Query psy5178
Match_columns 219
No_of_seqs 122 out of 184
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:20:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3odn_A Dally-like protein; alp 100.0 1.9E-60 6.7E-65 450.5 17.7 191 3-217 32-228 (506)
2 4acr_A Glypican-1; proteoglyca 100.0 6.9E-60 2.4E-64 445.2 12.8 189 3-215 56-248 (478)
3 3odn_A Dally-like protein; alp 57.8 1.2E+02 0.0042 28.7 12.0 112 76-201 74-205 (506)
4 2fji_1 Exocyst complex compone 50.0 36 0.0012 30.4 6.8 38 123-161 243-284 (399)
5 1fwo_A Oryzain beta chain; bet 41.6 8.4 0.00029 23.7 0.8 15 2-16 4-18 (35)
6 2igp_A Retinoblastoma-associat 36.7 92 0.0031 23.6 6.3 68 126-197 44-116 (120)
7 1g26_A Granulin A, HGA; granul 33.4 4 0.00014 24.4 -1.5 15 2-16 4-18 (31)
8 1i8x_A Granulin-1; two beta-ha 33.4 9 0.00031 22.8 0.0 15 2-16 4-18 (30)
9 2ot3_A RAB5 GDP/GTP exchange f 24.7 3E+02 0.01 23.3 8.2 66 98-163 52-122 (274)
10 4acr_A Glypican-1; proteoglyca 21.9 4.9E+02 0.017 24.3 15.0 76 122-200 131-226 (478)
11 2jyt_A Granulin-5, granulin C; 21.3 25 0.00085 24.7 0.5 14 2-15 5-18 (69)
No 1
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-60 Score=450.51 Aligned_cols=191 Identities=41% Similarity=0.672 Sum_probs=171.6
Q ss_pred CCCccc--CCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHH
Q psy5178 3 ESLRIC--TSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLS 80 (219)
Q Consensus 3 ~~L~vC--~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~ 80 (219)
+||||| |+||||||++||++|+++|+++||++|++++++|+++|.++|++|| |||++||+
T Consensus 32 ~~LrvC~~pqg~TCCT~~MEe~l~~~s~~~~e~~l~~~s~~L~~~l~~~~~~F~------------------e~F~~LL~ 93 (506)
T 3odn_A 32 RVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFK------------------DIFTALLK 93 (506)
T ss_dssp ------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
T ss_pred CcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 799999 9999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q psy5178 81 TSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIF 160 (219)
Q Consensus 81 ~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~ 160 (219)
.||++|++||+++||+||.||+++|.+||++|++||.|+++||+++|++||++|||+||+++||+|+|++||++||++++
T Consensus 94 ~Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v~~Ff~~Lf~~~f~llnp~~~~s~dY~eCl~~~~ 173 (506)
T 3odn_A 94 ESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHM 173 (506)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeeec
Q psy5178 161 TVLNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL 217 (219)
Q Consensus 161 ~~~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~~ 217 (219)
+ +|+||||+|++|+.+|+ |||+|+|||++|+|||+++. .+..+..|.-+|+
T Consensus 174 ~---~l~PFGdvP~kL~~ql~Rs~~AaR~f~QaL~~g~eVv~~~~---~v~ls~eC~rALm 228 (506)
T 3odn_A 174 K---ELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVL---NVRLNADCTGALT 228 (506)
T ss_dssp H---HHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----THHHHHHH
T ss_pred H---hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCcHHHHHHH
Confidence 9 99999999999999999 99999999999999999965 4556666765543
No 2
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=100.00 E-value=6.9e-60 Score=445.17 Aligned_cols=189 Identities=28% Similarity=0.459 Sum_probs=145.2
Q ss_pred CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS 82 (219)
Q Consensus 3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s 82 (219)
+||||||+||||||++||++|+++|+++||++|+++|++|+++|.+++++|| +||++||+.|
T Consensus 56 ~~L~vCp~g~TCCT~~MEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~F~------------------e~F~~Ll~~s 117 (478)
T 4acr_A 56 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD------------------DHFQHLLNDS 117 (478)
T ss_dssp TTCSSSCSSSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred CccCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178 83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162 (219)
Q Consensus 83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~ 162 (219)
|++|++||+++||.||.||+++|.+||++|++||.|+++||+++|++||++|||+||+++||+|.+++||++|++++++
T Consensus 118 e~~l~~~F~~~Yg~ly~q~~~~f~~LF~~L~~Yy~G~~v~Lee~v~~Ff~~Lf~~~f~~lnp~~~~s~~y~~Cl~~~~~- 196 (478)
T 4acr_A 118 ERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQAE- 196 (478)
T ss_dssp HHHHHHHCTTTSTHHHHHHHHHHHHHHHHHHHHHTTSCCCC------CHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceee
Q psy5178 163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIH 215 (219)
Q Consensus 163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~ 215 (219)
+|+||||+|++|+.||+ |||+|+|||++|+||||++. + +.....|.-+
T Consensus 197 --~l~PFGd~P~~l~~ql~rs~~aaR~f~qaL~~g~eVvn~~~-~--v~~s~eC~ra 248 (478)
T 4acr_A 197 --ALRPFGEAPRELRLRATRAFVAARSFVQGLGVASDVVRKVA-Q--VPLGPECSRA 248 (478)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T--CCCCHHHHHH
T ss_pred --hhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--CCCCcHHHHH
Confidence 99999999999999999 99999999999999999954 3 3444455443
No 3
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=57.81 E-value=1.2e+02 Score=28.71 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH-HHhccCC----CCCh
Q psy5178 76 KELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMF-TVLNAQY----TFDD 150 (219)
Q Consensus 76 ~~LL~~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f-~llnp~~----~~~~ 150 (219)
+.+|..-.+.+++.|..+-...-..-..+|...|+.|..-.. .+|.+||..+- ...+.+. -+++
T Consensus 74 ~~~l~~~~~~F~e~F~~LL~~Se~~l~~mF~~tYg~ly~qn~-----------~~f~~LF~~L~~Yy~g~~v~Lee~v~~ 142 (506)
T 3odn_A 74 SGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNS-----------YVFSDLFKELETYFANGRVDLLEVMDK 142 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHTH-----------HHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 455666666666666666655555555666666665544322 45555555554 2333333 2456
Q ss_pred HHHHHHHHHHhhhccCCCCCCchhhhc-------cchh--------hhchHHHHhhhHHHHHHHHH
Q psy5178 151 KISTLYQKIFTVLNAQYTFDDNPRQLG-------SPME--------AHGGEPQLLNCKSDSSKSFT 201 (219)
Q Consensus 151 dy~eCl~~~~~~~~~l~PFGd~P~~L~-------~ql~--------AaR~f~qaL~~g~eVv~~~t 201 (219)
.+..-+...+.++ .|--+++.+-. .++. -.....+||..++-.++.+.
T Consensus 143 Ff~~Lf~~~f~ll---np~~~~s~dY~eCl~~~~~~l~PFGdvP~kL~~ql~Rs~~AaR~f~QaL~ 205 (506)
T 3odn_A 143 FFNTLYQKMFTVL---NTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTYGQALT 205 (506)
T ss_dssp HHHHHHHHHHHHH---TTTSCCCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCCCChHHHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888844 44444443321 1222 34455666666666655543
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=50.05 E-value=36 Score=30.40 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHhccCCCCC---hHHHHHHHHHHh
Q psy5178 123 LIEVMDNFFSTLYQKMF-TVLNAQYTFD---DKISTLYQKIFT 161 (219)
Q Consensus 123 Le~~l~~FF~~Lf~~~f-~llnp~~~~~---~dy~eCl~~~~~ 161 (219)
.+..++.+.+.+..... .+++ +..|. ....+++.+-.+
T Consensus 243 ~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~ 284 (399)
T 2fji_1 243 FVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFE 284 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHH
Confidence 44455555555555544 3455 66677 778888777776
No 5
>1fwo_A Oryzain beta chain; beta-hairpin stack fold, granulin/epithelin-like protein repeats, hydrolase; NMR {Synthetic} SCOP: g.3.16.1
Probab=41.60 E-value=8.4 Score=23.72 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=12.5
Q ss_pred CCCCcccCCCCCCCC
Q psy5178 2 CESLRICTSRLSCCS 16 (219)
Q Consensus 2 ~~~L~vC~~g~TCCt 16 (219)
|.+-..||.|.|||-
T Consensus 4 CD~~~sCP~~~TCCc 18 (35)
T 1fwo_A 4 CDDNFSCPAGSTCSS 18 (35)
T ss_dssp SSSSCCCCSSSEECC
T ss_pred CCCcccCCCCCcEEe
Confidence 677788999999983
No 6
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=36.67 E-value=92 Score=23.57 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHhhhccC-CCCCCchhhhccchh---hhchHHHHhhhHHHHH
Q psy5178 126 VMDNFFSTLYQKMFTVLNAQYTFD-DKISTLYQKIFTVLNAQ-YTFDDNPRQLGSPME---AHGGEPQLLNCKSDSS 197 (219)
Q Consensus 126 ~l~~FF~~Lf~~~f~llnp~~~~~-~dy~eCl~~~~~~~~~l-~PFGd~P~~L~~ql~---AaR~f~qaL~~g~eVv 197 (219)
.-..=|...|.-+|+.++|.|.++ ..+.|=+-.... +| +||- +.+.-..-+. .+-.++-+|.==.|.+
T Consensus 44 Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK---~L~YP~~-isKS~L~a~g~pHsWp~~L~~L~WLvel~ 116 (120)
T 2igp_A 44 PSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFK---DLGYPFA-LSKSSMYTVGAPHTWPHIVAALVWLIDCI 116 (120)
T ss_dssp CCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHH---HTTCCSC-CCHHHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHH---HcCCCce-eCHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 334557788899999999999984 566666666666 66 6885 3322222222 4556777766555544
No 7
>1g26_A Granulin A, HGA; granulin/epithelin protein repeats, beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1
Probab=33.39 E-value=4 Score=24.43 Aligned_cols=15 Identities=33% Similarity=1.052 Sum_probs=11.5
Q ss_pred CCCCcccCCCCCCCC
Q psy5178 2 CESLRICTSRLSCCS 16 (219)
Q Consensus 2 ~~~L~vC~~g~TCCt 16 (219)
|.+-..||.|.|||-
T Consensus 4 Cd~~~~Cp~~~TCC~ 18 (31)
T 1g26_A 4 CDMEVICPDGYTCCR 18 (31)
T ss_dssp EETTEEECTTEEEEE
T ss_pred CCCCCccCCCCeecC
Confidence 445667999999985
No 8
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=33.38 E-value=9 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.860 Sum_probs=12.1
Q ss_pred CCCCcccCCCCCCCC
Q psy5178 2 CESLRICTSRLSCCS 16 (219)
Q Consensus 2 ~~~L~vC~~g~TCCt 16 (219)
|..-..||.|.|||-
T Consensus 4 CD~~~~CP~~~TCC~ 18 (30)
T 1i8x_A 4 CDAATICPDGTTCSL 18 (30)
T ss_dssp TTTTCCCCTTEEEEE
T ss_pred CCCCccCCCCCeeec
Confidence 556677999999995
No 9
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=24.72 E-value=3e+02 Score=23.30 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHhhHHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHhhh
Q psy5178 98 YEQNSFLFTDLFEELEKYFSR----GNVDLIEVMDNFFSTLYQKMFTVLNAQY-TFDDKISTLYQKIFTVL 163 (219)
Q Consensus 98 y~qn~~~f~~LF~dL~~Y~~G----~~~~Le~~l~~FF~~Lf~~~f~llnp~~-~~~~dy~eCl~~~~~~~ 163 (219)
..+-+.+|.+||..+..-+.. +...++.+..-.=.-++.++|..+-+.. ..+...-.-+++.+..+
T Consensus 52 ~~e~~~~v~~f~~~~~~~l~~~~~~s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L 122 (274)
T 2ot3_A 52 IEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL 122 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH
Confidence 345567788888887766652 2222333333333335566664432222 22233334456666533
No 10
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=21.90 E-value=4.9e+02 Score=24.31 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH-h----ccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhc-------cchh--------
Q psy5178 122 DLIEVMDNFFSTLYQKMFTV-L----NAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG-------SPME-------- 181 (219)
Q Consensus 122 ~Le~~l~~FF~~Lf~~~f~l-l----np~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~-------~ql~-------- 181 (219)
.|-..-.++|.+||..+=.- . |..--+++.+..-+...+. -+.|-...|.+-. .++.
T Consensus 131 ~ly~q~~~~f~~LF~~L~~Yy~G~~v~Lee~v~~Ff~~Lf~~~f~---~lnp~~~~s~~y~~Cl~~~~~~l~PFGd~P~~ 207 (478)
T 4acr_A 131 ELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWARLLERLFK---QLHPQLLLPDDYLDCLGKQAEALRPFGEAPRE 207 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCC------CHHHHHHHC---------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HcCCCCCCChHHHHHHHHHHHhhcCcccchHH
Confidence 33333345555665555422 2 2222466678888888888 5556555554322 2222
Q ss_pred hhchHHHHhhhHHHHHHHH
Q psy5178 182 AHGGEPQLLNCKSDSSKSF 200 (219)
Q Consensus 182 AaR~f~qaL~~g~eVv~~~ 200 (219)
-+....+||..++-.++.+
T Consensus 208 l~~ql~rs~~aaR~f~qaL 226 (478)
T 4acr_A 208 LRLRATRAFVAARSFVQGL 226 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555544
No 11
>2jyt_A Granulin-5, granulin C; epithelin, human, stack of hairpins, alternative splicing, cytokine, glycoprotein, polymorphism, secreted; NMR {Homo sapiens} PDB: 2jyu_A
Probab=21.31 E-value=25 Score=24.73 Aligned_cols=14 Identities=36% Similarity=1.165 Sum_probs=7.1
Q ss_pred CCCCcccCCCCCCC
Q psy5178 2 CESLRICTSRLSCC 15 (219)
Q Consensus 2 ~~~L~vC~~g~TCC 15 (219)
|.+-..||.|.|||
T Consensus 5 Cd~~~~CP~~~TCC 18 (69)
T 2jyt_A 5 CDNVSSCPSSDTCC 18 (69)
T ss_dssp SCSSCCCCSSCEEE
T ss_pred CCCccCCCCCCeec
Confidence 34444555555555
Done!