RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5178
(219 letters)
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 119 bits (298), Expect = 1e-31
Identities = 72/180 (40%), Positives = 96/180 (53%), Gaps = 23/180 (12%)
Query: 3 ESLRICTSRL--SCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMC 60
LR C S +CC+ E + RQ + H + + +S IL S+A +F
Sbjct: 32 RVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKF------- 84
Query: 61 GHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGN 120
F LL S+ F+ MF RTYG+IYE+NS++F+DLF+ELE YF+ G
Sbjct: 85 -----------KDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGR 133
Query: 121 VDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPM 180
VDL+EVMD FF+TLYQKMFTVLN QYTFD+ + L F D P +L +
Sbjct: 134 VDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKP---FGDVPDKLSVQI 190
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 113 bits (283), Expect = 1e-29
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
E LRIC +CC+ E E ++ N + LR + L ++L ++ FD
Sbjct: 56 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107
Query: 63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
F+ LL+ S+++ F +G +Y QN+ F DL+ EL Y+ N+
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPM 180
L E + F++ L +++F L+ Q D K L F + PR+L
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQAEALRP---FGEAPRELRLRA 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 34/249 (13%), Positives = 73/249 (29%), Gaps = 71/249 (28%)
Query: 8 CTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSS----IL-------KS-------R 49
RL + + +NV R LRQ L L ++ K+
Sbjct: 115 QRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 50 AHRFDALSTMCGH----SFRELRR--SLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSF 103
+++ M + + ++ ++LL ++ + I +
Sbjct: 173 SYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-- 228
Query: 104 LFTDLFEELEKYFS--RGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDK----ISTLYQ 157
+ EL + L+ V+ N + NA F+ ++T ++
Sbjct: 229 ---SIQAELRRLLKSKPYENCLL-VLLNVQNA------KAWNA---FNLSCKILLTTRFK 275
Query: 158 KIFTVLNAQYTF----DDNPRQLGS------------------PMEAHGGEPQLLNCKSD 195
++ L+A T D + L P E P+ L+ ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 196 SSKSFTIRF 204
S + +
Sbjct: 336 SIRDGLATW 344
Score = 34.1 bits (77), Expect = 0.037
Identities = 19/161 (11%), Positives = 52/161 (32%), Gaps = 32/161 (19%)
Query: 14 CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHR--FDALSTMCGHSFRELRRSL 71
E+E ++H I Y+ + ++ + + + GH + +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFYSHI----GHHLKNIEHP- 487
Query: 72 PGFFKELLSTSKKSFHDM-F---K-RTYGIIYEQNSFLFTDLFEELEKY----------F 116
E ++ + F D F K R + + + + ++L+ Y +
Sbjct: 488 -----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKY 541
Query: 117 SRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQ 157
R +++ + L +T L + + +++
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL-LRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 9e-05
Identities = 54/309 (17%), Positives = 88/309 (28%), Gaps = 133/309 (43%)
Query: 4 SLRICTSRLSCCSQEHEISV----H---NVIRQSYDKHLRQTLYSL------SSILKSRA 50
S R T LS S EH + V + +++ ++K L + ++ +
Sbjct: 5 STRPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 51 HRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMF-------------------- 90
+F L G+ + S G F ++L+ F + +
Sbjct: 63 -KF--L----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 91 -KRTYGII--Y-------------EQNSFLFT--------------------DLFEELEK 114
+T +I Y + NS LF D FEEL
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 115 YFS--RGNV-DLIEVMDNFFSTL----------YQKMFTVL----NAQYTFDDK------ 151
+ V DLI+ S L + + +L N T D
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 152 IS----TLYQKIFTVLNAQY-----TFDDNPRQLGSPMEAHGGEPQLLNC---------- 192
IS + Q L A Y P +L S ++
Sbjct: 236 ISCPLIGVIQ-----L-AHYVVTAKLLGFTPGELRSYLKG------ATGHSQGLVTAVAI 283
Query: 193 -KSDSSKSF 200
++DS +SF
Sbjct: 284 AETDSWESF 292
Score = 38.9 bits (90), Expect = 0.001
Identities = 37/263 (14%), Positives = 71/263 (26%), Gaps = 100/263 (38%)
Query: 23 VHNVIRQSYDKHLRQTLYSLSSILKS-------------RAHR---FDALSTMCGHS--- 63
+H + + TL ++K+ + F A+ G++
Sbjct: 101 IHALA-AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE--GNAQLV 157
Query: 64 ------------FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEE 111
F ELR +L T D+ K + + E +
Sbjct: 158 AIFGGQGNTDDYFEELR--------DLYQTYHVLVGDLIKFSAETLSE-----LIRTTLD 204
Query: 112 LEKYFSRGNVDLIEVMDN--------FFST---------LYQKMFTVLNAQYT------- 147
EK F++G ++++E ++N + + + Q L A Y
Sbjct: 205 AEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-----L-AHYVVTAKLLG 257
Query: 148 -----FDDKISTLYQKIFTVLNAQYT--------FDDNPRQ-------LGSPMEAHGGEP 187
+ ++ A F + R+ +G + P
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYP 315
Query: 188 QLLNCKSDSSKSFTIRFGVKNPM 210
S S GV +PM
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPM 338
Score = 33.9 bits (77), Expect = 0.045
Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 36/140 (25%)
Query: 72 PGFFKELLSTS---KKSFHDM---FKRTYGI----IYEQN----SFLFT-----DLFEEL 112
G +L TS + ++ FK TYG I N + F + E
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 113 EKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFT---VLNAQY-T 168
VD + F + + YTF + L FT + +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHS-----TSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 169 FDDNPRQLGSPMEAHGGEPQ 188
F+D +++ G P
Sbjct: 1744 FED--------LKSKGLIPA 1755
Score = 28.5 bits (63), Expect = 2.1
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 11/39 (28%)
Query: 35 LRQT------L----YSLSSILKSRAHRFDALSTMCGHS 63
L T L + LKS+ A +T GHS
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGL-IPADATFAGHS 1763
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma
apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Length = 1056
Score = 32.7 bits (73), Expect = 0.093
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 16 SQEHEISVHNVIRQSYDKHLRQTLYS-LSSILKSRAHRFDALSTMCGHSFRELRRSLPGF 74
S V +R+ + + +YS + S+ +S F ++ C + + L
Sbjct: 544 SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLG---SKL 600
Query: 75 FKELLSTSKKSFHDMFKRTYGI--------IYEQNSFLFTDLFEELEKYFSRGNVDLIEV 126
+ SK D F I + L + ++ D++E
Sbjct: 601 DRLGCRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEF 660
>1yyv_A Putative transcriptional regulator; reductive methylation, D
lysine, structural genomics, PSI; HET: MLY; 2.35A
{Salmonella typhimurium} SCOP: a.4.5.69
Length = 131
Score = 26.9 bits (59), Expect = 3.6
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 64 FRELRRSLPGFFKELLSTSKKSFHD---MFKRTYGIIYEQNSFLFTDLFEELE 113
F +LRR + G + +L+ S ++ + + +Y ++ + T L E++
Sbjct: 51 FSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 27.0 bits (59), Expect = 4.9
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 45 ILKSRAHR----FDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQ 100
I + +AHR D L TM F ++ E++ + R I E+
Sbjct: 211 IPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ----HEVVGQPAIHRQEHPHRVPVHIAER 266
Query: 101 NSFLFTDLFEELEKYFSRGNVDLIEVMD 128
+ L ++++ V+L+E+
Sbjct: 267 VGYDVEATLHRLMQHWTPRQVELLELFT 294
>3r7p_A Ribosomal protein 3/homing endonuclease-like FUSI protein; homing
endonuclease, gene therapy, hydrolase-DNA complex; HET:
DNA; 2.70A {Leptographium truncatum}
Length = 315
Score = 27.1 bits (59), Expect = 5.1
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 1/115 (0%)
Query: 36 RQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYG 95
L S+ L + D + + S +EL + F K L T K++ + +FK+ +
Sbjct: 61 VTILKSIREYLGAGIITSDIDARIRFESLKELEVVINHFDKYPLITQKRADYLLFKKAF- 119
Query: 96 IIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDD 150
+ + L + ++ + N+ L E + F ++ Q D
Sbjct: 120 YLIKNKEHLTEEGLNQILTLKASLNLGLSEELKEAFPNTIPAERLLVTGQEIPDS 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.8 bits (60), Expect = 5.1
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 13/58 (22%)
Query: 64 FRELRRSLPGFFKEL--------LSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELE 113
F +LR L F K + KK D +ELE
Sbjct: 8 FGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEI-----KEKDVDKALDELE 60
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobio
glycosylated protein, hydrolase; HET: NAG CBI; 2.30A
{Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A*
4ovw_A* 1ovw_A*
Length = 411
Score = 26.8 bits (59), Expect = 6.7
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 132 STLYQKMFTVLNAQYTFDDKISTL 155
Y+ M + +++FD ++ L
Sbjct: 114 KKKYE-MLHLTGTEFSFDVEMEKL 136
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET:
VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A
3gd1_I 1c9i_A 1c9l_A
Length = 365
Score = 26.4 bits (58), Expect = 8.7
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 174 RQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL 217
R++ P+E H + ++ +S F V+ G +HI+
Sbjct: 189 RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 232
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
Length = 463
Score = 26.4 bits (57), Expect = 8.9
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 105 FTDLFEELEKYFSRGNVDLIEVMDNFFSTL 134
+ +++ + + L + +FF++L
Sbjct: 24 RYEQMSKIDNLLADKSSSLSGSLQSFFTSL 53
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller
coated-PITS, membrane PR; 2.60A {Rattus norvegicus}
SCOP: a.118.1.4 b.69.6.1
Length = 494
Score = 26.5 bits (58), Expect = 9.6
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 174 RQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL 217
R++ P+E H + ++ +S F V+ G +HI+
Sbjct: 188 RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231
>1azo_A MUTH; endonuclease, DNA repair, hydrolase; 1.70A {Escherichia coli}
SCOP: c.52.1.14 PDB: 2azo_A
Length = 232
Score = 26.1 bits (57), Expect = 9.8
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 61 GHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFL-FTDLFEELE--KYFS 117
G++ EL + E L K + + G F L EL+ S
Sbjct: 29 GYTLGELAALVGLVTPENLKRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDS 88
Query: 118 RGN---------VDLIEVMDNFF--STLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQ 166
G L + S + K+ VL + I +++ + L
Sbjct: 89 LGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRVLWIPVEGEASIPLAQRRVGSPLLWS 148
Query: 167 YTFDD 171
++
Sbjct: 149 PNEEE 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.402
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,232,931
Number of extensions: 180759
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 35
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)