Query psy5178
Match_columns 219
No_of_seqs 122 out of 184
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:20:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3821|consensus 100.0 4.4E-62 9.4E-67 461.9 19.1 191 3-217 57-251 (563)
2 PF01153 Glypican: Glypican; 100.0 1.3E-58 2.9E-63 446.0 17.5 190 3-216 49-242 (557)
3 KOG3821|consensus 81.3 20 0.00043 35.8 11.0 55 124-181 138-193 (563)
4 KOG4353|consensus 71.0 12 0.00025 30.8 5.4 57 73-134 7-64 (139)
5 PF04155 Ground-like: Ground-l 50.9 20 0.00044 25.8 3.2 19 10-28 2-20 (76)
6 PF12339 DNAJ_related: DNA-J r 42.6 17 0.00036 29.6 1.8 32 102-133 99-130 (132)
7 PF04048 Sec8_exocyst: Sec8 ex 40.3 1.4E+02 0.003 24.1 6.8 51 27-90 41-92 (142)
8 PF04091 Sec15: Exocyst comple 37.7 37 0.00081 31.0 3.5 49 90-139 30-78 (311)
9 KOG0995|consensus 34.0 90 0.002 31.4 5.6 73 130-205 104-179 (581)
10 PF01153 Glypican: Glypican; 32.9 5.1E+02 0.011 25.9 11.1 88 76-170 89-177 (557)
11 PF09763 Sec3_C: Exocyst compl 32.3 73 0.0016 32.1 4.9 80 20-118 620-701 (701)
12 PF06046 Sec6: Exocyst complex 32.0 74 0.0016 30.8 4.7 30 182-211 467-502 (566)
13 TIGR03354 VI_FHA type VI secre 31.5 2.8E+02 0.0061 26.3 8.4 36 65-100 358-393 (396)
14 PRK12539 RNA polymerase sigma 27.8 2.5E+02 0.0054 22.7 6.6 23 116-138 45-67 (184)
15 PF07393 Sec10: Exocyst comple 26.7 1.8E+02 0.004 29.4 6.6 66 70-139 233-298 (710)
16 KOG2022|consensus 26.1 1.5E+02 0.0032 31.7 5.7 125 77-217 435-583 (982)
17 PF12834 Phage_int_SAM_2: Phag 24.8 68 0.0015 24.1 2.5 60 124-190 26-85 (91)
18 PF14555 UBA_4: UBA-like domai 23.8 79 0.0017 20.2 2.3 21 113-133 19-39 (43)
19 KOG1992|consensus 23.3 8E+02 0.017 26.3 10.3 49 74-122 169-223 (960)
20 PF10274 ParcG: Parkin co-regu 21.9 5.1E+02 0.011 22.2 7.5 83 56-139 25-130 (183)
21 PF10305 Fmp27_SW: RNA pol II 21.7 2.6E+02 0.0056 21.4 5.2 40 81-120 1-40 (103)
22 cd07663 BAR_SNX5 The Bin/Amphi 20.9 5.7E+02 0.012 22.5 7.8 56 19-89 155-210 (218)
23 PF08099 Toxin_27: Scorpion ca 20.5 37 0.0008 21.1 0.2 17 3-19 5-21 (33)
24 PF03801 Ndc80_HEC: HEC/Ndc80p 20.4 3.2E+02 0.0069 22.5 5.8 74 125-201 66-143 (157)
No 1
>KOG3821|consensus
Probab=100.00 E-value=4.4e-62 Score=461.86 Aligned_cols=191 Identities=32% Similarity=0.514 Sum_probs=185.6
Q ss_pred CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS 82 (219)
Q Consensus 3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s 82 (219)
|||+||||||||||+|||++|+.+|+.+||++++++++.|+++|++||++|| |||++||+.|
T Consensus 57 e~l~iC~~~~tCCt~emEerl~~~a~~~feqllq~~s~~Lr~~l~s~~r~F~------------------E~f~ell~~a 118 (563)
T KOG3821|consen 57 EHLRICPQGYTCCTREMEERLQLQARDMFEQLLQDSSSVLRFVLASNARKFD------------------EFFLELLRNA 118 (563)
T ss_pred cceeeCCCCcCcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178 83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162 (219)
Q Consensus 83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~ 162 (219)
||+|++||+++||+||+||+.+|++||++|++||.|+++||||+|++||++|||+||+++||+|++++||.+|+++.++
T Consensus 119 e~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~l~eff~~Lf~~~f~~l~~~~~~~~Dy~eCl~~~~~- 197 (563)
T KOG3821|consen 119 ENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEETLNEFFARLFEVMFSQLNPQYDFTLDYLECLSKARR- 197 (563)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeeec
Q psy5178 163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL 217 (219)
Q Consensus 163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~~ 217 (219)
+|+||||+||+|+.|++ |||+|+|||++|+|||++++.. ..+.+|+-||+
T Consensus 198 --~l~pFGdiPq~l~~Q~trsl~~ar~Flq~L~~g~eVv~~~~~v---~~s~~C~raLl 251 (563)
T KOG3821|consen 198 --ELKPFGDIPQKLMLQVTRSLVAARTFLQGLEVGIEVVSEVDKV---PFSEECSRALL 251 (563)
T ss_pred --hcCCcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcC---CCChHHHHHHH
Confidence 99999999999999999 9999999999999999997643 37788887765
No 2
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=100.00 E-value=1.3e-58 Score=446.03 Aligned_cols=190 Identities=34% Similarity=0.615 Sum_probs=172.8
Q ss_pred CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS 82 (219)
Q Consensus 3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s 82 (219)
+||||||+||||||++||++|+++|+++||++|++++++|+++|.+++++|| +||++||++|
T Consensus 49 ~~L~vCp~g~TCCT~~mEe~l~~~s~~~~~~~v~~~s~~L~~~l~~~~~~F~------------------~~f~~ll~~s 110 (557)
T PF01153_consen 49 EHLRVCPQGYTCCTSEMEERLQQASRREFEQLVQESSRSLQHLLSTRARKFD------------------EFFRELLRQS 110 (557)
T ss_dssp TT-SSS-SSSBSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred cccCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178 83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162 (219)
Q Consensus 83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~ 162 (219)
|++|++||+++||.||.||+++|.+||++|++||.|+++||+++|++||++|||++|+++||+|.+++||++|++++++
T Consensus 111 e~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~Lf~~~f~llnp~~~~~~dy~~Cl~~~~~- 189 (557)
T PF01153_consen 111 ENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFFDRLFPRVFRLLNPQYQFSDDYLECLRKAME- 189 (557)
T ss_dssp HHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHHHHHHHHHHHTTTSB--CHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhccCcCCCchHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeee
Q psy5178 163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHI 216 (219)
Q Consensus 163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~ 216 (219)
+|+||||+|++|+.|++ |||+|+|||++|+|||+++. +. +....|.-+|
T Consensus 190 --~l~PFGd~P~~l~~~l~rsl~a~R~f~qaL~~g~eVv~~~~-~~--~~s~~C~raL 242 (557)
T PF01153_consen 190 --DLKPFGDIPRKLKSQLSRSLVAARVFLQALNLGREVVNKTD-QV--PLSPECSRAL 242 (557)
T ss_dssp --HH-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T------CHHHHHH
T ss_pred --hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC--CCCcHHHHHH
Confidence 99999999999999999 99999999999999999965 33 5555665544
No 3
>KOG3821|consensus
Probab=81.27 E-value=20 Score=35.80 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHH-HHhccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhccchh
Q psy5178 124 IEVMDNFFSTLYQKMF-TVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPME 181 (219)
Q Consensus 124 e~~l~~FF~~Lf~~~f-~llnp~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~~ql~ 181 (219)
.+++++||.+|---.. .-+|+.-.+.+.+..-+...+. .+.|++|.|.....=|+
T Consensus 138 ~~~~~dlFtel~~y~~~~~~nlee~l~eff~~Lf~~~f~---~l~~~~~~~~Dy~eCl~ 193 (563)
T KOG3821|consen 138 AELFNDLFTELKLYYVGSNVNLEETLNEFFARLFEVMFS---QLNPQYDFTLDYLECLS 193 (563)
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH---HhcCCcCCcHHHHHHHH
Confidence 3455555555533222 2233322344445566666666 99999999988776666
No 4
>KOG4353|consensus
Probab=70.96 E-value=12 Score=30.85 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHH
Q psy5178 73 GFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFS-RGNVDLIEVMDNFFSTL 134 (219)
Q Consensus 73 e~F~~LL~~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~-G~~~~Le~~l~~FF~~L 134 (219)
.+.++..+.|+. |.+.|=+....++.-+..||.+-..-.- |..++--|++.+||..|
T Consensus 7 ~~ves~cr~A~e-----Fv~~YY~smD~rR~~i~rlY~~~atlvWNGn~v~g~esls~ff~~L 64 (139)
T KOG4353|consen 7 TYVESACRAAEE-----FVNVYYSSMDKRRRGIGRLYLDNATLVWNGNPVSGTESLSEFFNML 64 (139)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHhhccceEEEcCCcchhHHHHHHHHHhC
Confidence 556677777766 7888888888899999999988776654 66799999999999865
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=50.89 E-value=20 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.7
Q ss_pred CCCCCCChHHHHHHHHHHH
Q psy5178 10 SRLSCCSQEHEISVHNVIR 28 (219)
Q Consensus 10 ~g~TCCt~~mEe~l~~~s~ 28 (219)
.|+.||+.++.+-+.+..+
T Consensus 2 ~~~~Cn~~~L~~ii~~~~~ 20 (76)
T PF04155_consen 2 DDNKCNSEELRKIILKNMK 20 (76)
T ss_pred CCCccCCHHHHHHHHHHhc
Confidence 4789999999888877666
No 6
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=42.60 E-value=17 Score=29.62 Aligned_cols=32 Identities=6% Similarity=0.322 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy5178 102 SFLFTDLFEELEKYFSRGNVDLIEVMDNFFST 133 (219)
Q Consensus 102 ~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~ 133 (219)
.+..++.|-|+.+|..-+...|++.+++||.+
T Consensus 99 ~d~Lr~YYLDw~n~~~t~~~~V~~LL~~FW~r 130 (132)
T PF12339_consen 99 DDPLREYYLDWQNYEETSEAEVERLLNSFWQR 130 (132)
T ss_pred cchHHHHHccHHHHhhcCHHHHHHHHHHHHHh
Confidence 56788888888888888888999999999986
No 7
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=40.27 E-value=1.4e+02 Score=24.09 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHhhhhcc-ccccccCcchhhhccChhHHHHHHHHHHHHHHHHHH
Q psy5178 27 IRQSYDKHLRQTLYSLSSILKSRAHRFD-ALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMF 90 (219)
Q Consensus 27 s~~~~e~~v~~~s~~L~~~l~~~~~~Fd-~~~~~~~~~~~~~~~~~~e~F~~LL~~se~~l~~mF 90 (219)
-..+|++.-+.....|+.++..++..|. .|..| .-....++.|+.+...+-
T Consensus 41 ~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy-------------~~i~~~i~~sq~~i~~lK 92 (142)
T PF04048_consen 41 RYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSY-------------SQILSSISESQERIRELK 92 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3457888888888999999999999998 55444 556666777777766664
No 8
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=37.69 E-value=37 Score=31.03 Aligned_cols=49 Identities=6% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q psy5178 90 FKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMF 139 (219)
Q Consensus 90 F~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f 139 (219)
|+.+|...+.+-+.++.+.|.=+..++. ...+++++|.+..+.|+-+.+
T Consensus 30 FS~~vp~~c~~ir~fi~~~~~F~~~~~~-~~~eid~~v~ks~d~lL~~~l 78 (311)
T PF04091_consen 30 FSQMVPMCCRQIRSFIEKCYKFSDDLYQ-SSTEIDDIVRKSLDRLLTRVL 78 (311)
T ss_dssp SBTHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555544444 445899999999999998865
No 9
>KOG0995|consensus
Probab=34.02 E-value=90 Score=31.42 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHhhhccC-CCCCCchhhhccchh--hhchHHHHhhhHHHHHHHHHHHhc
Q psy5178 130 FFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQ-YTFDDNPRQLGSPME--AHGGEPQLLNCKSDSSKSFTIRFG 205 (219)
Q Consensus 130 FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~~~~l-~PFGd~P~~L~~ql~--AaR~f~qaL~~g~eVv~~~t~~~~ 205 (219)
=|...|..+|.-++|.|.|+..+-+=+..-+. .| +||-..-..+.+-.+ .|=+++-+|.--.+.|+--++...
T Consensus 104 dF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK---~L~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~~t~~v~ 179 (581)
T KOG0995|consen 104 DFIAIFKFLYGFLDPDYEFPERIEEEVVQILK---NLKYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRINTALVE 179 (581)
T ss_pred cHHHHHHHHHhccCCCcccchhHHHHHHHHHH---hCCCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHHhHHHhh
Confidence 36788899998899999998888887777777 66 799766554444444 888999999999999987665544
No 10
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=32.93 E-value=5.1e+02 Score=25.86 Aligned_cols=88 Identities=22% Similarity=0.449 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH-HHhccCCCCChHHHH
Q psy5178 76 KELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMF-TVLNAQYTFDDKIST 154 (219)
Q Consensus 76 ~~LL~~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f-~llnp~~~~~~dy~e 154 (219)
+.+|..-.+.+++.|...-...-..-..+|...|..|... + ...+.+||++|-.-+. .-+|-.-.+++.|..
T Consensus 89 ~~~l~~~~~~F~~~f~~ll~~se~~~~~~F~~~Y~~ly~~----~---~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~ 161 (557)
T PF01153_consen 89 QHLLSTRARKFDEFFRELLRQSENSLHSMFSRTYGSLYPQ----N---RPIFQDLFTDLRRYYLGSNVNLEEALNEFFDR 161 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC----T---HHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 3445555555555555444444444444444444443332 1 3334444444332221 111111135667888
Q ss_pred HHHHHHhhhccCCCCC
Q psy5178 155 LYQKIFTVLNAQYTFD 170 (219)
Q Consensus 155 Cl~~~~~~~~~l~PFG 170 (219)
-+...+.++|....|+
T Consensus 162 Lf~~~f~llnp~~~~~ 177 (557)
T PF01153_consen 162 LFPRVFRLLNPQYQFS 177 (557)
T ss_dssp HHHHHHHHHTTTSB--
T ss_pred HHHHHHHHhccCcCCC
Confidence 8888888444444333
No 11
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=32.28 E-value=73 Score=32.14 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHH-HHHHHHHHHHH-hhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5178 20 EISVHNV-IRQSYDKHLRQ-TLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGII 97 (219)
Q Consensus 20 Ee~l~~~-s~~~~e~~v~~-~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~se~~l~~mF~~tYg~l 97 (219)
|-.++.+ +++++.++|.. .+..++..+..-+++.+ .||..--+.. ..-..++..+|..+
T Consensus 620 ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krve------------------KHf~~~~~~~-~~~~~Ll~~vW~~~ 680 (701)
T PF09763_consen 620 EISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVE------------------KHFSRDADDP-SFEEDLLQVVWSAM 680 (701)
T ss_pred hcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHH------------------HHcCCccccc-cchhhHHHHHHHHH
Confidence 3344333 68888888888 57777777777777777 6661111100 11234555666666
Q ss_pred HHHhhHHHHHHHHHHHHHhcc
Q psy5178 98 YEQNSFLFTDLFEELEKYFSR 118 (219)
Q Consensus 98 y~qn~~~f~~LF~dL~~Y~~G 118 (219)
-.+.-..+..|++-|.+.|-|
T Consensus 681 q~~~i~~~~~l~~li~~~Y~g 701 (701)
T PF09763_consen 681 QEEFIRQYERLETLIQKCYPG 701 (701)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666666654
No 12
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=32.02 E-value=74 Score=30.85 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=17.6
Q ss_pred hhchHHHHhh------hHHHHHHHHHHHhcccCCCC
Q psy5178 182 AHGGEPQLLN------CKSDSSKSFTIRFGVKNPMG 211 (219)
Q Consensus 182 AaR~f~qaL~------~g~eVv~~~t~~~~~~~~~~ 211 (219)
..+.|.+.+. ...+++..+....+.+.|+.
T Consensus 467 ~l~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~ 502 (566)
T PF06046_consen 467 QLKSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEM 502 (566)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCC
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHhcCCHHH
Confidence 6666766666 55566666666665555543
No 13
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=31.54 E-value=2.8e+02 Score=26.34 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=30.0
Q ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5178 65 RELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQ 100 (219)
Q Consensus 65 ~~~~~~~~e~F~~LL~~se~~l~~mF~~tYg~ly~q 100 (219)
.++|....+++.++.+..++.+..+|...|..-|.+
T Consensus 358 a~~W~~Y~~~y~~l~~~~e~~f~~lf~e~Fa~aYe~ 393 (396)
T TIGR03354 358 AWAWDMYLRYYRELRSDREQGFERLFGEDFAQAYEE 393 (396)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 466777888889998888888999988888888865
No 14
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=27.79 E-value=2.5e+02 Score=22.69 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=17.1
Q ss_pred hccCCCCHHHHHHHHHHHHHHHH
Q psy5178 116 FSRGNVDLIEVMDNFFSTLYQKM 138 (219)
Q Consensus 116 ~~G~~~~Le~~l~~FF~~Lf~~~ 138 (219)
+.|+..+-+|++.+-|-.++...
T Consensus 45 ~~~~~~~AeDlvQe~~l~l~~~~ 67 (184)
T PRK12539 45 IGRGAEEAEDLVQEALMAIHTRR 67 (184)
T ss_pred ccCCcchHHHHHHHHHHHHHHHH
Confidence 44667788888888888877654
No 15
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=26.71 E-value=1.8e+02 Score=29.36 Aligned_cols=66 Identities=23% Similarity=0.373 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q psy5178 70 SLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMF 139 (219)
Q Consensus 70 ~~~e~F~~LL~~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f 139 (219)
.+++++..+|+.+...-...|.++...+|.+ ..+|..+|..+..+...+-......+.++++..+|
T Consensus 233 ~I~~~i~~lL~~a~~~s~~~YLr~l~~~y~~----t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF 298 (710)
T PF07393_consen 233 VIQEYIESLLEEASSISTLAYLRTLHGLYSQ----TKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLF 298 (710)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----HHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHH
Confidence 3668899999999866666677777777766 56888999999655555533445566666666666
No 16
>KOG2022|consensus
Probab=26.13 E-value=1.5e+02 Score=31.69 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCC--------------------CCHHHHHHHHHHHHHH
Q psy5178 77 ELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGN--------------------VDLIEVMDNFFSTLYQ 136 (219)
Q Consensus 77 ~LL~~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~--------------------~~Le~~l~~FF~~Lf~ 136 (219)
+=.+.-++...+++-..|.-+. ..+..-|++.|.+....++ .++.+..++-+.+||+
T Consensus 435 e~F~~YR~diSD~~~~~Y~ilg---d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~ 511 (982)
T KOG2022|consen 435 EQFESYRKDISDLLMSSYSILG---DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFE 511 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence 3344556666667766666555 5556666666766665443 2444444555555555
Q ss_pred HHHH----HhccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhccchhhhchHHHHhhhHHHHHHHHHHHhcccCCCCc
Q psy5178 137 KMFT----VLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGS 212 (219)
Q Consensus 137 ~~f~----llnp~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~~ql~AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~ 212 (219)
.... .+||+. -..|....-. ...-+|+.|..|--- --.++|||....+-+.++.- =.+.-.+|
T Consensus 512 ~~asik~S~~n~ql-----~~Tss~~igs---~s~~l~e~P~~ln~s---l~~L~~~Lh~sk~s~q~i~t--l~tlC~~C 578 (982)
T KOG2022|consen 512 TSASIKLSAPNPQL-----LSTSSDLIGS---LSNWLGEHPMYLNPS---LPLLFQGLHNSKESEQAIST--LKTLCETC 578 (982)
T ss_pred hccccccccCChhH-----HHHHHHHHHH---HHHHHhcCCcccCch---HHHHHHHhcCchHHHHHHHH--HHHHHHhh
Confidence 5542 123332 2234333333 456778888765444 45788999777766666442 12355566
Q ss_pred eeeec
Q psy5178 213 TIHIL 217 (219)
Q Consensus 213 ~~~~~ 217 (219)
+.||.
T Consensus 579 ~~~L~ 583 (982)
T KOG2022|consen 579 PESLD 583 (982)
T ss_pred hhhCc
Confidence 66654
No 17
>PF12834 Phage_int_SAM_2: Phage integrase, N-terminal; InterPro: IPR024457 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. This entry represents the N-terminal predicted alpha-helical domain found in a family of putative prophage DNA-binding integrases.
Probab=24.77 E-value=68 Score=24.13 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhccchhhhchHHHHh
Q psy5178 124 IEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLL 190 (219)
Q Consensus 124 e~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~~ql~AaR~f~qaL 190 (219)
...+.+|+..|...=|.+-+| ..+.++..+++-+.+. +- |-.|+.|.+.+++-|.|.+..
T Consensus 26 ~~~~~~~~~~L~~~g~~i~~~-~~lk~kHI~~lv~~w~---~~---gis~~TiqN~ms~lR~~~~~~ 85 (91)
T PF12834_consen 26 MRILKRFARFLRELGFQIRSI-RNLKPKHIEALVQHWK---AQ---GISPRTIQNEMSALRWFLRWI 85 (91)
T ss_pred HHHHHHHHHHHHHCCCCcCCH-HHhhHHHHHHHHHHHH---Hc---CCCHHHHHHHHHHHHHHHHHc
Confidence 456677777776554433322 1588899999999998 54 899999999999888887654
No 18
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=23.76 E-value=79 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=16.1
Q ss_pred HHHhccCCCCHHHHHHHHHHH
Q psy5178 113 EKYFSRGNVDLIEVMDNFFST 133 (219)
Q Consensus 113 ~~Y~~G~~~~Le~~l~~FF~~ 133 (219)
..|+...+-||+.+|+.||+.
T Consensus 19 ~~~L~~~~wdle~Av~~y~~~ 39 (43)
T PF14555_consen 19 IQYLEANNWDLEAAVNAYFDD 39 (43)
T ss_dssp HHHHHHTTT-HHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 456667788999999999974
No 19
>KOG1992|consensus
Probab=23.32 E-value=8e+02 Score=26.34 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHhhHHHHHHHHHHH----HHhccCCCC
Q psy5178 74 FFKELLSTSKKSFHDMFKRTYGII--YEQNSFLFTDLFEELE----KYFSRGNVD 122 (219)
Q Consensus 74 ~F~~LL~~se~~l~~mF~~tYg~l--y~qn~~~f~~LF~dL~----~Y~~G~~~~ 122 (219)
-.+-.|+.-...+.++|++++--. -.++...+..+|+.|. .||+=...+
T Consensus 169 EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QD 223 (960)
T KOG1992|consen 169 EIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQD 223 (960)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccc
Confidence 344456666667778888887766 5666676666776544 455544333
No 20
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=21.89 E-value=5.1e+02 Score=22.22 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=50.5
Q ss_pred cccccCcchhhhccChhHHHHHHHH-------HHHHHHHHHHHH------------hH----HHHHHHhhHHHHHHHHHH
Q psy5178 56 LSTMCGHSFRELRRSLPGFFKELLS-------TSKKSFHDMFKR------------TY----GIIYEQNSFLFTDLFEEL 112 (219)
Q Consensus 56 ~~~~~~~~~~~~~~~~~e~F~~LL~-------~se~~l~~mF~~------------tY----g~ly~qn~~~f~~LF~dL 112 (219)
|.|.+.-.-.+|-.|+|-||+.|-. .|.+-..+|... .= .-+.+.|.+++..--.-|
T Consensus 25 l~W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~L 104 (183)
T PF10274_consen 25 LQWKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKAL 104 (183)
T ss_pred eEEecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4455544445555666666666655 455555555554 22 223344666666666666
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHH
Q psy5178 113 EKYFSRGNVDLIEVMDNFFSTLYQKMF 139 (219)
Q Consensus 113 ~~Y~~G~~~~Le~~l~~FF~~Lf~~~f 139 (219)
..-... .--+.++|.-|+.+|+|.+-
T Consensus 105 q~Lv~~-~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 105 QQLVTS-SDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHh-hhhhhHHHHHHHHHHHHHHH
Confidence 555333 33577999999999999875
No 21
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=21.65 E-value=2.6e+02 Score=21.43 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCC
Q psy5178 81 TSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGN 120 (219)
Q Consensus 81 ~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~ 120 (219)
+|...|+..|++++-.-+..+.....+-+.+++.++.|.+
T Consensus 1 eA~~rL~~~~S~SWi~ri~~~k~~~~~~~~~~~~~~~G~~ 40 (103)
T PF10305_consen 1 EARERLQENNSTSWIRRIRKAKRTQKRRIKENRSYLWGND 40 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3678899999999999999999999999999999999987
No 22
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=20.92 E-value=5.7e+02 Score=22.52 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHHHHHHHHH
Q psy5178 19 HEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDM 89 (219)
Q Consensus 19 mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~se~~l~~m 89 (219)
.|..+++ ++++|+++-...-..|...=..+...|. ..+-+|.+..|.++++...-+
T Consensus 155 aE~~~~e-a~~~Fe~IS~~~k~El~rF~~~Rv~~Fk--------------~~lve~~E~~ik~ak~~~~~~ 210 (218)
T cd07663 155 AEAHQQE-CCQKFEKLSESAKQELISFKRRRVAAFR--------------KNLIEMTELEIKHAKNNVSLL 210 (218)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 8899999999999999988888888888 223377777788877754433
No 23
>PF08099 Toxin_27: Scorpion calcine family; InterPro: IPR012632 Toxins of the scorpion calcine family bind directly to ryanodine receptors (RyRs), intracellular channel targets of the endoplasmic reticulum, and induce long lasting channel openings in a mode of smaller conductance. They have the ability to translocate into cells by crossing the plasma membrane [, , ]. Toxins of scorpion calcine family are highly basic 33-amino acid peptides that present three disulphide bridges (C1-C4, C2-C5, and C3-C6) and fold along a knottin or inhibitor cystine knot motif (http://knottin.cbs.cnrs.fr) [, , ]. Their three dimensional structure consists of a compact disulphide-bonded core from which emerge loops and the N terminus. The main element of regular secondary structure is a double-stranded antiparallel beta-sheet. A third peripheral extended strand is almost perpendicular to the double-stranded antiparallel beta-sheet [, ]. Scorpion calcine mimic the activating segment of the dihydropyridine receptor II-III loop, which interacts with a region of the ryanodine receptor [, , ]. This family includes: Imperatoxin-A (IpTx A) from Pandinus imperator (Emperor scorpion). Opicalcin-1 and -2 from Opistophthalmus carinatus (African yellow leg scorpion). Maurocalcin (MCa) from Scorpio maurus palmatus (Chactoid scorpion). ; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1IE6_A.
Probab=20.51 E-value=37 Score=21.14 Aligned_cols=17 Identities=29% Similarity=0.798 Sum_probs=11.8
Q ss_pred CCCcccCCCCCCCChHH
Q psy5178 3 ESLRICTSRLSCCSQEH 19 (219)
Q Consensus 3 ~~L~vC~~g~TCCt~~m 19 (219)
.||+-|.....||+.+-
T Consensus 5 phlkrcken~dccskkc 21 (33)
T PF08099_consen 5 PHLKRCKENKDCCSKKC 21 (33)
T ss_dssp -TTSB-SSGGGBSSS-B
T ss_pred HHHHHHHhccchHHHHh
Confidence 58999987889998763
No 24
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=20.35 E-value=3.2e+02 Score=22.52 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhhhccC-CCC-CCchhhhccchh--hhchHHHHhhhHHHHHHHH
Q psy5178 125 EVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQ-YTF-DDNPRQLGSPME--AHGGEPQLLNCKSDSSKSF 200 (219)
Q Consensus 125 ~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~~~~l-~PF-Gd~P~~L~~ql~--AaR~f~qaL~~g~eVv~~~ 200 (219)
..-.+=|...|.-+|+.++|.|.+...+.|=+-.... .| +|| .=....|.+-=+ .+-.++-+|.==.|++.-.
T Consensus 66 ~Pt~kdf~~I~~fL~~~idp~~~~~~k~eeev~~~lK---~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~ 142 (157)
T PF03801_consen 66 SPTQKDFVEIFNFLFRQIDPNFKFGKKFEEEVPFLLK---ALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYE 142 (157)
T ss_dssp S--HHHHHHHHHHHHHTTSTT---SSTHHHHHHHHHH---HTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcCHHHHHHHHHH---HhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3555678888999998899999887666655555666 55 688 433333333222 6788999998888888764
Q ss_pred H
Q psy5178 201 T 201 (219)
Q Consensus 201 t 201 (219)
.
T Consensus 143 ~ 143 (157)
T PF03801_consen 143 E 143 (157)
T ss_dssp H
T ss_pred H
Confidence 4
Done!