Query psy5178
Match_columns 219
No_of_seqs 122 out of 184
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 19:20:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i8ya_ g.3.16.1 (A:) N-termin 76.7 0.3 2.2E-05 27.0 0.4 16 2-17 2-17 (28)
2 d1g26a_ g.3.16.1 (A:) N-termin 74.8 0.16 1.2E-05 29.0 -1.0 13 4-16 6-18 (31)
3 d1fwoa_ g.3.16.1 (A:) Oryzain 33.0 6.6 0.00048 22.8 0.8 16 1-16 3-18 (35)
4 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 26.9 14 0.001 22.1 1.7 20 114-133 25-44 (46)
5 d1kr7a_ a.1.1.4 (A:) Nerve tis 24.4 42 0.0031 22.6 4.2 14 124-137 5-18 (110)
6 d1pi1a_ a.29.7.1 (A:) Mob1a {H 20.0 16 0.0011 28.2 1.1 74 71-144 80-167 (185)
7 d1c6wa_ g.3.6.2 (A:) Maurocalc 15.8 11 0.0008 21.1 -0.6 17 2-18 4-20 (33)
8 d2arca_ b.82.4.1 (A:) Regulato 15.3 1.6E+02 0.012 20.0 5.9 42 101-142 120-161 (161)
9 d2v0fa1 d.76.2.1 (A:2629-2715) 15.3 40 0.0029 23.0 2.2 30 142-181 47-76 (87)
10 d1gvha1 a.1.1.2 (A:1-146) Flav 14.9 1.8E+02 0.013 19.9 6.7 34 101-146 6-39 (146)
No 1
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=76.70 E-value=0.3 Score=27.02 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=13.2
Q ss_pred CCCCcccCCCCCCCCh
Q psy5178 2 CESLRICTSRLSCCSQ 17 (219)
Q Consensus 2 ~~~L~vC~~g~TCCt~ 17 (219)
|..--|||.|.|||-+
T Consensus 2 cda~ticpdgttc~ls 17 (28)
T d1i8ya_ 2 CDAATICPDGTTCSLS 17 (28)
T ss_dssp CTTTTCCCTTCEEEEC
T ss_pred CccceEcCCCCeEecc
Confidence 6677899999999953
No 2
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.80 E-value=0.16 Score=28.96 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.2
Q ss_pred CCcccCCCCCCCC
Q psy5178 4 SLRICTSRLSCCS 16 (219)
Q Consensus 4 ~L~vC~~g~TCCt 16 (219)
.--+||-|+|||-
T Consensus 6 ~e~sCPdg~TCCr 18 (31)
T d1g26a_ 6 MEVICPDGYTCCR 18 (31)
T ss_dssp TTEEECTTEEEEE
T ss_pred cEEecCCCCeeEe
Confidence 3457999999994
No 3
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=33.02 E-value=6.6 Score=22.77 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=12.7
Q ss_pred CCCCCcccCCCCCCCC
Q psy5178 1 MCESLRICTSRLSCCS 16 (219)
Q Consensus 1 ~~~~L~vC~~g~TCCt 16 (219)
.|.+-.-||.+.|||-
T Consensus 3 vCD~~~sCp~~~TCCC 18 (35)
T d1fwoa_ 3 VCDDNFSCPAGSTCSS 18 (35)
T ss_dssp CSSSSCCCCSSSEECC
T ss_pred cccCcccCCCCCcEEE
Confidence 4677788999999874
No 4
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.88 E-value=14 Score=22.10 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.6
Q ss_pred HHhccCCCCHHHHHHHHHHH
Q psy5178 114 KYFSRGNVDLIEVMDNFFST 133 (219)
Q Consensus 114 ~Y~~G~~~~Le~~l~~FF~~ 133 (219)
.|+.-.+-||+.+|+.||+.
T Consensus 25 ~~Le~~~w~Le~Ai~~yfe~ 44 (46)
T d1v92a_ 25 FFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHHhc
Confidence 56666778999999999974
No 5
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=24.36 E-value=42 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q psy5178 124 IEVMDNFFSTLYQK 137 (219)
Q Consensus 124 e~~l~~FF~~Lf~~ 137 (219)
..+..+||.+||..
T Consensus 5 a~v~~~ff~~LF~~ 18 (110)
T d1kr7a_ 5 AAVVDDFYQELFKA 18 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44566788888887
No 6
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.00 E-value=16 Score=28.23 Aligned_cols=74 Identities=12% Similarity=0.371 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHhHHHHHHHh-----hHHHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHH--HHH
Q psy5178 71 LPGFFKELLSTSKKSFH--DMFKRTYGIIYEQN-----SFLFTDLFEELEKYFSR-----GNVDLIEVMDNFFST--LYQ 136 (219)
Q Consensus 71 ~~e~F~~LL~~se~~l~--~mF~~tYg~ly~qn-----~~~f~~LF~dL~~Y~~G-----~~~~Le~~l~~FF~~--Lf~ 136 (219)
-++|...+++.+++.++ .+|..-+|.-.++| ..+|+.||.-...-|.. ..++++.-++..|.. +|-
T Consensus 80 Ap~Yi~~~~~w~~~~l~de~iFPtk~g~~fP~~F~~~vk~I~rrLfRVyaHiY~~Hf~~~~~l~~e~hlNt~FkHF~~f~ 159 (185)
T d1pi1a_ 80 APKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFV 159 (185)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 34888888888888887 67776666543332 23344444333333322 136888889999987 777
Q ss_pred HHHHHhcc
Q psy5178 137 KMFTVLNA 144 (219)
Q Consensus 137 ~~f~llnp 144 (219)
+-|.+|.+
T Consensus 160 ~ef~Li~~ 167 (185)
T d1pi1a_ 160 QEFNLIDR 167 (185)
T ss_dssp HHHTCSCG
T ss_pred HHhCCCCh
Confidence 77888854
No 7
>d1c6wa_ g.3.6.2 (A:) Maurocalcin {Scorpio maurus [TaxId: 53956]}
Probab=15.84 E-value=11 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.895 Sum_probs=13.6
Q ss_pred CCCCcccCCCCCCCChH
Q psy5178 2 CESLRICTSRLSCCSQE 18 (219)
Q Consensus 2 ~~~L~vC~~g~TCCt~~ 18 (219)
..||+-|.....||+.+
T Consensus 4 lphlkrcken~dccskk 20 (33)
T d1c6wa_ 4 LPHLKLCKENKDCCSKK 20 (33)
T ss_dssp CSSCCEESSGGGSTTCC
T ss_pred hHHHHHHHhccchHHHH
Confidence 36899998778899864
No 8
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}
Probab=15.28 E-value=1.6e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5178 101 NSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVL 142 (219)
Q Consensus 101 n~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~ll 142 (219)
....+..+|.+|.+...+.+..-++++...+..|+-+.++.|
T Consensus 120 ~~~~i~~l~~~l~~e~~~~~~~~e~l~~~lL~~LLir~~~~~ 161 (161)
T d2arca_ 120 HQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAI 161 (161)
T ss_dssp THHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcC
Confidence 346688889999888888888888888888888888887643
No 9
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.26 E-value=40 Score=22.95 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=24.8
Q ss_pred hccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhccchh
Q psy5178 142 LNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPME 181 (219)
Q Consensus 142 lnp~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~~ql~ 181 (219)
.||.|.++++-.+|+.+. |..|+.+..+|.
T Consensus 47 ~nP~y~V~P~w~~~vk~~----------g~lpe~~~~R~l 76 (87)
T d2v0fa1 47 ENPEFAVAPDWTDIVKQS----------GFVPESMFDRLL 76 (87)
T ss_dssp HCTTEEECHHHHHHHHHH----------SSSCGGGGGGSC
T ss_pred HCCCceeCccHHHHHhhc----------CcCcHHHhhccc
Confidence 499999999999998754 567888877775
No 10
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.94 E-value=1.8e+02 Score=19.93 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCC
Q psy5178 101 NSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQY 146 (219)
Q Consensus 101 n~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~ 146 (219)
-..++++.+..|.. +-++....||.+||.. +|.+
T Consensus 6 ~i~~vk~tw~~l~~-------~~~~~~~~fy~rlF~~-----~P~~ 39 (146)
T d1gvha1 6 TIATVKATIPLLVE-------TGPKLTAHFYDRMFTH-----NPEL 39 (146)
T ss_dssp HHHHHHHHHHHHHT-------THHHHHHHHHHHHHHH-----CGGG
T ss_pred HHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHH-----CHHH
Confidence 34566777766654 3456777888888877 6655
Done!