Query psy518
Match_columns 81
No_of_seqs 165 out of 1499
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 19:22:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0121|consensus 99.8 6.2E-20 1.4E-24 104.7 4.5 80 2-81 5-84 (153)
2 KOG0149|consensus 99.7 1.8E-16 4E-21 97.9 5.2 50 32-81 11-60 (247)
3 PLN03134 glycine-rich RNA-bind 99.6 1.1E-15 2.3E-20 89.6 6.8 51 31-81 32-82 (144)
4 KOG0126|consensus 99.6 5.4E-16 1.2E-20 93.1 2.0 58 23-80 25-82 (219)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 8.7E-15 1.9E-19 95.1 6.7 50 32-81 2-51 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.3E-14 2.8E-19 94.3 6.4 49 33-81 269-317 (352)
7 TIGR01659 sex-lethal sex-letha 99.5 4.3E-14 9.4E-19 92.7 7.4 53 29-81 103-155 (346)
8 KOG0113|consensus 99.5 1.7E-14 3.7E-19 91.9 5.2 51 31-81 99-149 (335)
9 TIGR01645 half-pint poly-U bin 99.5 9.5E-14 2.1E-18 96.1 7.2 53 29-81 103-155 (612)
10 PF00076 RRM_1: RNA recognitio 99.4 3.6E-13 7.8E-18 69.1 5.2 45 36-81 1-45 (70)
11 TIGR01659 sex-lethal sex-letha 99.4 3.5E-13 7.7E-18 88.4 6.1 50 32-81 192-241 (346)
12 TIGR01622 SF-CC1 splicing fact 99.4 5.4E-13 1.2E-17 89.5 6.3 51 31-81 87-137 (457)
13 KOG0122|consensus 99.4 7.3E-13 1.6E-17 82.6 6.2 50 31-80 187-236 (270)
14 PLN03213 repressor of silencin 99.4 5.5E-13 1.2E-17 90.2 5.8 47 31-81 8-54 (759)
15 TIGR01648 hnRNP-R-Q heterogene 99.4 9.3E-13 2E-17 90.9 6.5 50 31-81 56-105 (578)
16 TIGR01645 half-pint poly-U bin 99.4 1E-12 2.2E-17 91.1 6.2 50 32-81 203-252 (612)
17 PF14259 RRM_6: RNA recognitio 99.4 1.8E-12 3.8E-17 67.0 5.5 45 36-81 1-45 (70)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.7E-12 3.7E-17 88.0 6.6 51 31-81 293-343 (509)
19 TIGR01628 PABP-1234 polyadenyl 99.4 1.4E-12 3.1E-17 89.5 6.3 47 35-81 2-48 (562)
20 COG0724 RNA-binding proteins ( 99.3 3.7E-12 8E-17 78.4 6.7 49 33-81 115-163 (306)
21 PLN03120 nucleic acid binding 99.3 3.1E-12 6.7E-17 80.8 6.0 47 32-81 3-49 (260)
22 KOG0117|consensus 99.3 2.3E-12 4.9E-17 85.8 5.3 65 17-81 66-131 (506)
23 PLN03121 nucleic acid binding 99.3 5.3E-12 1.1E-16 78.9 6.0 48 31-81 3-50 (243)
24 TIGR01622 SF-CC1 splicing fact 99.3 7E-12 1.5E-16 84.1 6.4 50 32-81 185-234 (457)
25 KOG0144|consensus 99.3 3.3E-12 7.1E-17 84.9 3.6 50 31-80 32-81 (510)
26 KOG0127|consensus 99.3 8.6E-12 1.9E-16 84.9 5.6 50 31-80 290-339 (678)
27 KOG0124|consensus 99.3 2.6E-12 5.6E-17 84.4 2.3 51 31-81 111-161 (544)
28 KOG0131|consensus 99.2 7.5E-12 1.6E-16 75.3 3.5 51 31-81 7-57 (203)
29 KOG0148|consensus 99.2 1.2E-11 2.7E-16 78.3 4.2 48 33-80 62-109 (321)
30 TIGR01628 PABP-1234 polyadenyl 99.2 3.3E-11 7.1E-16 82.9 6.5 51 30-81 282-332 (562)
31 KOG4205|consensus 99.2 1.8E-11 4E-16 79.2 4.8 50 32-81 5-54 (311)
32 KOG0108|consensus 99.2 2.8E-11 6E-16 81.3 4.9 48 34-81 19-66 (435)
33 KOG0111|consensus 99.2 9.6E-12 2.1E-16 77.1 1.7 51 31-81 8-58 (298)
34 KOG4207|consensus 99.2 4.5E-11 9.8E-16 73.4 4.2 50 31-80 11-60 (256)
35 smart00362 RRM_2 RNA recogniti 99.2 1.4E-10 3E-15 58.7 5.4 45 35-81 1-45 (72)
36 KOG0125|consensus 99.1 5.8E-11 1.3E-15 76.8 4.5 50 30-81 93-142 (376)
37 KOG0130|consensus 99.1 8.1E-11 1.8E-15 68.2 3.9 51 31-81 70-120 (170)
38 KOG0107|consensus 99.1 1.5E-10 3.3E-15 69.3 4.9 45 32-81 9-53 (195)
39 smart00360 RRM RNA recognition 99.1 2.1E-10 4.6E-15 57.8 4.8 44 38-81 1-44 (71)
40 KOG0145|consensus 99.1 3.9E-10 8.5E-15 71.5 5.5 51 31-81 276-326 (360)
41 KOG0147|consensus 99.1 7.2E-11 1.6E-15 80.1 2.3 47 35-81 280-326 (549)
42 KOG0124|consensus 99.1 3.4E-10 7.5E-15 74.5 5.2 54 28-81 205-258 (544)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 4.9E-10 1.1E-14 76.2 5.6 43 33-81 2-44 (481)
44 KOG0144|consensus 99.0 1.2E-10 2.7E-15 77.6 2.3 49 31-80 122-170 (510)
45 KOG0114|consensus 99.0 9.5E-10 2.1E-14 61.2 5.4 46 32-80 17-62 (124)
46 cd00590 RRM RRM (RNA recogniti 99.0 2.5E-09 5.5E-14 54.2 5.6 46 35-81 1-46 (74)
47 KOG0148|consensus 99.0 1.3E-09 2.9E-14 69.2 5.4 47 28-80 159-205 (321)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.1E-09 4.6E-14 73.2 6.2 46 31-81 273-319 (481)
49 KOG0145|consensus 99.0 1.2E-09 2.7E-14 69.3 4.6 50 32-81 40-89 (360)
50 KOG4208|consensus 98.9 1.5E-09 3.2E-14 66.5 4.5 50 32-81 48-98 (214)
51 KOG0105|consensus 98.9 2.5E-09 5.4E-14 65.0 4.5 48 31-81 4-51 (241)
52 KOG0127|consensus 98.9 3.1E-09 6.6E-14 72.8 4.6 49 32-80 4-52 (678)
53 KOG4205|consensus 98.9 5.5E-09 1.2E-13 67.9 5.5 50 32-81 96-145 (311)
54 KOG0415|consensus 98.8 3.4E-09 7.3E-14 69.6 3.9 51 31-81 237-287 (479)
55 KOG0109|consensus 98.8 3.9E-09 8.4E-14 67.7 3.3 35 34-68 3-37 (346)
56 KOG0110|consensus 98.8 3.8E-09 8.3E-14 73.7 2.6 50 32-81 612-661 (725)
57 KOG0131|consensus 98.7 7.5E-09 1.6E-13 62.5 2.9 53 28-80 91-144 (203)
58 TIGR01642 U2AF_lg U2 snRNP aux 98.7 3.7E-08 8E-13 67.0 5.5 46 30-81 172-229 (509)
59 KOG4209|consensus 98.6 4.4E-08 9.5E-13 61.5 4.0 54 28-81 96-149 (231)
60 TIGR01648 hnRNP-R-Q heterogene 98.6 8.2E-08 1.8E-12 66.8 5.4 43 31-81 231-275 (578)
61 KOG0146|consensus 98.6 8.7E-08 1.9E-12 61.2 4.7 53 28-80 280-332 (371)
62 KOG0146|consensus 98.6 3.6E-08 7.9E-13 62.9 2.8 49 31-80 17-65 (371)
63 KOG0116|consensus 98.6 1.1E-07 2.5E-12 63.9 4.7 50 32-81 287-336 (419)
64 KOG0123|consensus 98.5 2.1E-07 4.6E-12 61.9 4.5 43 36-81 79-121 (369)
65 KOG0117|consensus 98.5 1.4E-07 2.9E-12 63.5 3.5 42 31-80 257-298 (506)
66 smart00361 RRM_1 RNA recogniti 98.5 3.2E-07 7E-12 47.5 3.8 35 47-81 2-43 (70)
67 KOG0123|consensus 98.4 7.4E-07 1.6E-11 59.3 4.5 51 30-81 267-317 (369)
68 KOG0109|consensus 98.4 1.7E-07 3.6E-12 60.3 1.4 39 30-68 75-113 (346)
69 KOG4212|consensus 98.4 8.8E-07 1.9E-11 59.9 4.8 49 32-81 43-92 (608)
70 KOG0132|consensus 98.3 1.1E-06 2.4E-11 62.5 4.1 43 32-80 420-462 (894)
71 KOG0226|consensus 98.2 9.4E-07 2E-11 56.0 2.7 49 32-80 189-237 (290)
72 KOG4849|consensus 98.2 5.1E-07 1.1E-11 59.5 1.1 47 34-80 81-129 (498)
73 KOG4454|consensus 98.2 6E-07 1.3E-11 55.9 1.2 49 31-81 7-55 (267)
74 PF04059 RRM_2: RNA recognitio 98.1 1.4E-05 3E-10 44.1 5.8 47 34-80 2-50 (97)
75 KOG0533|consensus 98.1 6.6E-06 1.4E-10 52.0 4.8 48 32-80 82-129 (243)
76 KOG4661|consensus 98.1 4.9E-06 1.1E-10 58.0 4.3 52 30-81 402-453 (940)
77 KOG4206|consensus 98.1 1.2E-05 2.6E-10 50.0 5.3 46 32-80 8-57 (221)
78 KOG0153|consensus 98.1 4.6E-06 1E-10 54.8 3.7 45 31-81 226-270 (377)
79 KOG0120|consensus 98.0 7.4E-06 1.6E-10 56.3 3.1 51 31-81 287-337 (500)
80 KOG4210|consensus 97.9 6.2E-06 1.3E-10 53.3 2.1 50 32-81 183-233 (285)
81 KOG1548|consensus 97.9 4.7E-05 1E-09 50.2 5.5 49 31-80 132-188 (382)
82 KOG0151|consensus 97.8 3.3E-05 7.1E-10 54.9 4.0 45 25-69 166-210 (877)
83 KOG0110|consensus 97.8 3.2E-05 7E-10 54.7 3.7 48 34-81 516-566 (725)
84 KOG4212|consensus 97.7 2.6E-05 5.7E-10 53.0 3.0 47 27-76 530-576 (608)
85 KOG0106|consensus 97.7 3.1E-05 6.7E-10 48.2 2.9 40 34-81 2-41 (216)
86 KOG0147|consensus 97.7 5.8E-06 1.3E-10 56.8 -0.6 51 31-81 177-227 (549)
87 PF13893 RRM_5: RNA recognitio 97.6 0.0001 2.2E-09 36.2 3.2 27 50-81 1-27 (56)
88 KOG4660|consensus 97.5 8.3E-05 1.8E-09 51.4 3.1 47 30-81 72-118 (549)
89 KOG4211|consensus 97.4 0.00058 1.3E-08 46.9 5.3 48 31-81 8-55 (510)
90 KOG4206|consensus 97.1 0.0011 2.5E-08 41.3 4.6 47 30-81 143-189 (221)
91 KOG0129|consensus 96.9 0.0017 3.7E-08 44.8 4.5 35 31-66 257-291 (520)
92 KOG1457|consensus 96.9 0.0013 2.9E-08 41.5 3.4 45 33-81 210-254 (284)
93 KOG1995|consensus 96.9 0.0013 2.7E-08 43.6 3.2 51 30-80 63-121 (351)
94 KOG0128|consensus 96.8 0.00094 2E-08 48.4 2.1 48 33-81 736-783 (881)
95 KOG0129|consensus 96.7 0.0044 9.6E-08 42.9 5.0 53 28-80 365-418 (520)
96 PF08777 RRM_3: RNA binding mo 96.6 0.0051 1.1E-07 34.3 3.9 35 34-68 2-36 (105)
97 KOG3152|consensus 96.5 0.0052 1.1E-07 39.3 3.9 40 32-71 73-112 (278)
98 KOG1190|consensus 96.4 0.0034 7.3E-08 42.6 2.9 37 32-68 27-63 (492)
99 KOG1457|consensus 96.3 0.011 2.3E-07 37.5 4.4 50 31-80 32-82 (284)
100 KOG0115|consensus 96.1 0.006 1.3E-07 39.1 2.7 46 34-80 32-77 (275)
101 KOG4211|consensus 95.5 0.038 8.3E-07 38.3 4.7 48 32-80 102-150 (510)
102 KOG0105|consensus 94.8 0.088 1.9E-06 32.6 4.5 37 32-68 114-150 (241)
103 KOG0128|consensus 94.8 0.0015 3.2E-08 47.5 -3.6 49 33-81 667-715 (881)
104 KOG1855|consensus 94.4 0.07 1.5E-06 36.6 3.7 38 31-68 229-266 (484)
105 PF14605 Nup35_RRM_2: Nup53/35 93.7 0.11 2.5E-06 25.3 2.9 32 34-66 2-33 (53)
106 KOG2314|consensus 93.7 0.065 1.4E-06 38.0 2.6 48 33-81 58-111 (698)
107 KOG1365|consensus 93.6 0.084 1.8E-06 36.0 2.9 50 31-81 278-330 (508)
108 PF08675 RNA_bind: RNA binding 93.2 0.63 1.4E-05 25.1 5.4 34 33-68 9-42 (87)
109 KOG1365|consensus 91.3 0.66 1.4E-05 31.8 4.8 45 35-80 163-211 (508)
110 KOG1190|consensus 91.2 0.53 1.2E-05 32.4 4.4 33 31-63 412-444 (492)
111 KOG2193|consensus 90.6 0.28 6E-06 34.0 2.6 24 34-57 2-25 (584)
112 KOG4676|consensus 90.5 0.2 4.2E-06 34.3 1.8 35 33-67 7-41 (479)
113 KOG4307|consensus 90.0 0.22 4.8E-06 36.4 1.9 49 32-81 433-482 (944)
114 KOG0112|consensus 90.0 0.13 2.7E-06 38.3 0.7 39 30-68 369-407 (975)
115 KOG0106|consensus 89.6 0.23 5E-06 31.2 1.6 34 31-64 97-130 (216)
116 KOG1456|consensus 89.2 1.3 2.8E-05 30.3 4.9 42 28-69 282-324 (494)
117 KOG1456|consensus 88.0 1.3 2.9E-05 30.3 4.3 39 30-68 28-66 (494)
118 KOG0112|consensus 86.9 1.3 2.7E-05 33.3 4.0 36 30-65 452-487 (975)
119 PF09707 Cas_Cas2CT1978: CRISP 85.1 1.9 4.1E-05 23.3 3.2 44 33-79 25-68 (86)
120 KOG2253|consensus 82.5 0.53 1.1E-05 34.0 0.6 38 28-65 35-72 (668)
121 PF03467 Smg4_UPF3: Smg-4/UPF3 82.5 1.7 3.7E-05 26.4 2.7 30 31-60 5-35 (176)
122 PRK11558 putative ssRNA endonu 80.4 3.2 6.8E-05 23.0 3.0 45 33-80 27-71 (97)
123 KOG4307|consensus 79.6 6.8 0.00015 29.1 5.2 49 31-80 864-914 (944)
124 COG5175 MOT2 Transcriptional r 79.0 2.1 4.6E-05 29.0 2.4 34 34-67 115-154 (480)
125 KOG4454|consensus 76.6 0.59 1.3E-05 29.7 -0.6 48 32-80 79-130 (267)
126 PF10567 Nab6_mRNP_bdg: RNA-re 74.9 2.4 5.3E-05 28.0 1.8 38 32-69 14-51 (309)
127 PF05172 Nup35_RRM: Nup53/35/4 74.1 4.8 0.0001 22.3 2.7 32 32-64 5-36 (100)
128 KOG4676|consensus 72.6 0.5 1.1E-05 32.4 -1.7 34 34-67 152-185 (479)
129 KOG4210|consensus 72.5 1.3 2.8E-05 28.9 0.2 49 32-80 87-135 (285)
130 COG0030 KsgA Dimethyladenosine 72.1 4.9 0.00011 26.0 2.7 36 33-68 95-130 (259)
131 KOG2416|consensus 68.5 2.2 4.7E-05 30.9 0.6 33 31-63 442-475 (718)
132 KOG4410|consensus 68.4 13 0.00029 24.8 4.1 33 33-65 330-363 (396)
133 COG0724 RNA-binding proteins ( 66.6 12 0.00027 22.5 3.7 40 30-69 222-261 (306)
134 PF10309 DUF2414: Protein of u 66.3 16 0.00034 18.5 3.7 36 33-69 5-43 (62)
135 TIGR01873 cas_CT1978 CRISPR-as 65.1 12 0.00027 20.2 3.0 45 33-80 25-70 (87)
136 KOG4008|consensus 63.7 8 0.00017 24.9 2.4 35 28-62 35-69 (261)
137 PRK00274 ksgA 16S ribosomal RN 58.4 13 0.00027 23.9 2.7 34 35-68 107-140 (272)
138 KOG2891|consensus 57.8 10 0.00023 25.2 2.2 36 32-67 148-195 (445)
139 PHA02531 20 portal vertex prot 57.5 6.7 0.00015 27.8 1.4 39 33-75 281-319 (514)
140 PF07292 NID: Nmi/IFP 35 domai 57.0 8.3 0.00018 20.9 1.4 25 31-55 50-74 (88)
141 PF15513 DUF4651: Domain of un 54.4 29 0.00062 17.6 3.6 18 48-65 9-26 (62)
142 KOG4660|consensus 53.7 13 0.00028 26.7 2.2 48 33-80 388-436 (549)
143 PTZ00338 dimethyladenosine tra 53.7 14 0.00031 24.2 2.4 34 35-68 103-136 (294)
144 PF00398 RrnaAD: Ribosomal RNA 52.1 16 0.00034 23.3 2.3 34 32-65 96-131 (262)
145 PF07230 Peptidase_S80: Bacter 51.8 13 0.00028 26.4 2.1 37 35-75 280-316 (501)
146 smart00596 PRE_C2HC PRE_C2HC d 50.9 35 0.00076 17.7 3.5 33 48-80 2-35 (69)
147 PF13046 DUF3906: Protein of u 49.6 28 0.00061 17.8 2.6 34 45-80 30-63 (64)
148 PF11411 DNA_ligase_IV: DNA li 49.0 16 0.00035 16.5 1.5 16 43-58 19-34 (36)
149 PF15063 TC1: Thyroid cancer p 47.4 13 0.00029 19.7 1.2 27 34-60 26-52 (79)
150 PF11608 Limkain-b1: Limkain b 47.0 25 0.00055 19.1 2.3 29 34-62 3-36 (90)
151 PF14128 DUF4295: Domain of un 46.8 26 0.00056 16.8 2.1 18 61-81 18-35 (47)
152 PF11004 Kdo_hydroxy: 3-deoxy- 45.9 56 0.0012 21.6 4.1 54 23-77 11-65 (281)
153 PF03468 XS: XS domain; Inter 44.9 30 0.00065 19.6 2.5 44 35-81 10-62 (116)
154 TIGR00755 ksgA dimethyladenosi 43.9 43 0.00093 21.1 3.4 25 35-59 96-120 (253)
155 COG0481 LepA Membrane GTPase L 43.1 33 0.00071 24.8 2.9 48 31-79 295-343 (603)
156 PF05189 RTC_insert: RNA 3'-te 41.3 41 0.00088 18.3 2.7 45 35-79 12-61 (103)
157 PF07530 PRE_C2HC: Associated 40.2 54 0.0012 16.7 3.7 33 48-80 2-35 (68)
158 PF15407 Spo7_2_N: Sporulation 39.5 26 0.00057 17.9 1.6 21 28-48 22-42 (67)
159 smart00650 rADc Ribosomal RNA 39.4 63 0.0014 18.9 3.5 23 35-57 79-101 (169)
160 PHA01632 hypothetical protein 36.0 49 0.0011 16.5 2.2 21 36-56 19-39 (64)
161 cd00027 BRCT Breast Cancer Sup 35.5 52 0.0011 15.2 3.2 26 34-59 2-27 (72)
162 COG5584 Predicted small secret 33.4 60 0.0013 18.0 2.5 30 40-69 29-58 (103)
163 PF12157 DUF3591: Protein of u 33.0 67 0.0015 22.7 3.2 40 38-80 358-397 (457)
164 PF14893 PNMA: PNMA 31.8 43 0.00093 22.6 2.0 26 31-56 16-41 (331)
165 PF14112 DUF4284: Domain of un 31.4 68 0.0015 18.2 2.6 19 35-56 3-21 (122)
166 KOG3424|consensus 31.2 1.1E+02 0.0024 17.7 3.5 37 44-80 34-75 (132)
167 PRK05738 rplW 50S ribosomal pr 30.8 95 0.0021 16.8 3.9 34 34-67 20-55 (92)
168 PF00276 Ribosomal_L23: Riboso 30.6 76 0.0017 17.0 2.6 34 35-68 21-56 (91)
169 KOG1574|consensus 29.8 88 0.0019 21.6 3.2 25 36-60 17-42 (375)
170 KOG2068|consensus 29.4 41 0.00089 22.7 1.6 36 34-69 78-116 (327)
171 KOG0120|consensus 27.1 99 0.0022 22.2 3.2 32 50-81 426-460 (500)
172 cd00874 RNA_Cyclase_Class_II R 26.8 90 0.002 20.9 2.9 44 35-80 188-235 (326)
173 PF05023 Phytochelatin: Phytoc 26.0 33 0.00071 21.6 0.7 15 67-81 198-212 (212)
174 PF12385 Peptidase_C70: Papain 25.6 77 0.0017 19.3 2.2 19 44-62 95-113 (166)
175 cd06257 DnaJ DnaJ domain or J- 24.5 86 0.0019 14.3 2.0 18 39-56 6-23 (55)
176 KOG2318|consensus 24.3 1.6E+02 0.0035 21.8 3.9 38 31-68 172-214 (650)
177 KOG2135|consensus 23.0 43 0.00094 23.9 0.9 33 36-68 375-408 (526)
178 PRK06937 type III secretion sy 22.5 72 0.0016 19.6 1.8 45 35-81 134-178 (204)
179 KOG2855|consensus 21.1 2.1E+02 0.0046 19.5 3.8 27 32-58 60-86 (330)
180 PF14811 TPD: Protein of unkno 20.9 99 0.0021 18.2 2.0 19 47-65 100-118 (139)
181 PF00226 DnaJ: DnaJ domain; I 20.7 1.1E+02 0.0023 14.6 1.9 18 39-56 6-23 (64)
182 PF10281 Ish1: Putative stress 20.5 1E+02 0.0022 13.5 1.7 15 45-59 4-18 (38)
183 smart00457 MACPF membrane-atta 20.0 63 0.0014 19.5 1.1 20 39-58 31-50 (194)
No 1
>KOG0121|consensus
Probab=99.80 E-value=6.2e-20 Score=104.66 Aligned_cols=80 Identities=65% Similarity=1.173 Sum_probs=75.3
Q ss_pred ccccCCCccCccccccCCCCChHHHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 2 TTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+...+.....+.|+++++.++..++......+++||||||++.++|++|.++|+.+|+|.+|.+-.|+.+..++||||||
T Consensus 5 ~~~~~~~~~~s~Yr~~~f~gt~~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVe 84 (153)
T KOG0121|consen 5 ARSFKRLDELSAYRDRRFRGTDEEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVE 84 (153)
T ss_pred hhhhcCccchhHHHHHHhcCchHHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEE
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG0149|consensus
Probab=99.65 E-value=1.8e-16 Score=97.92 Aligned_cols=50 Identities=28% Similarity=0.505 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.-++||||+|+|.+..+.|+++|++||+|.++.++.|+.||++||||||.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVT 60 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 60 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEE
Confidence 34689999999999999999999999999999999999999999999994
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1.1e-15 Score=89.64 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=48.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+++|||+|||+.+++++|+++|.+||.|.++.++.|+.|++++|||||+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~ 82 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEE
Confidence 457789999999999999999999999999999999999999999999995
No 4
>KOG0126|consensus
Probab=99.58 E-value=5.4e-16 Score=93.11 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=53.8
Q ss_pred hHHHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 23 RAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 23 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...|...-.++..|||||||+..||.+|..+|++||+|..|.+++|+.||+++||||.
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFL 82 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFL 82 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEE
Confidence 3456677788999999999999999999999999999999999999999999999996
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=8.7e-15 Score=95.13 Aligned_cols=50 Identities=26% Similarity=0.429 Sum_probs=47.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+..+|||+|||+.+++++|+++|+.||+|.+|+|++|+.+|+++|||||+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~ 51 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVN 51 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEE
Confidence 35789999999999999999999999999999999999999999999995
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.55 E-value=1.3e-14 Score=94.29 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.+|||+|||+.+++++|+++|++||.|.+++++.|+.||.++|||||+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEE
Confidence 4479999999999999999999999999999999999999999999995
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=4.3e-14 Score=92.67 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=49.7
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+++++++|+++|+.||+|.+|+|+.|+.+++++||||||
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVe 155 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVD 155 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999996
No 8
>KOG0113|consensus
Probab=99.53 E-value=1.7e-14 Score=91.89 Aligned_cols=51 Identities=39% Similarity=0.579 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+-++|||+-|+++++|..|+..|+.||+|++|+||.|+.||+++||||||
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIe 149 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIE 149 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEE
Confidence 466899999999999999999999999999999999999999999999996
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=9.5e-14 Score=96.11 Aligned_cols=53 Identities=32% Similarity=0.514 Sum_probs=49.6
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++||||||++.+++++|+++|.+||.|.+|+++.|+.||+++||||||
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVe 155 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVE 155 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999996
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=3.6e-13 Score=69.06 Aligned_cols=45 Identities=40% Similarity=0.621 Sum_probs=42.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 36 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
|||+|||+++++++|+++|++||.+..+.++.+ .+++++|||||+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~ 45 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVE 45 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEE
Confidence 799999999999999999999999999999998 689999999985
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=3.5e-13 Score=88.40 Aligned_cols=50 Identities=36% Similarity=0.522 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++||.|.++.|+.|+.+|+++||||||
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~ 241 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVR 241 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEE
Confidence 45789999999999999999999999999999999999999999999996
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=5.4e-13 Score=89.45 Aligned_cols=51 Identities=29% Similarity=0.536 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..|.++.|+.+|+++||||||
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVe 137 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVE 137 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEE
Confidence 456799999999999999999999999999999999999999999999996
No 13
>KOG0122|consensus
Probab=99.41 E-value=7.3e-13 Score=82.58 Aligned_cols=50 Identities=36% Similarity=0.483 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.+.++|-|.||+.++++++|+++|.+||.|.++.|++|+.||.+||||||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFV 236 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFV 236 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEE
Confidence 46788999999999999999999999999999999999999999999998
No 14
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=5.5e-13 Score=90.16 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=43.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+.+||||||++.+++++|+..|..||.|.+|.|+ +.|| |||||||
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVE 54 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYID 54 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEE
Confidence 456789999999999999999999999999999999 5677 8999996
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=9.3e-13 Score=90.91 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|++||.|.+++|++| .+|+++|||||+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~ 105 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVT 105 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEE
Confidence 45689999999999999999999999999999999999 799999999995
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.38 E-value=1e-12 Score=91.12 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+||++.+++++|+.+|+.||.|.++++++|+.+|+++|||||+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVe 252 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 252 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEE
Confidence 45789999999999999999999999999999999999999999999995
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=1.8e-12 Score=66.96 Aligned_cols=45 Identities=36% Similarity=0.605 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 36 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
|||+|||+++++++|+++|+.+|.|..+.+..++. |..+|+|||+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~ 45 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVE 45 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEE
Confidence 79999999999999999999999999999999976 9999999995
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.37 E-value=1.7e-12 Score=87.95 Aligned_cols=51 Identities=31% Similarity=0.539 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++||||||
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~ 343 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCE 343 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEE
Confidence 345789999999999999999999999999999999999999999999996
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.37 E-value=1.4e-12 Score=89.54 Aligned_cols=47 Identities=30% Similarity=0.592 Sum_probs=45.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|||||||+++++++|+++|++||.|.+|++.+|+.|++++|||||+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~ 48 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVN 48 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEE
Confidence 69999999999999999999999999999999999999999999995
No 20
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=3.7e-12 Score=78.37 Aligned_cols=49 Identities=47% Similarity=0.745 Sum_probs=47.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+|||+|||+.+++++|+++|..||.+..+.+..|+.+|+++|||||+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~ 163 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVE 163 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEE
Confidence 5899999999999999999999999999999999999999999999985
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.1e-12 Score=80.80 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=42.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.|+. ++|||||+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVt 49 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVT 49 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEE
Confidence 357899999999999999999999999999999998863 47999995
No 22
>KOG0117|consensus
Probab=99.33 E-value=2.3e-12 Score=85.83 Aligned_cols=65 Identities=22% Similarity=0.413 Sum_probs=55.4
Q ss_pred cCCCCChHHHhh-hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 17 QHFKGSRAEQEK-LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 17 ~~~~~~~~~~~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++..+++..++. ..+.++.||||.||.++.|++|..+|++.|.|-+++||+|+.+|.+||||||.
T Consensus 66 rk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVt 131 (506)
T KOG0117|consen 66 RKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVT 131 (506)
T ss_pred cccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEE
Confidence 344444444553 33578999999999999999999999999999999999999999999999983
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=5.3e-12 Score=78.90 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=43.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.+.+|||+||++.+|+++|+++|+.||.|.+|.|++|. ..+|||||+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVt 50 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVT 50 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEE
Confidence 457899999999999999999999999999999999884 445899985
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.30 E-value=7e-12 Score=84.13 Aligned_cols=50 Identities=34% Similarity=0.589 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+|||+|||..+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~ 234 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQ 234 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 36899999999999999999999999999999999999999999999995
No 25
>KOG0144|consensus
Probab=99.27 E-value=3.3e-12 Score=84.90 Aligned_cols=50 Identities=32% Similarity=0.556 Sum_probs=47.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.+.-++|||.+|..++|.+|+.+|++||.|.+|.|++|+.||.++|+|||
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv 81 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFV 81 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEE
Confidence 45568999999999999999999999999999999999999999999998
No 26
>KOG0127|consensus
Probab=99.27 E-value=8.6e-12 Score=84.94 Aligned_cols=50 Identities=40% Similarity=0.529 Sum_probs=47.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..+.+|||+|||++++++.|...|++||+|..+.|+.++.||+++|.|||
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv 339 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFV 339 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEE
Confidence 34589999999999999999999999999999999999999999999998
No 27
>KOG0124|consensus
Probab=99.26 E-value=2.6e-12 Score=84.37 Aligned_cols=51 Identities=31% Similarity=0.516 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.--++||||.++++..|+.|+..|.+||+|++|.+..|+.||++|||||||
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVE 161 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVE 161 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEE
Confidence 445789999999999999999999999999999999999999999999997
No 28
>KOG0131|consensus
Probab=99.24 E-value=7.5e-12 Score=75.30 Aligned_cols=51 Identities=37% Similarity=0.612 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+||||||+..++++.|.++|-+.|+|.++++++|+.+..++||||+|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~E 57 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAE 57 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEE
Confidence 467899999999999999999999999999999999999999999999996
No 29
>KOG0148|consensus
Probab=99.23 E-value=1.2e-11 Score=78.28 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.--+|||.|...++.+.|++.|.+||+|.++++++|..|+++||||||
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFV 109 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFV 109 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEE
Confidence 446999999999999999999999999999999999999999999998
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=3.3e-11 Score=82.91 Aligned_cols=51 Identities=41% Similarity=0.572 Sum_probs=47.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+.+|||+||+..+++++|+++|++||.|.+++++.| .+|+++|||||+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 345678999999999999999999999999999999999 689999999995
No 31
>KOG4205|consensus
Probab=99.22 E-value=1.8e-11 Score=79.24 Aligned_cols=50 Identities=34% Similarity=0.577 Sum_probs=48.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+++|||+|+|.++++.|+.+|.+||+|.+|.+++|+.+++++||+||+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~ 54 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVT 54 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCccccccee
Confidence 67889999999999999999999999999999999999999999999985
No 32
>KOG0108|consensus
Probab=99.20 E-value=2.8e-11 Score=81.34 Aligned_cols=48 Identities=38% Similarity=0.641 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+||||+|+++++++|..+|...|.|..++++.|+.||+++||||+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~ 66 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCE 66 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEe
Confidence 889999999999999999999999999999999999999999999986
No 33
>KOG0111|consensus
Probab=99.17 E-value=9.6e-12 Score=77.06 Aligned_cols=51 Identities=41% Similarity=0.538 Sum_probs=48.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++||||+|..++++.-|...|-+||.|.+|.++.|-+++++|||||||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVe 58 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVE 58 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEE
Confidence 456899999999999999999999999999999999999999999999996
No 34
>KOG4207|consensus
Probab=99.16 E-value=4.5e-11 Score=73.39 Aligned_cols=50 Identities=30% Similarity=0.614 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..-..|-|-||.+-++.++|+.+|++||.|-+|.|+.|+.|+.++|||||
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFV 60 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFV 60 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEE
Confidence 44568999999999999999999999999999999999999999999998
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1.4e-10 Score=58.71 Aligned_cols=45 Identities=49% Similarity=0.698 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|||+|||..+++++|+++|.+||.+..+.+..++ +.++|+|||+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~ 45 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVE 45 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEE
Confidence 48999999999999999999999999999998876 7889999985
No 36
>KOG0125|consensus
Probab=99.15 E-value=5.8e-11 Score=76.81 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=44.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|+|.|||+...+.||+.+|++||.|.+|.|+.+. .-+||||||.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVT 142 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVT 142 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEE
Confidence 3456789999999999999999999999999999999974 4579999994
No 37
>KOG0130|consensus
Probab=99.12 E-value=8.1e-11 Score=68.16 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=48.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++.|||.++...++++++...|..||+|+.+++-.|+.||-.+|||+||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvE 120 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVE 120 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeee
Confidence 467889999999999999999999999999999999999999999999997
No 38
>KOG0107|consensus
Probab=99.11 E-value=1.5e-10 Score=69.33 Aligned_cols=45 Identities=36% Similarity=0.663 Sum_probs=40.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++||||||+..+++.+|+..|..||++..|-|... +.||||||
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVE 53 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVE 53 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEe
Confidence 4688999999999999999999999999999877654 47999997
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=2.1e-10 Score=57.78 Aligned_cols=44 Identities=48% Similarity=0.633 Sum_probs=41.2
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 38 VGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 38 v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
|+|||..+++++|+.+|++||.|..+.+..++.++.++|+|||+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~ 44 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVE 44 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEE
Confidence 57999999999999999999999999999988889999999985
No 40
>KOG0145|consensus
Probab=99.06 E-value=3.9e-10 Score=71.47 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++.|||=||++++.|..|..+|.+||.|..|++++|..|.+.||||||.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVt 326 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 326 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEE
Confidence 357899999999999999999999999999999999999899999999983
No 41
>KOG0147|consensus
Probab=99.06 E-value=7.2e-11 Score=80.14 Aligned_cols=47 Identities=34% Similarity=0.591 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.||||||+++.++++|+.+|++||.|..|.+++|..||.++||||++
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 38999999999999999999999999999999998899999999985
No 42
>KOG0124|consensus
Probab=99.06 E-value=3.4e-10 Score=74.55 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=50.0
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+....-.+|||..++++.++++|+..|+.||+|.+|.+.+++.++.+|||||+|
T Consensus 205 eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiE 258 (544)
T KOG0124|consen 205 EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 258 (544)
T ss_pred HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEE
Confidence 344567899999999999999999999999999999999999889999999997
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=4.9e-10 Score=76.21 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++.|||+|||+.+++++|+++|++||.|.+|.++.+ +||||||
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVe 44 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVE 44 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEE
Confidence 578999999999999999999999999999998854 5899996
No 44
>KOG0144|consensus
Probab=99.03 E-value=1.2e-10 Score=77.55 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...++||||.|+..++|.+++++|.+||.|++|+|.+|. .|.+||+|||
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV 170 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFV 170 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEE
Confidence 457889999999999999999999999999999999995 7999999998
No 45
>KOG0114|consensus
Probab=99.02 E-value=9.5e-10 Score=61.16 Aligned_cols=46 Identities=37% Similarity=0.683 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..+-|||.|||+.+|.++..++|.+||.|..|++-..+. .+|-|||
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFV 62 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFV 62 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEE
Confidence 456799999999999999999999999999999976654 4888997
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.5e-09 Score=54.22 Aligned_cols=46 Identities=48% Similarity=0.683 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|+|+|||..+++++|+.+|+.+|.+..+.+..++.+ .++|+|||+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~ 46 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVE 46 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEE
Confidence 4899999999999999999999999999999988644 778999985
No 47
>KOG0148|consensus
Probab=98.98 E-value=1.3e-09 Score=69.17 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=42.9
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+..++|||||++..++++.|+..|.+||+|.+|++-++ +||+||
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFV 205 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFV 205 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEE
Confidence 44567899999999999999999999999999999999877 589998
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.96 E-value=2.1e-09 Score=73.16 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=41.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+++|||+||++ .+++++|+.+|+.||.|.+|+++.++ +|||||+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~ 319 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIE 319 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEE
Confidence 3567999999998 69999999999999999999998874 6899995
No 49
>KOG0145|consensus
Probab=98.95 E-value=1.2e-09 Score=69.26 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....|.|.-||...|+++++.+|...|+|++|++++|+.+|++-|||||.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVN 89 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 89 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceee
Confidence 44679999999999999999999999999999999999999999999983
No 50
>KOG4208|consensus
Probab=98.94 E-value=1.5e-09 Score=66.47 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKC-GDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...-+|++.+|..+.+.++..+|.+| |.+.++++.+++.||.++||||||
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVE 98 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVE 98 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEE
Confidence 34568999999999999999999998 788999999999999999999997
No 51
>KOG0105|consensus
Probab=98.91 E-value=2.5e-09 Score=64.95 Aligned_cols=48 Identities=35% Similarity=0.575 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||||||.++.+.+|+++|.+||.|..|.|-.. -..-+|||||
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVe 51 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVE 51 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEE
Confidence 45688999999999999999999999999999988332 2346799996
No 52
>KOG0127|consensus
Probab=98.87 E-value=3.1e-09 Score=72.79 Aligned_cols=49 Identities=37% Similarity=0.548 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.+.+|||++||+.++.++|.++|+.+|+|..+.++.++.++.++|||||
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfV 52 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFV 52 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccce
Confidence 4589999999999999999999999999999999999999999999998
No 53
>KOG4205|consensus
Probab=98.87 E-value=5.5e-09 Score=67.88 Aligned_cols=50 Identities=32% Similarity=0.596 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+||||+||.++++++++++|++||.|..+.++.|..+.+++||+||.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 46689999999999999999999999999999999999999999999983
No 54
>KOG0415|consensus
Probab=98.84 E-value=3.4e-09 Score=69.61 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++.+-|||..|.+.++.++|.-+|+.||.|..|.+++|+.||.+-.|||||
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiE 287 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIE 287 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeee
Confidence 567789999999999999999999999999999999999999999999997
No 55
>KOG0109|consensus
Probab=98.81 E-value=3.9e-09 Score=67.69 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=33.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
-+|||||||..+++.+|+.+|++||.|.+|.|+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN 37 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN 37 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc
Confidence 36999999999999999999999999999999876
No 56
>KOG0110|consensus
Probab=98.78 E-value=3.8e-09 Score=73.70 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|+|.|+|+.++..+++.+|..||.+..|+|+.-...+.++|||||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~ 661 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVD 661 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeee
Confidence 36789999999999999999999999999999999876677789999996
No 57
>KOG0131|consensus
Probab=98.75 E-value=7.5e-09 Score=62.51 Aligned_cols=53 Identities=34% Similarity=0.464 Sum_probs=47.0
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeecCCCCCccceEEE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRI-IMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~d~~tg~~~G~~fV 80 (81)
+....+.++||+||.+.+++..|...|+.||.+.+. .+++|..||.++|||||
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i 144 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFI 144 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEE
Confidence 334567899999999999999999999999988764 78999999999999997
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.70 E-value=3.7e-08 Score=67.01 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=35.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcC------------CCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKC------------GDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~------------G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||||||+.+++++|+++|..+ +.|..+. .++.+||||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVe 229 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLE 229 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEE
Confidence 4467899999999999999999999975 2333333 34568999996
No 59
>KOG4209|consensus
Probab=98.63 E-value=4.4e-08 Score=61.46 Aligned_cols=54 Identities=28% Similarity=0.616 Sum_probs=49.6
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
........+||+|+.+.++.+++...|+.||.+..+.+..|+.+|+++||+|||
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yve 149 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVE 149 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEe
Confidence 344567889999999999999999999999999999999999999999999996
No 60
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.62 E-value=8.2e-08 Score=66.83 Aligned_cols=43 Identities=33% Similarity=0.457 Sum_probs=37.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKC--GDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+||++.+++++|+++|++| |.|.+|.++ ++|||||
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVe 275 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVH 275 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEE
Confidence 345789999999999999999999999 999999765 4599995
No 61
>KOG0146|consensus
Probab=98.60 E-value=8.7e-08 Score=61.21 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..-+++++|||=.||.+..+.+|...|-+||.|.+.++-.|+.|..+|.||||
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 34578999999999999999999999999999999999999999999999998
No 62
>KOG0146|consensus
Probab=98.59 E-value=3.6e-08 Score=62.91 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=45.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.+.++||||-|...-.|++++.+|..||.+.+|.+.+.. .|.+||++||
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFV 65 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFV 65 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEE
Confidence 356889999999999999999999999999999998885 7999999998
No 63
>KOG0116|consensus
Probab=98.56 E-value=1.1e-07 Score=63.90 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=41.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....|||+|||++++.++|++.|.+||+|+...|..-.-.++..+|||||
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~ 336 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVE 336 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEE
Confidence 44569999999999999999999999999988776643345555899985
No 64
>KOG0123|consensus
Probab=98.49 E-value=2.1e-07 Score=61.85 Aligned_cols=43 Identities=26% Similarity=0.548 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 36 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
|||.||++.++...|.+.|+.||+|.+|+++.+. .| ++|| ||+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~ 121 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQ 121 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEE
Confidence 9999999999999999999999999999999996 56 9999 985
No 65
>KOG0117|consensus
Probab=98.49 E-value=1.4e-07 Score=63.51 Aligned_cols=42 Identities=38% Similarity=0.593 Sum_probs=38.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+.|||.||+.++|++.|+++|++||.|++|..++| ||||
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFV 298 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFV 298 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEE
Confidence 45678999999999999999999999999999988765 8887
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=98.45 E-value=3.2e-07 Score=47.47 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeecCCC--CCccceEEEC
Q psy518 47 EEQLYELFS----KCGDIKRII-MGLDKYK--KTPCGFCFLE 81 (81)
Q Consensus 47 ~~~l~~~f~----~~G~v~~~~-~~~d~~t--g~~~G~~fVe 81 (81)
+++|++.|+ .||.|.++. ++.++.+ ++++|||||+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~ 43 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYIT 43 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEE
Confidence 578888888 999999995 7777767 9999999994
No 67
>KOG0123|consensus
Probab=98.35 E-value=7.4e-07 Score=59.31 Aligned_cols=51 Identities=31% Similarity=0.460 Sum_probs=47.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......|||.|++..++.+.|+..|+.+|+|..++++.+ ..|+++|||||+
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~ 317 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVE 317 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEE
Confidence 456778999999999999999999999999999999998 489999999995
No 68
>KOG0109|consensus
Probab=98.35 E-value=1.7e-07 Score=60.33 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=35.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.....+|+|||+.+.++.++|++.|++||+|.+|+|++|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc
Confidence 346778999999999999999999999999999999876
No 69
>KOG4212|consensus
Probab=98.35 E-value=8.8e-07 Score=59.86 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFS-KCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+.+||.|+|+++.+.+|++++. +.|+|+.|.+..| .+|+++|+|.||
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVE 92 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVE 92 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEE
Confidence 345699999999999999999998 4799999999999 589999999997
No 70
>KOG0132|consensus
Probab=98.28 E-value=1.1e-06 Score=62.49 Aligned_cols=43 Identities=35% Similarity=0.592 Sum_probs=38.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
-+++||||.|+..+++.+|..+|+.||+|.+|.++-. +|+|||
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI 462 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFI 462 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEE
Confidence 5678999999999999999999999999999987554 578887
No 71
>KOG0226|consensus
Probab=98.23 E-value=9.4e-07 Score=55.97 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+||.|.|..+++++.|...|.+|-.....++++|+.||+++||+||
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfV 237 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFV 237 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceee
Confidence 4567999999999999999999999988888999999999999999998
No 72
>KOG4849|consensus
Probab=98.20 E-value=5.1e-07 Score=59.55 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCccceEEE
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCG--DIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~d~~tg~~~G~~fV 80 (81)
-.+|||||-|++|+++|.+.+..-| .+.++++..++.+|++||||+|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~ 129 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALL 129 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEE
Confidence 3589999999999999999888777 6677888888999999999986
No 73
>KOG4454|consensus
Probab=98.19 E-value=6e-07 Score=55.91 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=43.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|+...++++-|.++|-+.|+|.++.|..++ .++.+ ||||+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~ 55 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVF 55 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeee
Confidence 345789999999999999999999999999999998886 56667 99985
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.13 E-value=1.4e-05 Score=44.13 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEeecCCCCCccceEEE
Q psy518 34 STLYVGNLSYYTTEEQLYELFSK--CGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
++|-+.|+|...+.++|.+++.. .|...-+.++.|..++-+.|||||
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFV 50 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFV 50 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEE
Confidence 57999999999999999888875 356677899999989999999998
No 75
>KOG0533|consensus
Probab=98.11 E-value=6.6e-06 Score=52.04 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=42.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+|+|.|||+.+++++|+++|..||.+..+.+.+++ .|.+.|.|-|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v 129 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADV 129 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCcccee
Confidence 44789999999999999999999999999999999986 7888887754
No 76
>KOG4661|consensus
Probab=98.10 E-value=4.9e-06 Score=58.03 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=46.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+++|||.+|+..+...+|+.+|++||.|.-..++.+..+.-.++||||.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVT 453 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVT 453 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEE
Confidence 3457789999999999999999999999999999999987777778999984
No 77
>KOG4206|consensus
Probab=98.08 E-value=1.2e-05 Score=50.02 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYE----LFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+|||.||+..+..++|+. +|++||.|.+|..- .|.+.+|=|||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~V 57 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFV 57 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEE
Confidence 344999999999999998877 99999999998653 47888999998
No 78
>KOG0153|consensus
Probab=98.08 E-value=4.6e-06 Score=54.76 Aligned_cols=45 Identities=27% Similarity=0.464 Sum_probs=38.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+||||+|...+++.+|++.|.+||+|+.+.+... +|.|||+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ 270 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVT 270 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceee
Confidence 45678999999999999999999999999999988654 3578874
No 79
>KOG0120|consensus
Probab=97.96 E-value=7.4e-06 Score=56.27 Aligned_cols=51 Identities=31% Similarity=0.539 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++||++||...++..+.++...||.+....++.|..+|.++||||.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~e 337 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCE 337 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeee
Confidence 345689999999999999999999999999999999999999999999975
No 80
>KOG4210|consensus
Probab=97.92 E-value=6.2e-06 Score=53.30 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=45.4
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLY-VGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++| |+++++.+++++|+..|..+|.|..++++.++.+|..+|||+|+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~ 233 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVD 233 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhh
Confidence 344555 99999999999999999999999999999999999999999974
No 81
>KOG1548|consensus
Probab=97.87 E-value=4.7e-05 Score=50.15 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=41.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeecCCCCCccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIK--------RIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~d~~tg~~~G~~fV 80 (81)
...+.|||.|||.++|.+++..+|+.||-|. +|.|.++. .|+.+|=|.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc 188 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALC 188 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEE
Confidence 3456799999999999999999999999776 47888885 5998886654
No 82
>KOG0151|consensus
Probab=97.79 E-value=3.3e-05 Score=54.94 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=39.1
Q ss_pred HHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 25 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
..+...+..+++||+||++.++++.|...|..||+|..++|+..+
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR 210 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR 210 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeeccc
Confidence 334556778899999999999999999999999999999887764
No 83
>KOG0110|consensus
Probab=97.77 E-value=3.2e-05 Score=54.66 Aligned_cols=48 Identities=40% Similarity=0.558 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCC---CccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKK---TPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg---~~~G~~fVe 81 (81)
++|||.||+++++.+.+...|...|.|..+.|...+..- .+.||||||
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVE 566 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVE 566 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEE
Confidence 349999999999999999999999999999887664321 245999996
No 84
>KOG4212|consensus
Probab=97.75 E-value=2.6e-05 Score=52.97 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=41.0
Q ss_pred hhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccc
Q psy518 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCG 76 (81)
Q Consensus 27 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G 76 (81)
....++.++|||.|||+++|+..|++-|..||.|..+.|+ +.|+++|
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG 576 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG 576 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc
Confidence 3455778899999999999999999999999999999884 4588887
No 85
>KOG0106|consensus
Probab=97.73 E-value=3.1e-05 Score=48.23 Aligned_cols=40 Identities=33% Similarity=0.613 Sum_probs=34.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+|||+||+.+.+.+++.+|..||.+.++.+. .||+|||
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~ 41 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVE 41 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceec
Confidence 469999999999999999999999999998762 3577774
No 86
>KOG0147|consensus
Probab=97.70 E-value=5.8e-06 Score=56.82 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+++|+--++..++.-+|.++|+.+|.|.+|+++.|+.+++++|.||||
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yve 227 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVE 227 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEE
Confidence 455678999999999999999999999999999999999999999999996
No 87
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.60 E-value=0.0001 Score=36.20 Aligned_cols=27 Identities=52% Similarity=0.888 Sum_probs=21.6
Q ss_pred HHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 50 LYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 50 l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
|..+|++||+|.++.+..+. +|+|||+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~ 27 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVE 27 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEE
Confidence 67899999999999886653 6899985
No 88
>KOG4660|consensus
Probab=97.54 E-value=8.3e-05 Score=51.40 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=40.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|+|-|||..+++++|..+|+.||+|+.|+ .|-..+|-+|||
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----~t~~~~~~~~v~ 118 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----ETPNKRGIVFVE 118 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----cccccCceEEEE
Confidence 44678999999999999999999999999999965 355567888875
No 89
>KOG4211|consensus
Probab=97.36 E-value=0.00058 Score=46.88 Aligned_cols=48 Identities=25% Similarity=0.565 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....-|-+.+|||++|+++|.++|+.++ |..+.+. +.+|+..|=||||
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve 55 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVE 55 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEE
Confidence 3455678899999999999999999985 6665444 4579999999996
No 90
>KOG4206|consensus
Probab=97.14 E-value=0.0011 Score=41.34 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=41.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+....+|+.|+|.+++.+.+..+|.+|.....++++..+ .|.||||
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve 189 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVE 189 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEe
Confidence 4667889999999999999999999999999999987764 5788886
No 91
>KOG0129|consensus
Probab=96.95 E-value=0.0017 Score=44.82 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 66 (81)
.-+++||||+||++++|+.|...|..||.+ .+.|+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP 291 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWP 291 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecC
Confidence 456789999999999999999999999974 45565
No 92
>KOG1457|consensus
Probab=96.92 E-value=0.0013 Score=41.45 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
-.+|||.||..+++|++|+.+|..|-....++|.. ..|. ..||+|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~--~vaf~~ 254 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGM--PVAFAD 254 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCc--ceEeec
Confidence 34799999999999999999999997555555422 1232 366764
No 93
>KOG1995|consensus
Probab=96.88 E-value=0.0013 Score=43.61 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=44.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeecCCCCCccceEEE
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIK--------RIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~d~~tg~~~G~~fV 80 (81)
.....+|||.+||..++++++.++|.++|.|. .|.|.+|++|+++||=|.|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatv 121 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATV 121 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceee
Confidence 45667899999999999999999999999775 4778899999999997765
No 94
>KOG0128|consensus
Probab=96.76 E-value=0.00094 Score=48.44 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|.|.|+..|.+.++.++..+|++.+.+++..+ .|+++|-+||+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~ 783 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVD 783 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceecc
Confidence 4579999999999999999999999999999998886 79999999985
No 95
>KOG0129|consensus
Probab=96.72 E-value=0.0044 Score=42.88 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=45.4
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCccceEEE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFS-KCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
......++||||+||.-++.++|-.+|. -||.|..+-|=.|++-+-++|-|-|
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 4456788999999999999999999999 5999999999888777777776554
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.58 E-value=0.0051 Score=34.31 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
..|.+.+++..++.++|+..|++||.|..|.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G 36 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG 36 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC
Confidence 46888899999999999999999999999887543
No 97
>KOG3152|consensus
Probab=96.47 E-value=0.0052 Score=39.32 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=35.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYK 71 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~t 71 (81)
...-||++++|+......|+.+|..||.|-+|.+.....+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 5567999999999999999999999999999998665433
No 98
>KOG1190|consensus
Probab=96.42 E-value=0.0034 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.++-|+++|||++++|+++..++.+||.|..+.+.+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG 63 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG 63 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc
Confidence 5678999999999999999999999999999877554
No 99
>KOG1457|consensus
Probab=96.29 E-value=0.011 Score=37.48 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC-ccceEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT-PCGFCFL 80 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~-~~G~~fV 80 (81)
...++|||.+||.++.--+|..+|..|-.-+.+.|-.-...++ .+-+|||
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFa 82 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFA 82 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEE
Confidence 4578999999999999999999999986555555422211222 2356775
No 100
>KOG0115|consensus
Probab=96.09 E-value=0.006 Score=39.05 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=37.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..|||.||+..+..+.+...|+.||+|....+..| ..+++.|=++|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v 77 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIV 77 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchh
Confidence 77999999999999999999999999988766666 34555554444
No 101
>KOG4211|consensus
Probab=95.46 E-value=0.038 Score=38.30 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=37.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKR-IIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~d~~tg~~~G~~fV 80 (81)
....|-+++||+.+++++|.++|+..=.+.. +.++.|+ .+++.|=|||
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfV 150 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFV 150 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEE
Confidence 3456888999999999999999997644444 5677774 6788998988
No 102
>KOG0105|consensus
Probab=94.84 E-value=0.088 Score=32.62 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
....|.|.+||+..++++|++.....|.|....+.+|
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD 150 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD 150 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc
Confidence 4567999999999999999999999999999888776
No 103
>KOG0128|consensus
Probab=94.79 E-value=0.0015 Score=47.48 Aligned_cols=49 Identities=33% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++||.||+..+.+++|...|..+|.+..+++......++.+|+||++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 3468999999999999999999999998888777566789999999985
No 104
>KOG1855|consensus
Probab=94.36 E-value=0.07 Score=36.60 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
-.+++|.+-|||.+-.-+-|.++|..+|.|..|+|...
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 47889999999999988999999999999999998655
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.71 E-value=0.11 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 66 (81)
+.|-|.+.+++.. +.+...|..||+|.++.+.
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC
Confidence 4577888887755 5566688999999998875
No 106
>KOG2314|consensus
Probab=93.70 E-value=0.065 Score=38.01 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=37.5
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTT------EEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~------~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...|+|.|+|-.-. ..-|..+|+++|.+....++.+.++| .+||.|+|
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E 111 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVE 111 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEE
Confidence 45689999985432 23466789999999999999887655 89999986
No 107
>KOG1365|consensus
Probab=93.59 E-value=0.084 Score=35.95 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=40.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeE--EEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCG-DIKR--IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~--~~~~~d~~tg~~~G~~fVe 81 (81)
+....|-+++||+.++.++|..+|..|. .|.. |+++.+ ..|++.|=|||+
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIq 330 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQ 330 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhh
Confidence 3456799999999999999999999886 3333 677776 579999999985
No 108
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.22 E-value=0.63 Score=25.15 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
..-.|+. .|......+|..+|++||.| .|.++.|
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d 42 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND 42 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC
Confidence 3445555 99999999999999999976 4455554
No 109
>KOG1365|consensus
Probab=91.28 E-value=0.66 Score=31.79 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=34.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEEeecCCCCCccceEEE
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKC----GDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~----G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.|-.++||+++++.++.++|.+- |..+.+.++..+ .|+..|=|||
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFv 211 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFV 211 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEE
Confidence 45667999999999999999743 344567677654 6888888886
No 110
>KOG1190|consensus
Probab=91.23 E-value=0.53 Score=32.41 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRI 63 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~ 63 (81)
++..+++..|+|..++|++++..|..-|...+.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 567789999999999999999999998866544
No 111
>KOG2193|consensus
Probab=90.57 E-value=0.28 Score=33.98 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKC 57 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~ 57 (81)
.++|+|||.+.++..+|+.+|...
T Consensus 2 nklyignL~p~~~psdl~svfg~a 25 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA 25 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc
Confidence 468999999999999999998754
No 112
>KOG4676|consensus
Probab=90.47 E-value=0.2 Score=34.26 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~ 67 (81)
...|-|.||++.++.++++.+|...|.|..+.|+-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp 41 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYP 41 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccC
Confidence 34799999999999999999999999999888755
No 113
>KOG4307|consensus
Probab=90.04 E-value=0.22 Score=36.35 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=40.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKR-IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~d~~tg~~~G~~fVe 81 (81)
.+..|||-.||..+++.++-..|...-.|++ |.|.+-+ +++.++-|||+
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~ 482 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVA 482 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhhe
Confidence 5678999999999999999999998777877 7776664 77888888874
No 114
>KOG0112|consensus
Probab=90.02 E-value=0.13 Score=38.25 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=34.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
...+.+||+|||+..+++.+|+..|..+|.+.+|.|-..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP 407 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP 407 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC
Confidence 346778999999999999999999999999999987443
No 115
>KOG0106|consensus
Probab=89.60 E-value=0.23 Score=31.22 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 64 (81)
.....+.|.|++..+.+.+|...|.++|.+....
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 4556789999999999999999999999885443
No 116
>KOG1456|consensus
Probab=89.18 E-value=1.3 Score=30.34 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred hhcCCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecC
Q psy518 28 KLLRTTSTLYVGNLSYYT-TEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
....++.-+.|-+|.... +.+.|..+|-.||.|++|.+++-+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk 324 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK 324 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc
Confidence 334567778899998755 567899999999999999998875
No 117
>KOG1456|consensus
Probab=87.97 E-value=1.3 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.+.+.-+.|++|-..+++.+|-+.++.||+|..+..+-.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~ 66 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH 66 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc
Confidence 455667999999999999999999999999998866544
No 118
>KOG0112|consensus
Probab=86.87 E-value=1.3 Score=33.33 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 65 (81)
....+.+++++|..++....|...|..||.|..|.+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 345678999999999999999999999999998765
No 119
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=85.08 E-value=1.9 Score=23.32 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~f 79 (81)
..-+|||+++..+.+.-+..+.+..+...-+.+..+. ...||+|
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~ 68 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDF 68 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEE
Confidence 4459999999999888777777766655555444442 2578887
No 120
>KOG2253|consensus
Probab=82.51 E-value=0.53 Score=33.98 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=32.2
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 65 (81)
...++.-++||+|+...+..+-++.++..+|.|..+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr 72 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR 72 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh
Confidence 44567789999999999999999999999998877643
No 121
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.50 E-value=1.7 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCe
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSK-CGDI 60 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v 60 (81)
....+|.|++||+..|++++.+.+.. ++.-
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 44568999999999999999987776 5544
No 122
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=80.37 E-value=3.2 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..-+|||+++..+.+.-+..+-+.++...-+.+..+ + .-.||+|-
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~-~eqG~~~~ 71 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--N-TESGFEFQ 71 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--C-CCCCcEEE
Confidence 455999999988887777776666665444444433 2 33388873
No 123
>KOG4307|consensus
Probab=79.57 E-value=6.8 Score=29.14 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeecCCCCCccceEEE
Q psy518 31 RTTS-TLYVGNLSYYTTEEQLYELFSKCGDIK-RIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 31 ~~~~-~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~~d~~tg~~~G~~fV 80 (81)
+.+. -|-+.|+|++++-++|.++|..|-.+- +|.+-+. +.|...|-|.|
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mv 914 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMV 914 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeE
Confidence 3444 688999999999999999999996553 4444443 56777776554
No 124
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=79.00 E-value=2.1 Score=29.03 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCCHHH----H--HHHhhcCCCeeEEEEee
Q psy518 34 STLYVGNLSYYTTEEQ----L--YELFSKCGDIKRIIMGL 67 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~----l--~~~f~~~G~v~~~~~~~ 67 (81)
.-+||-+|++.+..++ | .++|.+||.|.+|.+-+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 3479999998877665 3 47899999999986643
No 125
>KOG4454|consensus
Probab=76.65 E-value=0.59 Score=29.75 Aligned_cols=48 Identities=38% Similarity=0.514 Sum_probs=39.6
Q ss_pred CCCeEEEcC----CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGN----LSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~n----l~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...+++.|+ |...++++.+...|++.|++..+++..+.. |+++-++|+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~ 130 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFV 130 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccch
Confidence 345677888 778889999999999999999999988864 777777775
No 126
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.93 E-value=2.4 Score=27.98 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
..+.|...|+..+++-..+...|-+||+|+.|.++.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 45668889999999888999999999999999998875
No 127
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=74.12 E-value=4.8 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII 64 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 64 (81)
....|.|-+.|+. ....+...|++||+|.+..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEee
Confidence 3456888888888 5678888999999987764
No 128
>KOG4676|consensus
Probab=72.57 E-value=0.5 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=30.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~ 67 (81)
++++|++|+..+...++.++|..+|+|...++..
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as 185 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS 185 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc
Confidence 6799999999999999999999999998887743
No 129
>KOG4210|consensus
Probab=72.54 E-value=1.3 Score=28.92 Aligned_cols=49 Identities=20% Similarity=0.085 Sum_probs=39.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
...++|++++.+.+.+.+...++..+|...............++|++.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~ 135 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSV 135 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceee
Confidence 4678999999999998888888888998777777666667778888765
No 130
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=72.14 E-value=4.9 Score=26.04 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.....|+|||+.++..-+..++...-.+....+|..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 446789999999999999999887666555555554
No 131
>KOG2416|consensus
Probab=68.55 E-value=2.2 Score=30.88 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSK-CGDIKRI 63 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~ 63 (81)
..++.|||.||-.-.|.-+|+.++.+ +|.|...
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~ 475 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF 475 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH
Confidence 45678999999999999999999995 6666655
No 132
>KOG4410|consensus
Probab=68.36 E-value=13 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=25.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDI-KRIIM 65 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~ 65 (81)
..-|+++||+.++.-.+|+..+..-|.+ .++.|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw 363 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW 363 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee
Confidence 3459999999999999999998887643 44444
No 133
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=66.64 E-value=12 Score=22.50 Aligned_cols=40 Identities=45% Similarity=0.656 Sum_probs=33.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
......+++++++..++...+...|..+|.+....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3466789999999999999999999999998766665443
No 134
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=66.28 E-value=16 Score=18.50 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEeecC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKC---GDIKRIIMGLDK 69 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~d~ 69 (81)
..+|+|.++.. .+.++++.+|..| ....+|.|+-|.
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt 43 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT 43 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC
Confidence 35699999865 5678899999888 235677777763
No 135
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=65.15 E-value=12 Score=20.24 Aligned_cols=45 Identities=24% Similarity=0.185 Sum_probs=26.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCccceEEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSK-CGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..-+|||+++..+.+.-...+-+. .+...-+.+..+ ..-.||.|-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~ 70 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFF 70 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEE
Confidence 455999999988877666555554 344333333332 234577773
No 136
>KOG4008|consensus
Probab=63.66 E-value=8 Score=24.93 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.9
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR 62 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 62 (81)
.......++|+-|+|..++++.|.....+.|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34456778999999999999999999999884443
No 137
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=58.37 E-value=13 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=24.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.+.|+|+|+.++..-|..++.....+..+.++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~Q 140 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQ 140 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeH
Confidence 5789999999999988888864323455555444
No 138
>KOG2891|consensus
Probab=57.77 E-value=10 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEEee
Q psy518 32 TTSTLYVGNLSYY------------TTEEQLYELFSKCGDIKRIIMGL 67 (81)
Q Consensus 32 ~~~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~~~~~~ 67 (81)
...+||+.++|-. -+++-|+..|+.||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457899888732 35678999999999999988754
No 139
>PHA02531 20 portal vertex protein; Provisional
Probab=57.55 E-value=6.7 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=30.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcc
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPC 75 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~ 75 (81)
...|=|||||..-.++.|+.+..+| +-+++.|..||.-+
T Consensus 281 vFYiDVGNlPk~KAeqYlr~vm~~y----kNklvYDa~TGeir 319 (514)
T PHA02531 281 VFYIDVGNLPKRKAEEYLNNVMQRY----KNRVVYDANTGKVK 319 (514)
T ss_pred EEEEEcCCCChhhHHHHHHHHHHHh----hhhEEEeCCCCeec
Confidence 3456789999999999999998888 55677777777644
No 140
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.97 E-value=8.3 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFS 55 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~ 55 (81)
...++|-|.|||....+++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4678899999999999999997643
No 141
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.35 E-value=29 Score=17.63 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCeeEEEE
Q psy518 48 EQLYELFSKCGDIKRIIM 65 (81)
Q Consensus 48 ~~l~~~f~~~G~v~~~~~ 65 (81)
++|++.|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999998876544
No 142
>KOG4660|consensus
Probab=53.68 E-value=13 Score=26.70 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCccceEEE
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSK-CGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.+++-|.|++...|...|.+.-.+ .|.=..+.++.|-.+....|||||
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFI 436 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFI 436 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEE
Confidence 345666666666666665554332 455567888888777778899998
No 143
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=53.66 E-value=14 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=25.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.+.|+|+|+.++...+..++.....+....+|..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 4788999999999999888865444555555444
No 144
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=52.14 E-value=16 Score=23.33 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh--cCCCeeEEEE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFS--KCGDIKRIIM 65 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~--~~G~v~~~~~ 65 (81)
....++|||||+..+..-|..++. .+|...-+.+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 456789999999999999988886 4665444443
No 145
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=51.85 E-value=13 Score=26.38 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=30.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcc
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPC 75 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~ 75 (81)
.|=|||||..-.++.|+++-.+| +-+++.|..||.-+
T Consensus 280 yIDvGnlpk~KAeqyl~~iM~k~----knklvYDa~TGevr 316 (501)
T PF07230_consen 280 YIDVGNLPKQKAEQYLRDIMNKY----KNKLVYDASTGEVR 316 (501)
T ss_pred EEECCCCChHhHHHHHHHHHHHh----cceeeecCCCCeec
Confidence 35589999999999999998888 56778887777644
No 146
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=50.93 E-value=35 Score=17.68 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHhhcCC-CeeEEEEeecCCCCCccceEEE
Q psy518 48 EQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 48 ~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fV 80 (81)
+++.+-|...| ++..++-+..+.++.+--.-+|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~v 35 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEV 35 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEE
Confidence 35666677777 6677777776655544333333
No 147
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=49.58 E-value=28 Score=17.77 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 45 TTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 45 ~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
.-+..|.+.|-+--.|.++-|...+.-++ |-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 34567888888888899998877654444 44554
No 148
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.03 E-value=16 Score=16.46 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhcCC
Q psy518 43 YYTTEEQLYELFSKCG 58 (81)
Q Consensus 43 ~~~~~~~l~~~f~~~G 58 (81)
.+++++.|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678899999998754
No 149
>PF15063 TC1: Thyroid cancer protein 1
Probab=47.40 E-value=13 Score=19.66 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDI 60 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v 60 (81)
++--+.|+-.+++...|+.+|..-|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 444567888899999999999999854
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=46.97 E-value=25 Score=19.13 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=17.7
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhcCC-CeeE
Q psy518 34 STLYVGNLSYYTTEEQ----LYELFSKCG-DIKR 62 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~----l~~~f~~~G-~v~~ 62 (81)
..|+|.|||....... |+.++..+| .|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~ 36 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS 36 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE
Confidence 3589999999888655 556666776 4444
No 151
>PF14128 DUF4295: Domain of unknown function (DUF4295)
Probab=46.75 E-value=26 Score=16.78 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=12.6
Q ss_pred eEEEEeecCCCCCccceEEEC
Q psy518 61 KRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 61 ~~~~~~~d~~tg~~~G~~fVe 81 (81)
.-|++++.+.||. |.|.|
T Consensus 18 KvIkmVKSpKTGa---YtFkE 35 (47)
T PF14128_consen 18 KVIKMVKSPKTGA---YTFKE 35 (47)
T ss_pred EEEEEEeCCCCcc---eEEEE
Confidence 4567788777765 88865
No 152
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=45.92 E-value=56 Score=21.61 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=36.8
Q ss_pred hHHHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCccce
Q psy518 23 RAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSK-CGDIKRIIMGLDKYKKTPCGF 77 (81)
Q Consensus 23 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~d~~tg~~~G~ 77 (81)
..........+.-||.-+|++...+++- .++.. .-....-.|..++.+|.-+|.
T Consensus 11 ~~~~~~~LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G~ 65 (281)
T PF11004_consen 11 QRDAIEALEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRGA 65 (281)
T ss_pred HHHHHHHhhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceecc
Confidence 3455566778999999999999988776 34432 333344456667777777774
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.95 E-value=30 Score=19.57 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=22.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYY---------TTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++.|-|++.. .+.+.|++.|..|.+++ ++...++ .-+.|++.|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~ 62 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVE 62 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEE
Confidence 4556666432 24578999999998764 5555554 2557888774
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=43.93 E-value=43 Score=21.11 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGD 59 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~ 59 (81)
-+.|+|+|+.++.+.+..++...|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999975553
No 155
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=43.08 E-value=33 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=37.9
Q ss_pred CCCCeEEEcCCCCCCCH-HHHHHHhhcCCCeeEEEEeecCCCCCccceEE
Q psy518 31 RTTSTLYVGNLSYYTTE-EQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~-~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~f 79 (81)
.....+|.|-.|-+..+ ++|++.+++. .+.+.-+...++|...-||||
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGf 343 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGF 343 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCce
Confidence 34557999999998876 7889888876 456777777888888888888
No 156
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=41.27 E-value=41 Score=18.26 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=25.2
Q ss_pred eEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEE--eecCCCCCccceEE
Q psy518 35 TLYVGNLSYYTTEEQLY---ELFSKCGDIKRIIM--GLDKYKKTPCGFCF 79 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~--~~d~~tg~~~G~~f 79 (81)
..|+.+||..+.+.++. ..+..+++-..|.. ......+.+.|++.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi 61 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGI 61 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEE
Confidence 45889999998876654 45555553333332 11234556667654
No 157
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.16 E-value=54 Score=16.70 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHhhcCC-CeeEEEEeecCCCCCccceEEE
Q psy518 48 EQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 48 ~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fV 80 (81)
+++.+-|...| +|..+.-+..+.++.+--.-||
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~v 35 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFV 35 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEE
Confidence 45556666666 6666666666544444444444
No 158
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=39.47 E-value=26 Score=17.93 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.4
Q ss_pred hhcCCCCeEEEcCCCCCCCHH
Q psy518 28 KLLRTTSTLYVGNLSYYTTEE 48 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~ 48 (81)
.....++++|+|.+|...-.+
T Consensus 22 ~Ls~tSr~vflG~IP~~W~~~ 42 (67)
T PF15407_consen 22 ELSLTSRRVFLGPIPEIWLQD 42 (67)
T ss_pred HHHHcCceEEECCCChHHHHc
Confidence 334567899999999766544
No 159
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.38 E-value=63 Score=18.90 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKC 57 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~ 57 (81)
-+.++|+|+..+.+.+..++...
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcC
Confidence 47789999999988888888754
No 160
>PHA01632 hypothetical protein
Probab=35.98 E-value=49 Score=16.48 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q psy518 36 LYVGNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 36 l~v~nl~~~~~~~~l~~~f~~ 56 (81)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 455689999999999987653
No 161
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=35.48 E-value=52 Score=15.20 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGD 59 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~ 59 (81)
..+++.+.......+.|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35677776657788999999998874
No 162
>COG5584 Predicted small secreted protein [Function unknown]
Probab=33.39 E-value=60 Score=18.05 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 40 NLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 40 nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
|++.+..-.-+++.|.++|+|.---+...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 344444556678899999998865554443
No 163
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=32.98 E-value=67 Score=22.73 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=25.2
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEE
Q psy518 38 VGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 38 v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
+.-.||.+|.+-|.+.=.+ ....+.=.-|+ ||...||.||
T Consensus 358 ~~laPWn~T~nFi~A~qgk--a~L~l~G~gDP-TG~GeGfSfi 397 (457)
T PF12157_consen 358 LQLAPWNTTKNFINATQGK--AMLQLHGEGDP-TGRGEGFSFI 397 (457)
T ss_pred HhCCChHhHHHHHHHhccC--cEEEEecCCCC-CCCCCceEEE
Confidence 3446777888877776222 13333334565 7888899887
No 164
>PF14893 PNMA: PNMA
Probab=31.79 E-value=43 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 56 (81)
..-+.|.|.++|.+++++++++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34567999999999999988876653
No 165
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=31.37 E-value=68 Score=18.19 Aligned_cols=19 Identities=32% Similarity=0.763 Sum_probs=15.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q psy518 35 TLYVGNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~ 56 (81)
.||+||.+ +++++..++..
T Consensus 3 siWiG~f~---s~~el~~Y~e~ 21 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFEI 21 (122)
T ss_pred EEEEecCC---CHHHHHHHhCc
Confidence 58999875 78899988853
No 166
>KOG3424|consensus
Probab=31.19 E-value=1.1e+02 Score=17.72 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhhc-CCCeeEEEEee----cCCCCCccceEEE
Q psy518 44 YTTEEQLYELFSK-CGDIKRIIMGL----DKYKKTPCGFCFL 80 (81)
Q Consensus 44 ~~~~~~l~~~f~~-~G~v~~~~~~~----d~~tg~~~G~~fV 80 (81)
.++.++|++-+.. |-.-.++.++. .-.+|++.|||.|
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI 75 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI 75 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee
Confidence 4566777665553 43223333333 2346888899976
No 167
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=30.81 E-value=95 Score=16.76 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEee
Q psy518 34 STLYVGNLSYYTTEEQLYELFSK-CG-DIKRIIMGL 67 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~ 67 (81)
...|+-.++..++..+++..++. || .|.+|+.+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 35777788899999999999987 66 666665544
No 168
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=30.56 E-value=76 Score=17.01 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=25.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEeec
Q psy518 35 TLYVGNLSYYTTEEQLYELFSK-CG-DIKRIIMGLD 68 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~d 68 (81)
..|+-.++..++..++++.++. || .|.+|+.+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 4677778889999999998886 66 5666655443
No 169
>KOG1574|consensus
Probab=29.84 E-value=88 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCHHH-HHHHhhcCCCe
Q psy518 36 LYVGNLSYYTTEEQ-LYELFSKCGDI 60 (81)
Q Consensus 36 l~v~nl~~~~~~~~-l~~~f~~~G~v 60 (81)
=+|.++...+|..+ +.++...+|..
T Consensus 17 r~VcGvt~~TTCqdVV~ALa~aigq~ 42 (375)
T KOG1574|consen 17 RIVCGVTERTTCQDVVIALAQAIGQK 42 (375)
T ss_pred eeeecccCCccHHHHHHHHHHHhCCC
Confidence 35677888888766 46777767643
No 170
>KOG2068|consensus
Probab=29.38 E-value=41 Score=22.72 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=26.8
Q ss_pred CeEEEcCCCCCCCHHHH---HHHhhcCCCeeEEEEeecC
Q psy518 34 STLYVGNLSYYTTEEQL---YELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l---~~~f~~~G~v~~~~~~~d~ 69 (81)
.-+||-+|+.....+.+ .+.|.+||.|.+|..-.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~ 116 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDP 116 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCc
Confidence 34788888877765544 3578899999999887765
No 171
>KOG0120|consensus
Probab=27.13 E-value=99 Score=22.23 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHhhcCCCeeEEEEeecCCCC---CccceEEEC
Q psy518 50 LYELFSKCGDIKRIIMGLDKYKK---TPCGFCFLE 81 (81)
Q Consensus 50 l~~~f~~~G~v~~~~~~~d~~tg---~~~G~~fVe 81 (81)
++.-+.+||.|..|.++++-..+ -..|--|||
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVe 460 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVE 460 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEE
Confidence 44455689999999998872222 234555664
No 172
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=26.84 E-value=90 Score=20.94 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=28.4
Q ss_pred eEEEcCCCCCCCHHHH---HHHhhc-CCCeeEEEEeecCCCCCccceEEE
Q psy518 35 TLYVGNLSYYTTEEQL---YELFSK-CGDIKRIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l---~~~f~~-~G~v~~~~~~~d~~tg~~~G~~fV 80 (81)
..++.++|..+.+.++ +..+.+ ++ .++.+..+...+.+.|++.+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~ 235 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIV 235 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEE
Confidence 5678899988877655 445555 43 34555555445788888763
No 173
>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process; PDB: 2BTW_A 2BU3_B.
Probab=25.96 E-value=33 Score=21.60 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.4
Q ss_pred ecCCCCCccceEEEC
Q psy518 67 LDKYKKTPCGFCFLE 81 (81)
Q Consensus 67 ~d~~tg~~~G~~fVe 81 (81)
.|+.++++|||-.|+
T Consensus 198 ~D~~s~~~RG~~~is 212 (212)
T PF05023_consen 198 IDPDSGKSRGYLLIS 212 (212)
T ss_dssp EETTTTEE-EEEEEE
T ss_pred cCCCCCCcceEEEeC
Confidence 456788999987764
No 174
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=25.60 E-value=77 Score=19.29 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhhcCCCeeE
Q psy518 44 YTTEEQLYELFSKCGDIKR 62 (81)
Q Consensus 44 ~~~~~~l~~~f~~~G~v~~ 62 (81)
..+.+.+..++.+||+|--
T Consensus 95 ~~t~e~~~~LL~~yGPLwv 113 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWV 113 (166)
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 6788999999999998753
No 175
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=24.46 E-value=86 Score=14.29 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=13.7
Q ss_pred cCCCCCCCHHHHHHHhhc
Q psy518 39 GNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 39 ~nl~~~~~~~~l~~~f~~ 56 (81)
=+++..++.++|+..|..
T Consensus 6 Lgl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 6 LGVPPDASDEEIKKAYRK 23 (55)
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 367788888998887764
No 176
>KOG2318|consensus
Probab=24.26 E-value=1.6e+02 Score=21.76 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhcC----CCeeEEEEeec
Q psy518 31 RTTSTLYVGNLSYYT-TEEQLYELFSKC----GDIKRIIMGLD 68 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~-~~~~l~~~f~~~----G~v~~~~~~~d 68 (81)
..+++|-|-|+.|.. ...+|.-+|..| |.|.+|.|...
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 456789999999975 567888888865 58888887554
No 177
>KOG2135|consensus
Probab=23.05 E-value=43 Score=23.89 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=23.7
Q ss_pred EEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeec
Q psy518 36 LYVGNLSYYT-TEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 36 l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
+-+.-.++.. +.++|...|.+||.|..|.+-..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~ 408 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS 408 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc
Confidence 3444455555 45899999999999998876443
No 178
>PRK06937 type III secretion system protein; Reviewed
Probab=22.49 E-value=72 Score=19.59 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=26.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|+|..-....-.+.+...+..++.+..+.++.|+ .-..|-|.||
T Consensus 134 ~I~V~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~--~L~~Ggc~iE 178 (204)
T PRK06937 134 VVRVNPDQAAAVREQIAKVLKDFPEVGYLEVVADA--RLDQGGCILE 178 (204)
T ss_pred EEEECHHHHHHHHHHHHHHHHhCCCCccEEEEeCC--CCCCCCeEEe
Confidence 45554433333344455567777777788888885 3446666664
No 179
>KOG2855|consensus
Probab=21.14 E-value=2.1e+02 Score=19.48 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCG 58 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G 58 (81)
.++..|||++-.+.--++|...+.++|
T Consensus 60 G~~~afiGkvGdD~fG~~l~~~L~~~~ 86 (330)
T KOG2855|consen 60 GGRVAFIGKVGDDEFGDDLLDILKQNG 86 (330)
T ss_pred CcceeeeecccchhhHHHHHHHHhhCC
Confidence 467899999988888888988888876
No 180
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=20.94 E-value=99 Score=18.24 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.6
Q ss_pred HHHHHHHhhcCCCeeEEEE
Q psy518 47 EEQLYELFSKCGDIKRIIM 65 (81)
Q Consensus 47 ~~~l~~~f~~~G~v~~~~~ 65 (81)
.+++..+...||+..-|.+
T Consensus 100 ~~Q~~~Y~nrfGpG~VIyw 118 (139)
T PF14811_consen 100 KKQFSSYWNRFGPGAVIYW 118 (139)
T ss_pred HHHHHHHHHHhCCceEEEe
Confidence 4567777778998776655
No 181
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=20.73 E-value=1.1e+02 Score=14.64 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=14.0
Q ss_pred cCCCCCCCHHHHHHHhhc
Q psy518 39 GNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 39 ~nl~~~~~~~~l~~~f~~ 56 (81)
-+|+.+++.++|+..|..
T Consensus 6 Lgl~~~~~~~eik~~y~~ 23 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRR 23 (64)
T ss_dssp CTSTTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHh
Confidence 367888899998887764
No 182
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.50 E-value=1e+02 Score=13.51 Aligned_cols=15 Identities=13% Similarity=0.156 Sum_probs=12.4
Q ss_pred CCHHHHHHHhhcCCC
Q psy518 45 TTEEQLYELFSKCGD 59 (81)
Q Consensus 45 ~~~~~l~~~f~~~G~ 59 (81)
.++++|+..+..+|-
T Consensus 4 Ws~~~L~~wL~~~gi 18 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGI 18 (38)
T ss_pred CCHHHHHHHHHHcCC
Confidence 467899999999884
No 183
>smart00457 MACPF membrane-attack complex / perforin.
Probab=20.03 E-value=63 Score=19.55 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=16.9
Q ss_pred cCCCCCCCHHHHHHHhhcCC
Q psy518 39 GNLSYYTTEEQLYELFSKCG 58 (81)
Q Consensus 39 ~nl~~~~~~~~l~~~f~~~G 58 (81)
.+||.......+..+|+.||
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yG 50 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYG 50 (194)
T ss_pred HhCccccCHHHHHHHHHHhC
Confidence 46777778889999999999
Done!