BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy518
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q177H0|NCBP2_AEDAE Nuclear cap-binding protein subunit 2 OS=Aedes aegypti GN=Cbp20
PE=3 SV=1
Length = 159
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 76/81 (93%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
MT+V +PSV LS YRDQHFKGSR EQE+LLR TSTLY+GNLS+YTTEEQ++ELFS+CGDI
Sbjct: 1 MTSVHTPSVALSKYRDQHFKGSRHEQERLLRLTSTLYIGNLSFYTTEEQIHELFSRCGDI 60
Query: 61 KRIIMGLDKYKKTPCGFCFLE 81
+RI+MGLDK+KKTPCGFCF+E
Sbjct: 61 RRIVMGLDKFKKTPCGFCFVE 81
>sp|B0W939|NCBP2_CULQU Nuclear cap-binding protein subunit 2 OS=Culex quinquefasciatus
GN=Cbp20 PE=3 SV=1
Length = 160
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 76/81 (93%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
MT+V +PSV LS YRDQHFKGSR EQE+LLR +STLY+GNLS+YTTEEQ++ELFS+CGDI
Sbjct: 1 MTSVHTPSVALSKYRDQHFKGSRHEQERLLRNSSTLYIGNLSFYTTEEQIHELFSRCGDI 60
Query: 61 KRIIMGLDKYKKTPCGFCFLE 81
+RI+MGLDK+KKTPCGFCF+E
Sbjct: 61 RRIVMGLDKFKKTPCGFCFVE 81
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae
GN=Cbp20 PE=3 SV=3
Length = 163
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 75/81 (92%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
+ +V +PSV LS YRDQHFKGSR EQEKLLR +STLYVGNLS+YTTEEQ++ELFS+CGD+
Sbjct: 5 IQSVHTPSVSLSKYRDQHFKGSRHEQEKLLRVSSTLYVGNLSFYTTEEQIHELFSRCGDV 64
Query: 61 KRIIMGLDKYKKTPCGFCFLE 81
+RIIMGLDK+KKTPCGFCF+E
Sbjct: 65 RRIIMGLDKFKKTPCGFCFVE 85
>sp|Q1HE01|NCBP2_BOMMO Nuclear cap-binding protein subunit 2 OS=Bombyx mori PE=2 SV=1
Length = 154
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 75/77 (97%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ S+E+SSYRDQHFKGSR+EQEKLL+ +STLY+GNLS+YTTEEQ+YEL+S+CGDI+R+I
Sbjct: 1 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMGNLSFYTTEEQIYELYSRCGDIRRVI 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4KCD5|NCBP2_DROMO Nuclear cap-binding protein subunit 2 OS=Drosophila mojavensis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 73/77 (94%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
+S S++LSSYRDQHFKGSR+EQE+ LR +STLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MSASIDLSSYRDQHFKGSRSEQERSLRDSSTLYVGNLSFYTTEEQIHELFSRCGDVRIIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B3P0D7|NCBP2_DROER Nuclear cap-binding protein subunit 2 OS=Drosophila erecta
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 72/77 (93%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
+S SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MSASVELSSYRDQHFKGSRSEQERSLRGSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B7P877|NCBP2_IXOSC Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis
GN=Cbp20 PE=3 SV=1
Length = 152
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 72/74 (97%)
Query: 8 SVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67
SV+LSSYRDQHFKGSR+EQE+LLR ++TLYVGN+S+YTTEEQ+YELFSKCGD+K++IMGL
Sbjct: 2 SVDLSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGL 61
Query: 68 DKYKKTPCGFCFLE 81
D++ KTPCGFCF+E
Sbjct: 62 DRFHKTPCGFCFVE 75
>sp|B4PL68|NCBP2_DROYA Nuclear cap-binding protein subunit 2 OS=Drosophila yakuba
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 72/77 (93%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
+S SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MSASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B3LYP1|NCBP2_DROAN Nuclear cap-binding protein subunit 2 OS=Drosophila ananassae
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 73/77 (94%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
+S SV+LSSYRDQHFKGSR+EQE+ LR ++TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MSTSVDLSSYRDQHFKGSRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRVIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4JUT1|NCBP2_DROGR Nuclear cap-binding protein subunit 2 OS=Drosophila grimshawi
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 73/77 (94%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ SV+LSSYRDQHFKGSR+EQE+ LR ++TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MTASVDLSSYRDQHFKGSRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4LZ88|NCB2B_DROVI Nuclear cap-binding protein subunit 2B OS=Drosophila virilis
GN=Cbp20-B PE=3 SV=1
Length = 154
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 73/77 (94%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ S++LSSYRDQHFKGSR+EQE+ LR ++TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MTASIDLSSYRDQHFKGSRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4QV17|NCBP2_DROSI Nuclear cap-binding protein subunit 2 OS=Drosophila simulans
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 7 PSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66
SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+MG
Sbjct: 3 ASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMG 62
Query: 67 LDKYKKTPCGFCFLE 81
LDKYKKTPCGFCF+E
Sbjct: 63 LDKYKKTPCGFCFVE 77
>sp|B4IBA4|NCBP2_DROSE Nuclear cap-binding protein subunit 2 OS=Drosophila sechellia
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 7 PSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66
SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+MG
Sbjct: 3 ASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMG 62
Query: 67 LDKYKKTPCGFCFLE 81
LDKYKKTPCGFCF+E
Sbjct: 63 LDKYKKTPCGFCFVE 77
>sp|Q9V3L6|NCBP2_DROME Nuclear cap-binding protein subunit 2 OS=Drosophila melanogaster
GN=Cbp20 PE=1 SV=1
Length = 154
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 7 PSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66
SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+MG
Sbjct: 3 ASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMG 62
Query: 67 LDKYKKTPCGFCFLE 81
LDKYKKTPCGFCF+E
Sbjct: 63 LDKYKKTPCGFCFVE 77
>sp|B4NB54|NCBP2_DROWI Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 72/77 (93%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
+S SVELSSYRDQHFKGSR+EQE+ L+ + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MSNSVELSSYRDQHFKGSRSEQERSLKESCTLYVGNLSFYTTEEQIHELFSRCGDVRLIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|Q293V6|NCBP2_DROPS Nuclear cap-binding protein subunit 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Cbp20 PE=3 SV=1
Length = 154
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 72/77 (93%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ SVELSSYRDQHFKGSR+EQE+ L+ + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MATSVELSSYRDQHFKGSRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4GLK8|NCBP2_DROPE Nuclear cap-binding protein subunit 2 OS=Drosophila persimilis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 72/77 (93%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ SVELSSYRDQHFKGSR+EQE+ L+ + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+
Sbjct: 1 MATSVELSSYRDQHFKGSRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|B4M205|NCB2A_DROVI Nuclear cap-binding protein subunit 2-A OS=Drosophila virilis
GN=Cbp20-A PE=3 SV=1
Length = 154
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 71/77 (92%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64
++ S+ELSSYRDQH+KGSR EQE+ LR +STLYVGNLS+YT EEQ++ELFS+CGD++ I+
Sbjct: 1 MTTSIELSSYRDQHYKGSRFEQERSLRDSSTLYVGNLSFYTAEEQIHELFSRCGDVRMIV 60
Query: 65 MGLDKYKKTPCGFCFLE 81
MGLDKYKKTPCGFCF+E
Sbjct: 61 MGLDKYKKTPCGFCFVE 77
>sp|Q8JGR6|NCBP2_DANRE Nuclear cap-binding protein subunit 2 OS=Danio rerio GN=ncbp2
PE=2 SV=2
Length = 155
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 72/82 (87%), Gaps = 1/82 (1%)
Query: 1 MTTVISPS-VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGD 59
+ + S S V++S YRDQHFKG+R EQEKLL+ ++TLYVGNLS+YTTEEQ++ELF+KCGD
Sbjct: 5 LNALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQSATLYVGNLSFYTTEEQVHELFAKCGD 64
Query: 60 IKRIIMGLDKYKKTPCGFCFLE 81
+KRII+GLDK KKT CGFCF+E
Sbjct: 65 VKRIIIGLDKIKKTACGFCFVE 86
>sp|C1BY64|NCBP2_ESOLU Nuclear cap-binding protein subunit 2 OS=Esox lucius GN=ncbp2
PE=2 SV=1
Length = 155
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 67/73 (91%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
V++S YRDQHFKG+R EQEKLL+ ++TLYVGNLS+YTTEEQ+YELFSK GD+KRII+GLD
Sbjct: 14 VDVSQYRDQHFKGNRYEQEKLLKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLD 73
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 74 KVKKTACGFCFVE 86
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+S YRDQHF+GSR QEK L+ +STLYVGNLS+YTTEEQ+ ELFSKCGD+KRI+MGLDK
Sbjct: 19 EISQYRDQHFRGSRQLQEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
Query: 70 YKKTPCGFCFLE 81
KKTPCGFCF+E
Sbjct: 79 IKKTPCGFCFVE 90
>sp|C0H859|NCBP2_SALSA Nuclear cap-binding protein subunit 2 OS=Salmo salar GN=ncbp2
PE=2 SV=1
Length = 155
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 1 MTTVISPS-VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGD 59
+ + S S V++S YRDQHFKG+R EQEKLL+ +TLYVGNLS+YTTEEQ+YELFSK GD
Sbjct: 5 LNALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQANTLYVGNLSFYTTEEQVYELFSKSGD 64
Query: 60 IKRIIMGLDKYKKTPCGFCFLE 81
+KRII+GLDK KKT CGFCF+E
Sbjct: 65 VKRIIIGLDKVKKTACGFCFVE 86
>sp|Q5ZKR5|NCBP2_CHICK Nuclear cap-binding protein subunit 2 OS=Gallus gallus GN=NCBP2
PE=2 SV=1
Length = 168
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 65/72 (90%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+S YRDQHF+GS+ QEK L+ +STLYVGNLS+YTTEEQ+ ELFSKCGD+KRI+MGLDK
Sbjct: 19 EISRYRDQHFRGSKKLQEKFLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
Query: 70 YKKTPCGFCFLE 81
KKTPCGFCF+E
Sbjct: 79 IKKTPCGFCFVE 90
>sp|P52298|NCBP2_HUMAN Nuclear cap-binding protein subunit 2 OS=Homo sapiens GN=NCBP2
PE=1 SV=1
Length = 156
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>sp|Q3ZBJ1|NCBP2_BOVIN Nuclear cap-binding protein subunit 2 OS=Bos taurus GN=NCBP2 PE=2
SV=1
Length = 156
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>sp|B1WC40|NCBP2_RAT Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus
GN=Ncbp2 PE=2 SV=1
Length = 156
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>sp|Q9CQ49|NCBP2_MOUSE Nuclear cap-binding protein subunit 2 OS=Mus musculus GN=Ncbp2
PE=1 SV=1
Length = 156
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>sp|P52299|NCBP2_XENLA Nuclear cap-binding protein subunit 2 OS=Xenopus laevis GN=ncbp2
PE=2 SV=2
Length = 153
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
V+LS YRDQHF+G+R++QE LL+ + TLYVGNLS+YTTEEQ++ELFSK GD+KRI+MGLD
Sbjct: 12 VDLSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLD 71
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 72 KVKKTACGFCFVE 84
>sp|A2SW84|NCBP2_SINCH Nuclear cap-binding protein subunit 2 OS=Siniperca chuatsi
GN=ncbp2 PE=2 SV=1
Length = 165
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
+++S YRDQHFKG+R +QEKLL+ + TLYVGNLS+YTTEEQ++ELFSK GD+KRII+GLD
Sbjct: 14 IDVSQYRDQHFKGNRYDQEKLLKQSHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLD 73
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 74 KVKKTACGFCFVE 86
>sp|Q6DES0|NCBP2_XENTR Nuclear cap-binding protein subunit 2 OS=Xenopus tropicalis
GN=ncbp2 PE=2 SV=1
Length = 153
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G+R++QE LL+ + TLYVGNLS+YTTEEQ++ELFSK GD+K+I+MGLD
Sbjct: 12 VELSQYRDQHFRGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLD 71
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 72 KIKKTACGFCFVE 84
>sp|Q93594|NCBP2_CAEEL Nuclear cap-binding protein subunit 2 OS=Caenorhabditis elegans
GN=ncbp-2 PE=3 SV=2
Length = 158
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 67/79 (84%), Gaps = 1/79 (1%)
Query: 3 TVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR 62
T+ +P E+S+YRDQ ++G+ +QE LRT+ TLYVGNLSYYT E+Q+YELF + GD++R
Sbjct: 7 TLDNPK-EISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRR 65
Query: 63 IIMGLDKYKKTPCGFCFLE 81
+IMGLD++KKTPCGFCF+E
Sbjct: 66 VIMGLDRFKKTPCGFCFVE 84
>sp|A8Y1R8|NCBP2_CAEBR Nuclear cap-binding protein subunit 2 OS=Caenorhabditis briggsae
GN=ncbp-2 PE=3 SV=2
Length = 157
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 63/72 (87%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
++S+YRDQ ++GS +QE LRT+ TLYVGNLSYYT E+Q+YELF + GD++R+IMGLD+
Sbjct: 13 DISAYRDQRYQGSVRDQELALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDR 72
Query: 70 YKKTPCGFCFLE 81
+KKTPCGFCF+E
Sbjct: 73 FKKTPCGFCFVE 84
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 65/80 (81%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
M ++ +LS+YRD+ F G++ E ++ LR ++T+Y+GN+S+YTTEEQLYELFS+ G+I
Sbjct: 1 MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60
Query: 61 KRIIMGLDKYKKTPCGFCFL 80
K+IIMGLDK KTPCGFCF+
Sbjct: 61 KKIIMGLDKNTKTPCGFCFV 80
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
M ++ +LS+YRD+ F G++ E E L+ + T+YVGN+S+YTTEEQ YELFS+ G+I
Sbjct: 1 MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60
Query: 61 KRIIMGLDKYKKTPCGFCFL 80
++IIMGLDK KTPCGFCF+
Sbjct: 61 RKIIMGLDKNSKTPCGFCFI 80
>sp|A6PVI3|NCB2L_HUMAN Nuclear cap-binding protein subunit 2-like OS=Homo sapiens
GN=NCBP2L PE=3 SV=1
Length = 153
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 6 SPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
P++ELS YRD F G + +QEKLL+ +STL +GNLS+YTTEE+++ELFS+ DI+ I M
Sbjct: 11 DPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELFSR-SDIRNIFM 69
Query: 66 GLDKYKKTPCGFCFLE 81
GLDK KKT CGFCF+E
Sbjct: 70 GLDKIKKTACGFCFVE 85
>sp|Q54KR9|NCBP2_DICDI Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum
GN=ncbp2 PE=3 SV=1
Length = 234
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ +ST+YVG LS+YTTEEQLYELFSKCG+IKRIIMGLD+ +KTPCGFCF+E
Sbjct: 27 AIDKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVE 79
>sp|Q08920|NCBP2_YEAST Nuclear cap-binding protein subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CBC2 PE=1 SV=1
Length = 208
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 46/48 (95%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
+ST+YVGNLS+YT+EEQ+YELFSKCG IKRIIMGLD++K TPCGFCF+
Sbjct: 45 SSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFI 92
>sp|Q754W7|NCBP2_ASHGO Nuclear cap-binding protein subunit 2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=CBC2 PE=3 SV=1
Length = 218
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 47/49 (95%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
T++T+YVGNLS+YT+EEQLYELFSKCG I++IIMGLD++K TPCGFCF+
Sbjct: 44 TSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFI 92
>sp|Q9P383|NCBP2_SCHPO Nuclear cap-binding protein subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cbc2 PE=3 SV=1
Length = 182
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 48/52 (92%)
Query: 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++ ++ +YVGNLS+YTTEEQ+Y LFSKCG+I+RIIMG+D++ KTPCGFCF+E
Sbjct: 28 VKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVE 79
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DKY P GF ++E
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIE 210
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 23 RAEQEKLLRTTSTL------------YVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY 70
RA QE+L T L YVGN+ Y T E+L F+ CG + R+ + DK+
Sbjct: 32 RAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKF 91
Query: 71 KKTPCGFCFLE 81
P GF ++E
Sbjct: 92 TGHPKGFAYIE 102
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T+YVGNLSY TE L +F+ G++KR+++ D+ GF F+E
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVE 48
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 215
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIE 209
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
S +EK+ ++YVGN+ Y + E+L FS+CG++ R+ + DK+ P G+ ++E
Sbjct: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIE 210
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
AE++K + S +YVGN+ Y +T + L FS CG I RI + DK+ P G+ ++E
Sbjct: 84 AEEKKEIDKRS-VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 140
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++YVGNLSY T+E + +F++ G +KR+++ D+ GF F+E
Sbjct: 2 SIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVE 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,878,250
Number of Sequences: 539616
Number of extensions: 954846
Number of successful extensions: 3558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2913
Number of HSP's gapped (non-prelim): 697
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)