RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5178
         (219 letters)



>d2fd5a2 a.121.1.1 (A:77-180) Probable transcriptional regulator
           PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 27.0 bits (60), Expect = 0.75
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 27  IRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSL--PGFFKELLSTSKK 84
            R+   +H+   + SL+   +        L  M G     L R+L        +L  +K+
Sbjct: 44  FREVLSRHVEIMVTSLAESPEETDVALADLVLMIGGL--ALARALGPGELSDRVLRAAKQ 101

Query: 85  S 85
           +
Sbjct: 102 A 102


>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
           rotavirus [TaxId: 10969]}
          Length = 160

 Score = 26.3 bits (58), Expect = 2.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 80  STSKKSFHDMFKRTYGIIYEQNSFLFTD 107
           S ++  F D+ K T    Y Q   L + 
Sbjct: 70  SQTQWKFIDVVKTTQNGSYSQYGPLQST 97


>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 114

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 62  HSFRELRRSLPGFFKELLSTSKKSFHD---MFKRTYGIIYEQNSFLFTDLFEELE 113
           H F +LRR + G  +++L+ S ++      + + +Y ++     +  T L E++ 
Sbjct: 38  HRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 92


>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 108

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 64  FRELRRSLPGFFKELLSTSKKSFHD---MFKRTYGIIYEQNSFLFTDLFEELE 113
             EL R+L G  + +L+   +       + + ++  +  +  +  T     L 
Sbjct: 35  NGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 87


>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
           thermoacetica [TaxId: 1525]}
          Length = 549

 Score = 25.5 bits (56), Expect = 5.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 166 QYTFDDNPRQLGSP 179
           QY+F D+  +LG P
Sbjct: 485 QYSFSDDMTKLGRP 498


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 25.3 bits (55), Expect = 6.1
 Identities = 7/51 (13%), Positives = 17/51 (33%)

Query: 104 LFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKIST 154
            +  +  +  K  + G+  +        ++L  +         T  DK +T
Sbjct: 312 TYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSAT 362


>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
           {Helicobacter pylori [TaxId: 210]}
          Length = 349

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 86  FHDMFKRTYGIIYEQNSFLFTDL-----FEELEKYFSRGNVDLI 124
            + +  + Y I   QN   F+DL          K  S  N   +
Sbjct: 47  LYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRV 90


>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14,
           HRV-14 [TaxId: 12131]}
          Length = 460

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 5/48 (10%), Positives = 14/48 (29%)

Query: 104 LFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDK 151
            +  +  +  K  + G+  ++         +   +        T  DK
Sbjct: 311 AYKGIDLDKLKILAYGDDLIVSYPYELDPQVLATLGKNYGLTITPPDK 358


>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 102

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 64  FRELRRSLPGFFKELLSTSKKSFHD---MFKRTYGIIYEQNSFLFTDLFEELE 113
           + EL+R++PG  +++L    K       + K+ Y  +  +  +  T L E++ 
Sbjct: 36  YGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 88


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 24.9 bits (53), Expect = 9.8
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 105 FTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQK 137
           FT   E      +    +   V+D+FFS   Q+
Sbjct: 541 FTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQ 573


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,065
Number of extensions: 36967
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 16
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)