEETLSNLSRREFEGLVREAGRSIQALLNAQYRTFDT------- 106
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
+F ELL+ S++ + F G +Y N+ +F DL+ EL +Y+S +++
Sbjct: 107 -----------YFLELLNGSERWLEEAFVAALGELYRLNAGVFRDLYAELHRYYSGASLN 155
Query: 123 LIEVMDNFFSTLYQKMFTVLN---AQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E +D F+ L +++ + A DD + ++ T+ F D PR+L
Sbjct: 156 LEEALDEFWMKLLERLLKASDPETASLLSDDFLDCASKQTETL----RPFGDAPREL 208
>sp|Q8BKV1|GPC2_MOUSE Glypican-2 OS=Mus musculus GN=Gpc2 PE=2 SV=1
Length = 579
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E L++C +CCS E E K +R + +++ D+ S + H
Sbjct: 57 EHLQVCPQEYTCCSSETE-----------QKLIRDAEVTFRGLVE------DSGSFLI-H 98
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
+ R FF+E+LS S+ S +F +YG +Y Q++ +F LF L Y+ +
Sbjct: 99 TLAARHRKFNEFFREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGLRDYYEKSGEG 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L + + +F++ L ++ F +L+ QY+F D + L + T + F D+PR+L
Sbjct: 159 LDDTLADFWAQLLERAFPLLHPQYSFPPDFLLCLTRLTSTADGSLQPFGDSPRRL 213
>sp|P35052|GPC1_HUMAN Glypican-1 OS=Homo sapiens GN=GPC1 PE=1 SV=2
Length = 558
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N + LR + L ++L ++ FD
Sbjct: 57 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 108
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 109 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 158
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
L E + F++ L +++F L+ Q DD + L ++ A F + PR+L
Sbjct: 159 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGEAPREL 209
>sp|Q8UI98|PYRE_AGRT5 Orotate phosphoribosyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=pyrE PE=3 SV=1
Length = 232
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 77 ELLSTSKKS---FHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFST 133
E L+T+ S F D + GI+ + + +FEE E F+ GNV L + T
Sbjct: 133 EDLTTAGGSMFTFIDAIRAAGGIVDHGIALFYYGIFEEAEARFANGNVKL------HYLT 186
Query: 134 LYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEA-HGGEPQL 189
++ + V A+ FD+K L+ F DNP P A HGG +L
Sbjct: 187 TWRDVLAVARAEKLFDEK----------TLSGVEAFLDNPL----PWSAKHGGVSEL 229
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2
Length = 341
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 40 YSLSSILKSRAHRFDALSTMCGHSFRELRRS 70
+ L + + RAH+ +A+S +C +++LRRS
Sbjct: 289 FPLEPLSRERAHKLEAISRLCEDKYKDLRRS 319
>sp|P24153|HAPT_VIBCH Hemagglutinin/proteinase OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=hap PE=1 SV=1
Length = 609
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 87 HDMFKRTYGIIYEQNSF----LFTDLFEELEKYFSRGNVDLIEVMDNFFST 133
H ++ G++Y S F+D+ E +YF RGNVD I D F S+
Sbjct: 347 HGFTEQNSGLVYRDMSGGINEAFSDIAGEAAEYFMRGNVDWIVGADIFKSS 397
>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metH PE=3 SV=1
Length = 1226
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 76 KELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDL-----FEELEKYFSRGNVDLI 124
K LL+T K HD+ K G++ + N+F DL E++ K NVD+I
Sbjct: 749 KILLATVKGDVHDIGKNIVGVVLQCNNFEIIDLGVMVPCEQILKVAREQNVDII 802
>sp|Q6D446|MUKE_ERWCT Chromosome partition protein MukE OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mukE
PE=3 SV=3
Length = 231
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 92 RTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFF 131
R GI +N D E LE+++SR NV+LI + FF
Sbjct: 25 RHIGIEELENHVFLMDFQEVLEEFYSRYNVELIRAPEGFF 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,150,724
Number of Sequences: 539616
Number of extensions: 3066406
Number of successful extensions: 10066
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10022
Number of HSP's gapped (non-prelim): 28
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)