Query psy518
Match_columns 81
No_of_seqs 165 out of 1499
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 1E-18 3.5E-23 95.7 7.0 53 29-81 15-67 (99)
2 3s8s_A Histone-lysine N-methyl 99.7 7.1E-18 2.4E-22 93.9 7.1 51 31-81 4-54 (110)
3 2lkz_A RNA-binding protein 5; 99.7 2.4E-18 8.3E-23 93.7 4.1 51 31-81 7-59 (95)
4 2lxi_A RNA-binding protein 10; 99.7 1.2E-18 4.3E-23 93.9 2.9 49 33-81 1-50 (91)
5 1h2v_Z 20 kDa nuclear CAP bind 99.7 1E-17 3.5E-22 97.6 6.8 74 8-81 14-87 (156)
6 3s7r_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 88.3 7.1 53 29-81 7-59 (87)
7 1s79_A Lupus LA protein; RRM, 99.7 2.5E-17 8.5E-22 90.8 5.7 50 31-81 9-58 (103)
8 2rs2_A Musashi-1, RNA-binding 99.7 3.3E-17 1.1E-21 90.9 5.9 54 28-81 20-73 (109)
9 3p5t_L Cleavage and polyadenyl 99.7 2.8E-17 9.5E-22 88.2 5.2 48 34-81 2-51 (90)
10 1x4e_A RNA binding motif, sing 99.7 4.8E-17 1.6E-21 86.2 6.0 51 31-81 3-53 (85)
11 2m2b_A RNA-binding protein 10; 99.7 7.4E-18 2.5E-22 96.0 2.8 51 31-81 21-73 (131)
12 2j8a_A Histone-lysine N-methyl 99.7 5.4E-17 1.8E-21 92.7 5.7 48 34-81 3-54 (136)
13 2dgs_A DAZ-associated protein 99.7 1.3E-16 4.3E-21 86.7 6.8 51 31-81 8-58 (99)
14 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-16 3.5E-21 87.6 6.4 52 30-81 12-63 (103)
15 3n9u_C Cleavage and polyadenyl 99.7 8.5E-17 2.9E-21 94.3 6.5 50 32-81 54-105 (156)
16 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.7E-21 85.0 6.3 51 31-81 4-54 (87)
17 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.3E-21 85.3 7.0 51 31-81 3-53 (95)
18 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.8E-17 2.3E-21 84.0 5.0 48 34-81 1-48 (77)
19 2div_A TRNA selenocysteine ass 99.7 1.3E-16 4.3E-21 86.6 6.3 52 30-81 6-58 (99)
20 3ns6_A Eukaryotic translation 99.7 1.9E-17 6.4E-22 90.6 2.9 50 32-81 5-60 (100)
21 2la6_A RNA-binding protein FUS 99.7 1.7E-16 5.9E-21 86.2 6.8 52 30-81 10-69 (99)
22 3md1_A Nuclear and cytoplasmic 99.7 1.7E-16 5.7E-21 83.5 6.5 49 33-81 1-49 (83)
23 2x1f_A MRNA 3'-END-processing 99.7 1.5E-16 5.3E-21 86.0 6.4 49 33-81 2-50 (96)
24 1x4h_A RNA-binding protein 28; 99.7 1E-16 3.5E-21 88.5 5.8 52 30-81 12-63 (111)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.8E-21 84.6 5.7 52 30-81 4-55 (85)
26 2dh8_A DAZ-associated protein 99.7 1.3E-16 4.5E-21 87.4 6.0 52 30-81 13-64 (105)
27 2dgp_A Bruno-like 4, RNA bindi 99.7 2.6E-17 9E-22 90.3 3.1 52 30-81 10-61 (106)
28 4f02_A Polyadenylate-binding p 99.7 1.6E-16 5.4E-21 96.5 6.7 51 31-81 13-63 (213)
29 2dnm_A SRP46 splicing factor; 99.7 7.2E-17 2.5E-21 88.2 4.6 52 30-81 10-61 (103)
30 2khc_A Testis-specific RNP-typ 99.7 1.6E-16 5.5E-21 88.7 5.9 52 30-81 37-88 (118)
31 2cqd_A RNA-binding region cont 99.7 2.1E-16 7.1E-21 88.1 6.3 52 30-81 14-65 (116)
32 1p27_B RNA-binding protein 8A; 99.7 1.9E-16 6.4E-21 86.9 6.0 51 31-81 21-71 (106)
33 2jrs_A RNA-binding protein 39; 99.7 6.2E-16 2.1E-20 85.6 8.2 52 30-81 23-74 (108)
34 1whw_A Hypothetical protein ri 99.7 2.1E-16 7.2E-21 85.7 6.1 51 31-81 6-56 (99)
35 3ucg_A Polyadenylate-binding p 99.7 3.1E-16 1.1E-20 83.4 6.6 50 32-81 5-54 (89)
36 1x5u_A Splicing factor 3B subu 99.7 2.3E-16 7.7E-21 86.4 6.1 52 30-81 12-63 (105)
37 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 4E-21 82.9 4.6 47 35-81 1-47 (75)
38 2cq0_A Eukaryotic translation 99.7 2E-16 7E-21 86.4 5.6 52 30-81 12-63 (103)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-16 7.4E-21 86.1 5.6 52 30-81 9-60 (102)
40 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.8E-21 85.6 5.1 51 31-81 3-54 (96)
41 2cpz_A CUG triplet repeat RNA- 99.7 2.7E-16 9.1E-21 87.5 6.0 51 31-81 23-73 (115)
42 2e5h_A Zinc finger CCHC-type a 99.7 3E-16 1E-20 84.4 6.0 52 30-81 13-64 (94)
43 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-16 1.1E-20 87.1 6.2 52 30-81 12-63 (115)
44 2cqc_A Arginine/serine-rich sp 99.6 2.7E-16 9.4E-21 84.6 5.6 52 30-81 12-63 (95)
45 2xs2_A Deleted in azoospermia- 99.6 1.6E-16 5.6E-21 86.7 4.7 50 31-81 7-56 (102)
46 2dhg_A TRNA selenocysteine ass 99.6 4.6E-16 1.6E-20 85.1 6.5 50 31-81 7-57 (104)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 4.7E-16 1.6E-20 85.2 6.5 50 31-81 13-62 (105)
48 1iqt_A AUF1, heterogeneous nuc 99.6 9.1E-17 3.1E-21 83.2 3.4 47 35-81 1-47 (75)
49 1x5s_A Cold-inducible RNA-bind 99.6 2.7E-16 9.2E-21 85.7 5.5 52 30-81 9-60 (102)
50 1x4b_A Heterogeneous nuclear r 99.6 3.7E-16 1.3E-20 87.1 6.1 50 32-81 26-75 (116)
51 2cq4_A RNA binding motif prote 99.6 3.8E-16 1.3E-20 86.7 6.1 50 32-81 24-73 (114)
52 1wg5_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 85.6 6.1 50 31-81 13-63 (104)
53 1oo0_B CG8781-PA, drosophila Y 99.6 2.8E-16 9.7E-21 86.7 5.5 52 30-81 23-74 (110)
54 2do4_A Squamous cell carcinoma 99.6 5.9E-16 2E-20 84.2 6.6 51 30-81 14-64 (100)
55 2dng_A Eukaryotic translation 99.6 6.4E-16 2.2E-20 84.5 6.5 50 31-81 13-62 (103)
56 2cph_A RNA binding motif prote 99.6 4.1E-16 1.4E-20 85.5 5.7 52 30-81 12-64 (107)
57 3d2w_A TAR DNA-binding protein 99.6 3.9E-16 1.3E-20 83.8 5.5 48 29-81 7-54 (89)
58 1wez_A HnRNP H', FTP-3, hetero 99.6 4.1E-16 1.4E-20 85.6 5.7 50 30-81 12-61 (102)
59 3q2s_C Cleavage and polyadenyl 99.6 5E-16 1.7E-20 95.8 6.6 50 32-81 67-118 (229)
60 2ywk_A Putative RNA-binding pr 99.6 5.4E-16 1.8E-20 83.5 6.0 51 30-81 13-63 (95)
61 2jwn_A Embryonic polyadenylate 99.6 2.4E-16 8.1E-21 88.7 4.6 51 31-81 34-84 (124)
62 1u6f_A Tcubp1, RNA-binding pro 99.6 4.2E-16 1.4E-20 89.2 5.7 52 30-81 39-90 (139)
63 2dnl_A Cytoplasmic polyadenyla 99.6 4E-16 1.4E-20 86.9 5.5 50 31-81 6-58 (114)
64 2cpy_A RNA-binding protein 12; 99.6 2.9E-16 1E-20 87.5 4.8 51 30-81 12-63 (114)
65 2cpf_A RNA binding motif prote 99.6 4E-16 1.4E-20 84.5 5.1 51 31-81 3-56 (98)
66 1l3k_A Heterogeneous nuclear r 99.6 5.5E-16 1.9E-20 92.1 5.8 52 30-81 10-61 (196)
67 3ulh_A THO complex subunit 4; 99.6 9.2E-16 3.1E-20 84.2 6.3 52 29-81 25-76 (107)
68 2kxn_B Transformer-2 protein h 99.6 5.6E-16 1.9E-20 88.3 5.6 52 30-81 43-94 (129)
69 1wi8_A EIF-4B, eukaryotic tran 99.6 6.6E-16 2.3E-20 84.6 5.7 50 31-81 13-63 (104)
70 2fy1_A RNA-binding motif prote 99.6 9.4E-16 3.2E-20 85.8 6.4 50 31-81 5-54 (116)
71 4f25_A Polyadenylate-binding p 99.6 6.4E-16 2.2E-20 86.2 5.7 48 32-81 4-51 (115)
72 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3E-16 1E-20 85.6 4.0 52 29-81 15-67 (100)
73 3ex7_B RNA-binding protein 8A; 99.6 7E-16 2.4E-20 86.9 5.4 52 30-81 19-70 (126)
74 1p1t_A Cleavage stimulation fa 99.6 6.3E-16 2.2E-20 84.4 5.0 50 32-81 7-56 (104)
75 2cjk_A Nuclear polyadenylated 99.6 6.3E-16 2.1E-20 89.9 5.3 50 32-81 2-51 (167)
76 2cpe_A RNA-binding protein EWS 99.6 6.5E-16 2.2E-20 85.6 5.1 52 30-81 12-71 (113)
77 2ki2_A SS-DNA binding protein 99.6 1.4E-16 4.6E-21 85.2 2.2 48 34-81 2-49 (90)
78 1x5o_A RNA binding motif, sing 99.6 1.4E-15 4.9E-20 84.3 6.5 50 31-81 23-72 (114)
79 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-15 4.1E-20 87.0 6.3 53 29-81 59-111 (140)
80 2dis_A Unnamed protein product 99.6 7E-16 2.4E-20 85.0 5.1 51 31-81 6-58 (109)
81 1sjq_A Polypyrimidine tract-bi 99.6 9E-16 3.1E-20 85.0 5.3 48 28-81 11-58 (105)
82 2krb_A Eukaryotic translation 99.6 8.4E-16 2.9E-20 80.8 4.9 47 33-81 1-53 (81)
83 2dha_A FLJ20171 protein; RRM d 99.6 1.7E-15 5.8E-20 85.9 6.3 51 30-81 20-74 (123)
84 2kn4_A Immunoglobulin G-bindin 99.6 9.4E-16 3.2E-20 89.2 5.3 51 31-81 68-118 (158)
85 2hgl_A HNRPF protein, heteroge 99.6 8.7E-16 3E-20 88.4 5.0 50 31-81 42-94 (136)
86 4a8x_A RNA-binding protein wit 99.6 9.7E-16 3.3E-20 81.3 4.8 51 31-81 2-53 (88)
87 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.5E-15 5.1E-20 89.3 6.0 51 31-81 70-120 (165)
88 2d9p_A Polyadenylate-binding p 99.6 2.1E-15 7.2E-20 82.3 6.1 49 31-81 13-61 (103)
89 2do0_A HnRNP M, heterogeneous 99.6 2.6E-15 8.9E-20 83.2 6.5 51 30-81 12-62 (114)
90 2ek1_A RNA-binding protein 12; 99.6 5E-16 1.7E-20 83.6 3.5 51 31-81 13-63 (95)
91 2db1_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 85.3 5.3 50 31-81 15-67 (118)
92 2kt5_A RNA and export factor-b 99.6 2.2E-15 7.7E-20 84.8 5.8 51 30-81 32-82 (124)
93 2hgm_A HNRPF protein, heteroge 99.6 2.8E-15 9.5E-20 85.3 6.1 50 30-81 39-90 (126)
94 2dgv_A HnRNP M, heterogeneous 99.6 4E-15 1.4E-19 79.6 6.4 50 30-81 5-54 (92)
95 2cqp_A RNA-binding protein 12; 99.6 7.3E-16 2.5E-20 83.5 3.2 51 31-81 13-63 (98)
96 1wel_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 86.7 3.5 52 30-81 22-73 (124)
97 2lmi_A GRSF-1, G-rich sequence 99.6 1E-15 3.5E-20 84.4 3.6 51 30-81 8-61 (107)
98 3nmr_A Cugbp ELAV-like family 99.6 3.3E-15 1.1E-19 87.2 5.9 50 32-81 2-53 (175)
99 1fxl_A Paraneoplastic encephal 99.6 8E-15 2.7E-19 84.9 6.9 49 33-81 2-50 (167)
100 2nlw_A Eukaryotic translation 99.6 3.6E-15 1.2E-19 82.0 5.2 49 31-81 13-67 (105)
101 2ad9_A Polypyrimidine tract-bi 99.6 5.1E-15 1.8E-19 83.5 5.9 46 30-81 28-73 (119)
102 2lea_A Serine/arginine-rich sp 99.6 1.1E-15 3.9E-20 87.5 3.1 51 31-81 45-95 (135)
103 2hgn_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 87.3 3.9 50 30-81 43-92 (139)
104 3r27_A HnRNP L, heterogeneous 99.6 9.4E-15 3.2E-19 80.2 6.4 46 30-81 18-63 (100)
105 2dgw_A Probable RNA-binding pr 99.6 9.8E-15 3.4E-19 78.1 6.3 49 31-81 8-56 (91)
106 2dnn_A RNA-binding protein 12; 99.6 7E-15 2.4E-19 81.7 5.7 47 33-81 16-62 (109)
107 1b7f_A Protein (SXL-lethal pro 99.6 6E-15 2.1E-19 85.7 5.7 50 32-81 2-51 (168)
108 2cq1_A PTB-like protein L; RRM 99.6 8.3E-15 2.8E-19 80.5 5.8 45 31-81 13-57 (101)
109 2qfj_A FBP-interacting repress 99.6 5.4E-15 1.9E-19 88.9 5.4 57 25-81 20-76 (216)
110 2cq3_A RNA-binding protein 9; 99.5 1.8E-14 6E-19 78.6 6.8 50 30-81 12-61 (103)
111 1wf0_A TDP-43, TAR DNA-binding 99.5 4.9E-15 1.7E-19 78.9 4.3 46 31-81 3-48 (88)
112 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.3E-14 4.5E-19 79.2 5.9 50 30-81 12-61 (103)
113 2lcw_A RNA-binding protein FUS 99.3 4.6E-16 1.6E-20 86.7 0.0 52 30-81 4-63 (116)
114 2err_A Ataxin-2-binding protei 99.5 6.6E-15 2.2E-19 81.4 4.6 51 29-81 25-75 (109)
115 1wex_A Hypothetical protein (r 99.5 1.9E-14 6.5E-19 79.4 6.2 45 31-81 13-57 (104)
116 2dgx_A KIAA0430 protein; RRM d 99.5 9.4E-15 3.2E-19 79.1 4.8 49 30-81 6-58 (96)
117 1l3k_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 84.3 7.0 51 31-81 102-152 (196)
118 1x4d_A Matrin 3; structural ge 99.5 1.1E-14 3.8E-19 80.1 4.2 45 31-81 13-58 (102)
119 3pgw_S U1-70K; protein-RNA com 99.5 2.3E-14 7.8E-19 95.3 6.4 50 32-81 101-150 (437)
120 2f3j_A RNA and export factor b 99.5 1.8E-14 6.3E-19 85.8 5.2 50 31-81 86-135 (177)
121 2wbr_A GW182, gawky, LD47780P; 99.5 1.9E-14 6.5E-19 77.3 4.3 44 32-81 6-49 (89)
122 2cpi_A CCR4-NOT transcription 99.5 1.5E-14 5.3E-19 80.1 4.0 51 31-81 13-69 (111)
123 1fj7_A Nucleolin RBD1, protein 99.5 1.1E-15 3.8E-20 83.2 -0.8 50 31-81 15-64 (101)
124 1x4f_A Matrin 3; structural ge 99.5 2.2E-14 7.5E-19 80.2 4.4 46 30-81 22-68 (112)
125 2voo_A Lupus LA protein; RNA-b 99.5 6.2E-14 2.1E-18 84.5 6.6 50 31-81 107-156 (193)
126 3lqv_A PRE-mRNA branch site pr 99.5 8.7E-14 3E-18 77.2 6.4 48 31-81 6-53 (115)
127 1x4a_A Splicing factor, argini 99.5 9.6E-14 3.3E-18 76.4 6.3 49 30-81 19-67 (109)
128 2qfj_A FBP-interacting repress 99.5 1.6E-13 5.3E-18 82.5 7.7 53 29-81 121-173 (216)
129 2g4b_A Splicing factor U2AF 65 99.5 9.7E-14 3.3E-18 80.9 6.4 51 31-81 92-142 (172)
130 3md3_A Nuclear and cytoplasmic 99.5 1.2E-13 4.2E-18 79.8 6.7 52 30-81 84-135 (166)
131 2la4_A Nuclear and cytoplasmic 99.5 1.4E-13 4.8E-18 74.8 6.4 46 30-81 24-69 (101)
132 2a3j_A U1 small nuclear ribonu 99.5 7.1E-14 2.4E-18 79.5 5.4 49 30-81 26-78 (127)
133 2cjk_A Nuclear polyadenylated 99.5 3.5E-14 1.2E-18 82.4 4.1 50 32-81 86-135 (167)
134 2fc9_A NCL protein; structure 99.5 7.6E-14 2.6E-18 75.8 5.2 48 30-81 12-59 (101)
135 2cpx_A Hypothetical protein FL 99.5 3.6E-15 1.2E-19 82.8 -0.4 51 31-81 23-73 (115)
136 2yh0_A Splicing factor U2AF 65 99.5 1.9E-13 6.4E-18 81.2 6.9 51 31-81 112-162 (198)
137 3md3_A Nuclear and cytoplasmic 99.5 6.5E-14 2.2E-18 80.9 4.8 47 34-81 1-47 (166)
138 1nu4_A U1A RNA binding domain; 99.4 4.1E-14 1.4E-18 76.3 3.0 49 30-81 5-57 (97)
139 1x4c_A Splicing factor, argini 99.4 2.2E-13 7.6E-18 75.0 6.0 44 31-81 13-56 (108)
140 2jvo_A Nucleolar protein 3; nu 99.4 2.1E-13 7.1E-18 75.4 5.8 46 28-81 26-71 (108)
141 1x4g_A Nucleolysin TIAR; struc 99.4 2.6E-13 8.7E-18 74.8 6.1 48 28-81 20-67 (109)
142 1fxl_A Paraneoplastic encephal 99.4 3.4E-13 1.2E-17 77.9 6.9 51 31-81 86-136 (167)
143 1b7f_A Protein (SXL-lethal pro 99.4 3.6E-13 1.2E-17 78.1 7.0 51 31-81 87-137 (168)
144 2hvz_A Splicing factor, argini 99.4 1.2E-13 4E-18 75.1 4.6 43 34-81 1-43 (101)
145 2jvr_A Nucleolar protein 3; RN 99.4 1E-13 3.6E-18 77.2 4.1 49 29-81 24-73 (111)
146 2ytc_A PRE-mRNA-splicing facto 99.4 2.8E-13 9.6E-18 71.4 5.6 45 31-81 10-54 (85)
147 2fc8_A NCL protein; structure 99.4 1.5E-13 5E-18 74.8 4.5 49 30-81 12-60 (102)
148 1why_A Hypothetical protein ri 99.4 2.8E-13 9.6E-18 73.1 5.6 45 31-81 15-59 (97)
149 2cpj_A Non-POU domain-containi 99.4 2.4E-13 8E-18 73.7 5.2 46 30-81 12-57 (99)
150 2xnq_A Nuclear polyadenylated 99.4 3.7E-13 1.3E-17 73.0 6.0 47 27-81 16-63 (97)
151 2i2y_A Fusion protein consists 99.4 1.5E-13 5.1E-18 79.4 4.4 47 30-81 70-116 (150)
152 2dnq_A RNA-binding protein 4B; 99.4 4.2E-13 1.4E-17 71.6 5.8 44 30-81 5-48 (90)
153 2e5g_A U6 snRNA-specific termi 99.4 7.1E-13 2.4E-17 71.2 6.6 46 31-81 6-51 (94)
154 3nmr_A Cugbp ELAV-like family 99.4 3.9E-13 1.3E-17 78.3 6.0 49 32-81 94-142 (175)
155 2e5j_A Methenyltetrahydrofolat 99.4 4.3E-13 1.5E-17 72.5 4.8 46 31-81 17-62 (97)
156 2kvi_A Nuclear polyadenylated 99.4 5.7E-13 1.9E-17 71.9 5.3 44 30-81 7-51 (96)
157 3egn_A RNA-binding protein 40; 99.4 3.4E-14 1.2E-18 81.6 0.3 51 31-81 43-98 (143)
158 3smz_A Protein raver-1, ribonu 99.4 9.9E-13 3.4E-17 82.2 6.9 51 31-81 93-143 (284)
159 1fjc_A Nucleolin RBD2, protein 99.4 1E-13 3.5E-18 74.6 1.7 46 31-81 14-59 (96)
160 1whx_A Hypothetical protein ri 99.4 3.4E-13 1.2E-17 74.8 3.9 44 32-81 9-52 (111)
161 3sde_A Paraspeckle component 1 99.4 1E-12 3.6E-17 81.7 6.5 49 32-81 95-143 (261)
162 2cq2_A Hypothetical protein LO 99.4 3.7E-13 1.3E-17 75.4 3.5 45 31-81 23-69 (114)
163 3beg_B Splicing factor, argini 99.4 4.1E-13 1.4E-17 74.8 3.6 44 31-81 14-57 (115)
164 1wf1_A RNA-binding protein RAL 99.4 1.1E-12 3.8E-17 72.3 5.3 43 31-81 25-68 (110)
165 1wg1_A KIAA1579 protein, homol 99.3 1.6E-12 5.6E-17 69.1 5.3 44 31-81 3-46 (88)
166 3tyt_A Heterogeneous nuclear r 99.3 1.8E-12 6.1E-17 78.6 5.9 46 31-81 2-48 (205)
167 3pgw_A U1-A; protein-RNA compl 99.3 2E-12 6.9E-17 80.7 6.2 49 30-81 6-58 (282)
168 4f02_A Polyadenylate-binding p 99.3 1.9E-12 6.4E-17 78.4 5.8 49 31-81 101-149 (213)
169 2hzc_A Splicing factor U2AF 65 99.3 1.2E-12 4E-17 69.1 4.2 45 31-81 4-59 (87)
170 1sjr_A Polypyrimidine tract-bi 99.3 1.8E-12 6.1E-17 76.6 4.9 47 31-81 44-90 (164)
171 2dgu_A Heterogeneous nuclear r 99.3 2E-12 6.8E-17 70.5 4.7 43 31-81 9-51 (103)
172 3tyt_A Heterogeneous nuclear r 99.3 1.5E-12 5.3E-17 78.9 4.2 49 31-81 121-171 (205)
173 2cqh_A IGF-II mRNA-binding pro 99.3 1.6E-12 5.5E-17 69.6 3.8 44 31-81 6-50 (93)
174 2cpd_A Apobec-1 stimulating pr 99.3 4.9E-12 1.7E-16 68.4 5.7 44 30-81 12-57 (99)
175 3zzy_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 72.5 5.5 47 30-81 25-72 (130)
176 2ghp_A U4/U6 snRNA-associated 99.3 3E-12 1E-16 80.3 5.1 53 29-81 206-260 (292)
177 2dnp_A RNA-binding protein 14; 99.3 3.4E-12 1.2E-16 68.0 4.5 44 30-81 6-49 (90)
178 2dgt_A RNA-binding protein 30; 99.3 4.5E-12 1.5E-16 67.7 5.0 44 30-81 7-50 (92)
179 2ghp_A U4/U6 snRNA-associated 99.3 4E-12 1.4E-16 79.7 5.4 52 28-81 36-87 (292)
180 2adc_A Polypyrimidine tract-bi 99.3 5E-12 1.7E-16 77.3 5.3 47 30-81 31-78 (229)
181 2e44_A Insulin-like growth fac 99.3 2.4E-12 8.1E-17 69.2 3.2 47 31-81 13-60 (96)
182 1x5p_A Negative elongation fac 99.2 1.5E-11 5E-16 66.4 5.6 44 30-81 12-55 (97)
183 3smz_A Protein raver-1, ribonu 99.2 1.6E-11 5.3E-16 76.7 6.3 50 31-81 182-232 (284)
184 1fje_B Nucleolin RBD12, protei 99.2 5.3E-13 1.8E-17 78.1 -1.0 51 30-81 10-60 (175)
185 2e5i_A Heterogeneous nuclear r 99.2 2.6E-11 9E-16 68.7 6.0 43 33-81 25-68 (124)
186 1qm9_A Polypyrimidine tract-bi 99.2 8.7E-12 3E-16 74.3 4.1 45 32-81 2-47 (198)
187 3u1l_A PRE-mRNA-splicing facto 99.2 1.5E-11 5.2E-16 76.4 5.1 47 29-81 130-185 (240)
188 3sde_A Paraspeckle component 1 99.2 1.6E-11 5.6E-16 76.3 4.1 46 30-81 19-64 (261)
189 1fje_B Nucleolin RBD12, protei 99.2 2.8E-11 9.6E-16 70.7 4.8 46 31-81 97-142 (175)
190 2pe8_A Splicing factor 45; RRM 99.2 1.2E-10 4E-15 64.2 6.8 51 31-81 6-62 (105)
191 2bz2_A Negative elongation fac 99.2 4.3E-11 1.5E-15 67.3 5.1 44 30-81 36-79 (121)
192 3tht_A Alkylated DNA repair pr 99.2 2.6E-11 8.8E-16 78.8 4.6 46 30-81 15-62 (345)
193 3pgw_A U1-A; protein-RNA compl 99.2 6.6E-11 2.3E-15 73.8 6.0 46 31-81 205-250 (282)
194 2yh0_A Splicing factor U2AF 65 99.1 2.1E-10 7.2E-15 67.9 4.8 44 32-81 3-57 (198)
195 2g4b_A Splicing factor U2AF 65 99.0 2.3E-10 7.9E-15 66.4 4.5 44 32-81 3-57 (172)
196 1qm9_A Polypyrimidine tract-bi 99.0 3.6E-10 1.2E-14 67.2 5.2 46 31-81 118-164 (198)
197 2adc_A Polypyrimidine tract-bi 99.0 7E-10 2.4E-14 67.7 5.9 46 31-81 149-195 (229)
198 2diu_A KIAA0430 protein; struc 99.0 8.5E-10 2.9E-14 59.8 5.0 41 31-81 6-52 (96)
199 2d9o_A DNAJ (HSP40) homolog, s 98.9 1.7E-09 5.8E-14 59.1 4.8 34 43-81 27-60 (100)
200 1jmt_A Splicing factor U2AF 35 98.8 4.4E-10 1.5E-14 61.7 0.1 43 38-81 20-74 (104)
201 2dit_A HIV TAT specific factor 98.8 9.3E-09 3.2E-13 56.7 5.4 48 30-81 12-70 (112)
202 1owx_A Lupus LA protein, SS-B, 98.8 7E-09 2.4E-13 58.5 4.7 41 30-70 15-56 (121)
203 3v4m_A Splicing factor U2AF 65 98.7 1.4E-08 4.8E-13 55.7 4.5 51 31-81 3-65 (105)
204 3ue2_A Poly(U)-binding-splicin 98.7 1.8E-08 6.2E-13 56.4 4.4 51 31-81 18-77 (118)
205 3s6e_A RNA-binding protein 39; 98.0 4.9E-06 1.7E-10 46.2 3.0 47 31-81 5-61 (114)
206 3dxb_A Thioredoxin N-terminall 97.8 3.3E-05 1.1E-09 46.7 4.5 36 46-81 142-181 (222)
207 2dnr_A Synaptojanin-1; RRM dom 97.1 0.00094 3.2E-08 35.7 4.1 39 31-69 5-51 (91)
208 1ufw_A Synaptojanin 2; RNP dom 96.2 0.0037 1.3E-07 33.6 2.7 39 31-69 13-60 (95)
209 3ctr_A Poly(A)-specific ribonu 96.0 0.023 7.8E-07 30.8 5.1 34 34-69 7-40 (101)
210 3pq1_A Poly(A) RNA polymerase; 95.8 0.006 2.1E-07 41.1 3.0 45 31-81 51-95 (464)
211 1whv_A Poly(A)-specific ribonu 95.8 0.01 3.5E-07 32.1 3.3 35 32-68 15-49 (100)
212 1uw4_A UPF3X; nonsense mediate 95.4 0.059 2E-06 28.6 5.3 38 34-71 2-39 (91)
213 2l9w_A U4/U6 snRNA-associated- 94.2 0.12 3.9E-06 28.7 4.5 38 32-69 20-62 (117)
214 2dhx_A Poly (ADP-ribose) polym 93.4 0.33 1.1E-05 26.4 5.5 35 31-65 6-45 (104)
215 4f25_A Polyadenylate-binding p 91.4 0.05 1.7E-06 29.4 0.6 19 31-49 95-113 (115)
216 2l08_A Regulator of nonsense t 87.0 0.39 1.3E-05 25.7 2.0 29 32-60 8-36 (97)
217 3mfb_A Uncharacterized protein 78.4 5.8 0.0002 23.0 4.8 36 45-80 3-41 (157)
218 1wey_A Calcipressin 1; structu 76.4 3.4 0.00012 22.3 3.2 34 31-64 3-41 (104)
219 1wwh_A Nucleoporin 35, nucleop 71.0 5.3 0.00018 22.1 3.3 34 31-65 22-55 (119)
220 3fut_A Dimethyladenosine trans 68.9 4.7 0.00016 25.1 3.1 34 34-68 111-144 (271)
221 3ts2_A Protein LIN-28 homolog 68.6 1.2 4E-05 25.5 0.2 25 49-81 3-27 (148)
222 3uzu_A Ribosomal RNA small sub 65.4 2.5 8.5E-05 26.4 1.3 36 34-69 115-150 (279)
223 3d45_A Poly(A)-specific ribonu 65.2 14 0.00049 25.0 5.1 34 33-68 440-473 (507)
224 3tqs_A Ribosomal RNA small sub 56.1 2.7 9.4E-05 25.8 0.3 35 35-69 98-132 (255)
225 1qyr_A KSGA, high level kasuga 53.1 10 0.00036 23.1 2.6 34 34-67 91-124 (252)
226 3ftd_A Dimethyladenosine trans 52.5 8.1 0.00028 23.5 2.0 35 34-68 96-130 (249)
227 1i4w_A Mitochondrial replicati 49.5 7.7 0.00026 25.2 1.6 22 35-56 144-165 (353)
228 3aqq_A Calcium-regulated heat 44.4 15 0.00051 21.0 2.1 7 75-81 74-80 (147)
229 2yty_A Cold shock domain-conta 43.9 6.8 0.00023 20.3 0.6 7 75-81 28-34 (88)
230 2jsh_A Appetite-regulating hor 43.9 11 0.00038 15.1 1.1 22 40-61 2-23 (26)
231 2ytx_A Cold shock domain-conta 42.7 7.2 0.00025 20.5 0.6 8 74-81 27-34 (97)
232 1wfq_A UNR protein; beta-barre 41.5 7.7 0.00027 20.1 0.6 7 75-81 28-34 (89)
233 2cs4_A Protein C12ORF2; GTP bi 33.7 17 0.00057 19.3 1.1 22 38-59 21-43 (95)
234 2bh8_A 1B11; transcription, mo 27.0 20 0.00069 18.8 0.7 7 75-81 28-34 (101)
235 3p3d_A Nucleoporin 53; structu 25.0 50 0.0017 18.5 2.1 30 32-62 6-35 (132)
236 3pc6_A DNA repair protein XRCC 24.9 77 0.0026 16.7 2.8 29 32-60 9-37 (104)
237 4aj5_1 SKA3, spindle and kinet 23.5 32 0.0011 18.4 1.1 11 48-58 91-101 (101)
238 1eij_A Hypothetical protein MT 22.0 66 0.0023 16.4 2.1 19 39-57 50-68 (80)
239 2q2k_A Hypothetical protein; p 20.8 16 0.00054 17.5 -0.4 21 37-57 42-62 (70)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=95.67 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=49.3
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~ 67 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEE
Confidence 34567899999999999999999999999999999999999999999999995
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=93.91 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++.++|||+|||+.+++++|+++|++||.|.++.|++|+.||+++|||||+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~ 54 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVL 54 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEE
Confidence 567899999999999999999999999999999999999999999999995
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=93.73 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=46.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGD--IKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..-.+|||+|||+.+|+++|+++|++||. +.+|++++|+.||+++|||||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~ 59 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQ 59 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEE
Confidence 34578999999999999999999999995 6799999999999999999995
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=93.93 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=46.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+++|||+|||+.+++++|+++|++|| .|.+|++++|+.||+++|||||+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~ 50 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVE 50 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEE
Confidence 46899999999999999999999999 89999999999999999999995
No 5
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1e-17 Score=97.65 Aligned_cols=74 Identities=77% Similarity=1.272 Sum_probs=52.0
Q ss_pred CccCccccccCCCCChHHHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 8 SVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......++++................++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 87 (156)
T 1h2v_Z 14 YVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87 (156)
T ss_dssp -------------------CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ccccccccccccCCChhhhcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 34455566666666666666666788999999999999999999999999999999999999999999999995
No 6
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.7e-17 Score=88.25 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=49.7
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 59 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 59 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEE
Confidence 34677899999999999999999999999999999999999999999999995
No 7
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=90.78 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=46.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||+|.+|.++.|+. |+++|||||+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~ 58 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVV 58 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEE
Confidence 3457899999999999999999999999999999999986 9999999995
No 8
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=90.85 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=46.8
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.....++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~ 73 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 73 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEE
Confidence 344567899999999999999999999999999999999999999999999995
No 9
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.8e-17 Score=88.16 Aligned_cols=48 Identities=33% Similarity=0.551 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCG--DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+|||+|||+++++++|+++|++|| .|.++.++.|+.+|+++|||||+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~ 51 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVG 51 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEE
Confidence 4799999999999999999999999 99999999999999999999996
No 10
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=86.17 Aligned_cols=51 Identities=29% Similarity=0.374 Sum_probs=48.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 53 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVD 53 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEE
Confidence 567899999999999999999999999999999999999999999999995
No 11
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-18 Score=95.99 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR--IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|.+||.|.. |+|++|+.+|+++|||||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~ 73 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQ 73 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEE
Confidence 56789999999999999999999999999976 9999999999999999995
No 12
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.4e-17 Score=92.72 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNL----SYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..|||+|| |+.+++++|+.+|++||+|.++.++.|+.||+++|||||+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVe 54 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIK 54 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEE
Confidence 68999999 9999999999999999999999999999999999999995
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=86.72 Aligned_cols=51 Identities=29% Similarity=0.558 Sum_probs=48.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 58 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 58 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEE
Confidence 567899999999999999999999999999999999999999999999995
No 14
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=87.65 Aligned_cols=52 Identities=33% Similarity=0.438 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 63 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVR 63 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEE
Confidence 3567889999999999999999999999999999999999999999999995
No 15
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=8.5e-17 Score=94.33 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=46.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCG--DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+++++++|+++|++|| .|.+|.++.|+.+|+++|||||+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~ 105 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVV 105 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEE
Confidence 457999999999999999999999999 99999999999999999999995
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=84.96 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 54 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVS 54 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEE
Confidence 457899999999999999999999999999999999999999999999995
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=85.33 Aligned_cols=51 Identities=31% Similarity=0.541 Sum_probs=48.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 53 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFIT 53 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEE
Confidence 567899999999999999999999999999999999999999999999995
No 18
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.8e-17 Score=84.01 Aligned_cols=48 Identities=33% Similarity=0.620 Sum_probs=46.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~ 48 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 48 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEE
Confidence 479999999999999999999999999999999999999999999996
No 19
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=86.62 Aligned_cols=52 Identities=23% Similarity=0.553 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIK-RIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|. .+.++.++.+|+++|||||+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~ 58 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVE 58 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEE
Confidence 35678999999999999999999999999999 99999999999999999995
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=1.9e-17 Score=90.55 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSY------YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+ .+++++|+++|++||.|.+|.|+.|+.||+++|||||+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~ 60 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVE 60 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEE
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEE
Confidence 457899999999 99999999999999999999999999999999999995
No 21
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=86.22 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR--------IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+++|++||.|.. ++++.++.+|+++|||||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~ 69 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVS 69 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEE
Confidence 456789999999999999999999999999999 9999999999999999995
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=1.7e-16 Score=83.55 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.+|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 49 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 49 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEE
Confidence 3589999999999999999999999999999999999999999999995
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=1.5e-16 Score=86.01 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=47.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 50 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIE 50 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEE
Confidence 5789999999999999999999999999999999999999999999995
No 24
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=88.51 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 63 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQ 63 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.1e-16 Score=84.59 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 55 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 55 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 26
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=87.43 Aligned_cols=52 Identities=31% Similarity=0.535 Sum_probs=49.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~ 64 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVK 64 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 27
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=2.6e-17 Score=90.34 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 61 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 61 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 28
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.6e-16 Score=96.48 Aligned_cols=51 Identities=33% Similarity=0.526 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++|||+|||+++++++|+++|++||+|.+|+|++|+.+|+++|||||+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~ 63 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN 63 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccce
Confidence 456899999999999999999999999999999999999999999999995
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-17 Score=88.23 Aligned_cols=52 Identities=31% Similarity=0.536 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 61 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVR 61 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.6e-16 Score=88.68 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=48.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~ 88 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVS 88 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 31
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=88.08 Aligned_cols=52 Identities=29% Similarity=0.507 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 65 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 65 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=86.89 Aligned_cols=51 Identities=27% Similarity=0.420 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 71 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 71 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEE
Confidence 456789999999999999999999999999999999999999999999995
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=6.2e-16 Score=85.58 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=49.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 74 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFIT 74 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=85.74 Aligned_cols=51 Identities=37% Similarity=0.656 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 56 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 56 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEE
Confidence 567899999999999999999999999999999999999899999999995
No 35
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=3.1e-16 Score=83.45 Aligned_cols=50 Identities=36% Similarity=0.762 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 54 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 54 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEE
Confidence 35789999999999999999999999999999999999999999999995
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=86.44 Aligned_cols=52 Identities=31% Similarity=0.490 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 63 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 37
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.2e-16 Score=82.86 Aligned_cols=47 Identities=30% Similarity=0.531 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 47 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 47 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEE
Confidence 58999999999999999999999999999999999899999999995
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=86.42 Aligned_cols=52 Identities=38% Similarity=0.510 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFIS 63 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=86.11 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 60 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 60 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEE
Confidence 3567899999999999999999999999999999999999999999999996
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=85.62 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRI-IMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+ .++.++.+|+++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~ 54 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 54 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEE
Confidence 567899999999999999999999999999999 999999999999999995
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=2.7e-16 Score=87.51 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=48.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 73 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 73 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEE
Confidence 466899999999999999999999999999999999999999999999995
No 42
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=84.37 Aligned_cols=52 Identities=33% Similarity=0.579 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 64 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFIL 64 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEE
Confidence 3567899999999999999999999999999999999999999999999995
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=3.3e-16 Score=87.05 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 63 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 63 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEE
Confidence 4567899999999999999999999999999999999999899999999995
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=84.58 Aligned_cols=52 Identities=37% Similarity=0.480 Sum_probs=48.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 63 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 63 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEE
Confidence 3456889999999999999999999999999999999999999999999995
No 45
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.6e-16 Score=86.66 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=47.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 56 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVS 56 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEE
Confidence 456789999999999999999999999999999999998 99999999995
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=85.08 Aligned_cols=50 Identities=26% Similarity=0.429 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSK-CGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+ ||.|..+.++.++ +|+++|||||+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~ 57 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVK 57 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEE
Confidence 56789999999999999999999999 9999999999998 99999999995
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=4.7e-16 Score=85.16 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 62 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVK 62 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEE
Confidence 467899999999999999999999999999999999997 89999999995
No 48
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=9.1e-17 Score=83.22 Aligned_cols=47 Identities=34% Similarity=0.673 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 47 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 47 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEE
Confidence 58999999999999999999999999999999999999999999995
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=85.72 Aligned_cols=52 Identities=33% Similarity=0.585 Sum_probs=49.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 60 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 60 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=87.06 Aligned_cols=50 Identities=30% Similarity=0.520 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+.+|.+||.|..|.++.++.+|+++|||||+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 75 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 75 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEE
Confidence 45789999999999999999999999999999999999999999999995
No 51
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=86.75 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 73 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 73 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEE
Confidence 45789999999999999999999999999999999999999999999995
No 52
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=85.62 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR-IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||+.+++++|+++|.+||.|.. +.|+.+ .+|+++|||||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~ 63 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQ 63 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEE
Confidence 56789999999999999999999999999987 899998 799999999995
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=2.8e-16 Score=86.74 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=48.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 74 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 74 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEE
Confidence 3456889999999999999999999999999999999999999999999995
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=84.16 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=47.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 64 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVE 64 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEE
Confidence 3567899999999999999999999999999999999998 99999999995
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.4e-16 Score=84.48 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++|| |..|.++.++.+|+++|||||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~ 62 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVE 62 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEE
Confidence 4578999999999999999999999997 9999999999999999999995
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=85.55 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=48.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec-CCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD-KYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d-~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~ 64 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 64 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEE
Confidence 356789999999999999999999999999999999999 7899999999995
No 57
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=3.9e-16 Score=83.78 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=41.5
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......+|||+|||+++++++|+++|++||.|.+|.++.+ ++|||||+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~ 54 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVT 54 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEE
Confidence 3467889999999999999999999999999999999875 68999995
No 58
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=85.62 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=45.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.+ +|.|+.|+ +|+++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~ 61 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVE 61 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEE
Confidence 3566899999999999999999999999954 99999997 99999999995
No 59
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=5e-16 Score=95.79 Aligned_cols=50 Identities=32% Similarity=0.528 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCG--DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+||++.+++++|+++|++|| .|.+|.|++|+.+|+++|||||+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~ 118 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVG 118 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEE
Confidence 567899999999999999999999999 99999999999999999999995
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=83.49 Aligned_cols=51 Identities=33% Similarity=0.556 Sum_probs=47.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++. |+++|||||+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~ 63 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVC 63 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEE
Confidence 35668999999999999999999999999999999999974 9999999995
No 61
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=2.4e-16 Score=88.67 Aligned_cols=51 Identities=37% Similarity=0.733 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 84 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 84 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEE
Confidence 456899999999999999999999999999999999999999999999995
No 62
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=89.15 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=48.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|+.||.|.+|.++.++.+|+++|||||+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 90 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVK 90 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEE
Confidence 3466899999999999999999999999999999999999999999999995
No 63
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=86.91 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC---CCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYK---KTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~t---g~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~ 58 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLL 58 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEE
Confidence 4678999999999999999999999999999 889888877 7999999996
No 64
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=87.46 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=47.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDI-KRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|..||.| ..|.|+.|+ +|+++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~ 63 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQ 63 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEE
Confidence 3567899999999999999999999999999 899999998 99999999995
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=84.51 Aligned_cols=51 Identities=39% Similarity=0.556 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCC---CCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY---KKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~---tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++. |++++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~ 56 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 56 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEE
Confidence 4678999999999999999999999999999999999876 66999999995
No 66
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=5.5e-16 Score=92.12 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+++|++||.|.+|.++.++.+|+++|||||+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 61 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=9.2e-16 Score=84.22 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=48.6
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|.+||.|..+.++.++ +|+++|||||+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 76 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVH 76 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEE
Confidence 34567899999999999999999999999999999999998 99999999995
No 68
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=5.6e-16 Score=88.26 Aligned_cols=52 Identities=37% Similarity=0.480 Sum_probs=49.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~ 94 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 94 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 4567899999999999999999999999999999999999999999999995
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=84.56 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=47.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC-CCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYK-KTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~t-g~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+|| |..|.++.++.+ |+++|||||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~ 63 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAE 63 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEE
Confidence 4568999999999999999999999999 999999999888 9999999995
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=85.79 Aligned_cols=50 Identities=28% Similarity=0.545 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|++||.|..|.++.++ +|+++|||||+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~ 54 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFIT 54 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEE
Confidence 457899999999999999999999999999999999997 99999999995
No 71
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=6.4e-16 Score=86.25 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+|||+|||+++++++|+++|++||.|.+|+|+.|+ +.++|||||+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~ 51 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 51 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEE
Confidence 45689999999999999999999999999999999985 4589999995
No 72
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=85.62 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=45.2
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC-CCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK-YKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~-~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|++|| |.++.++.++ .+|+++|||||+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~ 67 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAE 67 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEE
Confidence 345678999999999999999999999999 9999999998 699999999995
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=7e-16 Score=86.93 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=48.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.+|+++|||||+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 70 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 70 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 3456799999999999999999999999999999999999999999999995
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-16 Score=84.43 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 56 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 56 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEE
Confidence 35789999999999999999999999999999999999999999999995
No 75
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=6.3e-16 Score=89.88 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 51 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 51 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEE
Confidence 45789999999999999999999999999999999999999999999995
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.5e-16 Score=85.63 Aligned_cols=52 Identities=31% Similarity=0.429 Sum_probs=48.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIK--------RIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|. .|.++.++.+|+++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~ 71 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 71 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEE
Confidence 35678999999999999999999999999999 69999999999999999995
No 77
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=1.4e-16 Score=85.20 Aligned_cols=48 Identities=44% Similarity=0.721 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 49 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVE 49 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEE
Confidence 579999999999999999999999999999999999999999999995
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=84.34 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ +|+++|||||+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~ 72 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFAR 72 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEE
Confidence 467899999999999999999999999999999999998 99999999995
No 79
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=87.00 Aligned_cols=53 Identities=34% Similarity=0.468 Sum_probs=49.6
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 111 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 111 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999995
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7e-16 Score=84.95 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=47.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-ecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGD-IKRIIMG-LDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~-~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||. |..+.++ .++.+|+++|||||+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~ 58 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVE 58 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEE
Confidence 45689999999999999999999999998 9999998 888899999999995
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9e-16 Score=84.97 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=43.0
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......++|||+|||+.+++++|+++|++||.|.+|.++++ |||||||
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVe 58 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIE 58 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEE
Confidence 34567899999999999999999999999999999999875 6999996
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-16 Score=80.83 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYT------TEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~ 53 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLE 53 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEE
Confidence 3689999999999 779999999999999999987 4689999999995
No 83
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=85.87 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDI----KRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....+|||+|||+.+++++|+++|++||.| ..|.|+.++ +|+++|||||+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~ 74 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVL 74 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEE
Confidence 3567899999999999999999999999975 689999994 89999999996
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=9.4e-16 Score=89.23 Aligned_cols=51 Identities=31% Similarity=0.601 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||+.+++++|+++|++||.|..+.++.|+.+|+++|||||+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~ 118 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 118 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEE
Confidence 457899999999999999999999999999999999999999999999995
No 85
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=8.7e-16 Score=88.38 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGD---IKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||+++++++|+++|++||. |..|.|+.|+. |+++|||||+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~ 94 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVE 94 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEE
Confidence 45689999999999999999999999999 89999999986 9999999995
No 86
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=81.30 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=47.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC-ccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT-PCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~-~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++. ++|||||+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~ 53 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVE 53 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEE
Confidence 3568999999999999999999999999999999999987776 89999995
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=1.5e-15 Score=89.30 Aligned_cols=51 Identities=25% Similarity=0.433 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|+++|||||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 120 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 120 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEE
Confidence 455689999999999999999999999999999999999999999999995
No 88
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=82.35 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=46.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..|.++.+ +|+++|||||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~ 61 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVC 61 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEE
Confidence 56789999999999999999999999999999999998 89999999995
No 89
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=83.21 Aligned_cols=51 Identities=31% Similarity=0.338 Sum_probs=47.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.|.++.++.++ +|+++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~ 62 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVT 62 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEE
Confidence 3567899999999999999999999999999999999997 69999999995
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=5e-16 Score=83.61 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+..++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~ 63 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEE
Confidence 456899999999999999999999999999999999999999999999995
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.4e-15 Score=85.33 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGD---IKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|+.||. |..|+|+.++. |+++|||||+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~ 67 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVE 67 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEE
Confidence 46789999999999999999999999998 89999999976 9999999995
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=2.2e-15 Score=84.77 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=48.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~ 82 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVH 82 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEE
Confidence 4567899999999999999999999999999999999998 99999999995
No 93
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.8e-15 Score=85.35 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=45.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIK--RIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~~~~d~~tg~~~G~~fVe 81 (81)
.....+|||+|||+.+++++|+++|++| .|. .|+|+.|+. |+++|||||+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~ 90 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQ 90 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEE
Confidence 3467899999999999999999999999 576 899999986 9999999995
No 94
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=4e-15 Score=79.63 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=46.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|+++|||||+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~ 54 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVK 54 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEE
Confidence 356789999999999999999999999999999999884 79999999995
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-16 Score=83.46 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||.|..+.++.++.+|+++|||||+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~ 63 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEE
Confidence 456789999999999999999999999999988899999999999999995
No 96
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.2e-16 Score=86.70 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=46.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....+|||+|||+.+++++|+++|..||.|..+.++.+..+|+++|||||+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~ 73 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 73 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEE
Confidence 3466899999999999999999999999999986677777899999999995
No 97
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=84.44 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=47.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGD---IKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....+|||+|||+++++++|+++|..||. |..|.|+.++. |+++|||||+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~ 61 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIE 61 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEE
Confidence 356789999999999999999999999998 89999999986 9999999995
No 98
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=3.3e-15 Score=87.17 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=47.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCC--CccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKK--TPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg--~~~G~~fVe 81 (81)
+.++|||+|||+.+++++|+++|++||.|.+++++.++.+| +++|||||+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~ 53 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 53 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEE
Confidence 56799999999999999999999999999999999998887 899999995
No 99
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=8e-15 Score=84.86 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.++|||+|||+.+++++|+++|+.||.|.++.++.++.+|+++|||||+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~ 50 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 50 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEE
Confidence 5789999999999999999999999999999999999899999999995
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=81.96 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=44.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYT------TEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+ ++++|+.+|++||.|..+.++ +.+|+++|||||+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~ 67 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLE 67 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEE
Confidence 446899999999999 789999999999999999988 4689999999995
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.1e-15 Score=83.53 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=42.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+++++|||+|||+.+++++|+++|++||.|.+|.++.+ |||||||
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVe 73 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIE 73 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEE
Confidence 356789999999999999999999999999999999875 7999996
No 102
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=1.1e-15 Score=87.53 Aligned_cols=51 Identities=31% Similarity=0.601 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 95 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 95 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEE
Confidence 456789999999999999999999999999999999999999999999995
No 103
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=1.9e-15 Score=87.30 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+++|++|| +.+|.|+.|+. |+++|||||+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~ 92 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVE 92 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEE
Confidence 35678999999999999999999999999 67999999975 9999999995
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=9.4e-15 Score=80.23 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+++++|||+|||+.+++++|+++|++||.|.++.+++ .|||||||
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVe 63 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVE 63 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEE
Confidence 45778999999999999999999999999999999875 36899996
No 105
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=78.07 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=46.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++| .|..+.++.+ .+|+++|||||+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~ 56 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVD 56 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEE
Confidence 467899999999999999999999999 9999999999 799999999995
No 106
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=81.74 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+|||+|||+.+++++|+++|++| .|.+|.|+.|+. |+++|||||+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~ 62 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVK 62 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEE
Confidence 4689999999999999999999999 899999999975 9999999995
No 107
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=6e-15 Score=85.67 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++|||||+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 51 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVD 51 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEE
Confidence 46899999999999999999999999999999999999999999999995
No 108
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-15 Score=80.47 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++|||+|||+.+++++|+++|++||.|.++.++.+ +||||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVe 57 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLE 57 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEE
Confidence 56789999999999999999999999999999988764 7999996
No 109
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=5.4e-15 Score=88.93 Aligned_cols=57 Identities=32% Similarity=0.513 Sum_probs=49.5
Q ss_pred HHhhhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 25 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.........++|||+|||+++++++|+++|+.||.|.+|.++.++.+|+++|||||+
T Consensus 20 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~ 76 (216)
T 2qfj_A 20 QRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE 76 (216)
T ss_dssp HHHHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEE
T ss_pred ccCcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEE
Confidence 334445567899999999999999999999999999999999999899999999995
No 110
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=78.64 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=45.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++. .++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~ 61 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVT 61 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEE
Confidence 45678999999999999999999999999999999999863 389999995
No 111
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.9e-15 Score=78.88 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=42.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 48 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 48 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEE
Confidence 45789999999999999999999999999999999765 68999995
No 112
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=79.16 Aligned_cols=50 Identities=38% Similarity=0.489 Sum_probs=45.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+ ++|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~ 61 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVE 61 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEE
Confidence 356789999999999999999999999999999999998643 68999995
No 113
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.6e-16 Score=86.72 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=48.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR--------IIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~tg~~~G~~fVe 81 (81)
..+.++|||+|||+.+++++|+++|++||.|.. +.++.++.+|+++|||||+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~ 63 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVS 63 (116)
Confidence 356789999999999999999999999999998 9999999999999999995
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.6e-15 Score=81.43 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=45.8
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ +.++|||||+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~ 75 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVT 75 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEE
Confidence 34567899999999999999999999999999999999985 4589999995
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=79.36 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++|||+|||+.+++++|+++|++||.|.++.++.+ |||||||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVe 57 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVE 57 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEE
Confidence 56789999999999999999999999999999998753 7999996
No 116
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.4e-15 Score=79.07 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=44.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLY----ELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+ ++|++||.|.+|.++.++.+ +|||||+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~ 58 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQ 58 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEE
Confidence 3467899999999999999999 99999999999999999765 8999995
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.52 E-value=3.4e-14 Score=84.34 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=47.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 152 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEE
Confidence 456899999999999999999999999999999999999999999999995
No 118
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=80.14 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++|||+|||+ .+++++|+++|++||.|.+|.++++ +||||||
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVe 58 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIE 58 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEE
Confidence 4678999999999 9999999999999999999999875 4899996
No 119
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=2.3e-14 Score=95.31 Aligned_cols=50 Identities=40% Similarity=0.598 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|..+|.+||.|..|.|+.++.+|+++|||||+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~ 150 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEe
Confidence 34799999999999999999999999999999999999999999999995
No 120
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=1.8e-14 Score=85.81 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=47.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..|.++.++ +|+++|||||+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~ 135 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVH 135 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEE
Confidence 456799999999999999999999999999999999998 99999999995
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=1.9e-14 Score=77.33 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+..|||+||++.+++++|+++|.+||+|.+++++. ++||||||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVe 49 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCK 49 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEE
Confidence 467899999999999999999999999999999865 58999996
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-14 Score=80.11 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEeecCCCC---CccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLY---ELFSKCGDIKRIIMGLDKYKK---TPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~d~~tg---~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+ ++|.+||.|.++.++.++.++ +++|||||+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~ 69 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVT 69 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEE
Confidence 456789999999999999999 999999999999999987754 556999995
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-15 Score=83.22 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|.. .++.++.+|+++|||||+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~ 64 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVD 64 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEE
Confidence 45689999999999999999999999999888 777887899999999995
No 124
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=80.18 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=41.3
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++++|||+|||++ +++++|+++|++||.|.+|.+++ ++||||||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVe 68 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIE 68 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEE
Confidence 356789999999998 99999999999999999999864 37999996
No 125
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=6.2e-14 Score=84.47 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..|+++++. +|+++||||||
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVe 156 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVV 156 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEE
Confidence 345889999999999999999999999999999999986 69999999996
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=8.7e-14 Score=77.17 Aligned_cols=48 Identities=31% Similarity=0.621 Sum_probs=43.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~ 53 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVV 53 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEE
Confidence 46789999999999999999999999999999999875 4569999995
No 127
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=76.42 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=43.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..|.+.. +++++|||||+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~ 67 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVE 67 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEE
Confidence 34678999999999999999999999999999999855 45689999995
No 128
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=1.6e-13 Score=82.51 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=49.6
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 173 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIE 173 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEE
Confidence 34577899999999999999999999999999999999999999999999995
No 129
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=9.7e-14 Score=80.89 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 346889999999999999999999999999999999998899999999995
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=79.76 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=48.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEE
Confidence 3457789999999999999999999999999999999999999999999995
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.4e-13 Score=74.77 Aligned_cols=46 Identities=30% Similarity=0.514 Sum_probs=41.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|.++.++ +++|||||+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~ 69 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIK 69 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEE
Confidence 3457899999999999999999999999999999987 457999995
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=79.51 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=42.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLY----ELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+|+++|||||+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~ 78 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIV 78 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEE
Confidence 3457899999999999999876 699999999998774 378899999995
No 133
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=3.5e-14 Score=82.42 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~ 135 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVT 135 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEE
Confidence 45789999999999999999999999999999999999899999999995
No 134
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=75.83 Aligned_cols=48 Identities=35% Similarity=0.480 Sum_probs=42.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|.+||.| .++.+ .+|+++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~ 59 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIE 59 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEE
Confidence 3567899999999999999999999999976 66777 689999999995
No 135
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.6e-15 Score=82.78 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=42.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||.|..+.+..+..+|+++|||||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~ 73 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 73 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEE
Confidence 467899999999999999999999999998544333333489999999995
No 136
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.9e-13 Score=81.22 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEE
Confidence 467899999999999999999999999999999999998899999999995
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.5e-14 Score=80.92 Aligned_cols=47 Identities=36% Similarity=0.565 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++|||||+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~ 47 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVE 47 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEE
Confidence 579999999999999999999999999999999996 58899999995
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=4.1e-14 Score=76.28 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=43.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLY----ELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.++.++|||+|||+.+++++|+ .+|++||.|..+.++. +|+++|||||+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~ 57 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVI 57 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEE
Confidence 3567899999999999999999 9999999999998863 67889999995
No 139
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=75.01 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||.|..|.++.+ |||||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~ 56 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVE 56 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEE
Confidence 46789999999999999999999999999999999876 899995
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=2.1e-13 Score=75.38 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=40.9
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......++|||+|||+.+++++|+++|++||.|..+.++ +|||||+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~ 71 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVE 71 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEE
Confidence 445678999999999999999999999999999999987 7899995
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=74.76 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=43.3
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......++|||+|||+.+++++|+.+|.+||.|..|.++.+ +|||||+
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~ 67 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVR 67 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEE
Confidence 44567889999999999999999999999999999999876 7899995
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=3.4e-13 Score=77.92 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=48.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 456889999999999999999999999999999999998899999999995
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=3.6e-13 Score=78.08 Aligned_cols=51 Identities=33% Similarity=0.476 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 137 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEE
Confidence 456899999999999999999999999999999999998899999999995
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=75.10 Aligned_cols=43 Identities=33% Similarity=0.588 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 43 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVE 43 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEE
Confidence 47999999999999999999999999999999887 68999995
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.43 E-value=1e-13 Score=77.23 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=42.3
Q ss_pred hcCCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+...+|||+|||+.+++++|+++|++|| .|..+.++. ++++|||||+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~ 73 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALE 73 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEE
Confidence 345678999999999999999999999999 899998853 3578999995
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=71.36 Aligned_cols=45 Identities=33% Similarity=0.499 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~ 54 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQ 54 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEE
Confidence 56789999999999999999999999999999999864 7999985
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=74.76 Aligned_cols=49 Identities=35% Similarity=0.411 Sum_probs=44.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|+.|+ .+.++.++.+++++|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~ 60 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVD 60 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEE
Confidence 45678999999999999999999999774 78888998899999999995
No 148
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-13 Score=73.15 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~ 59 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQ 59 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEE
Confidence 56689999999999999999999999999999998654 6899995
No 149
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.4e-13 Score=73.69 Aligned_cols=46 Identities=37% Similarity=0.611 Sum_probs=41.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~ 57 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIR 57 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEE
Confidence 356789999999999999999999999999999998754 6899995
No 150
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.43 E-value=3.7e-13 Score=72.99 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=40.4
Q ss_pred hhhcCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 27 EKLLRTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 27 ~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+..++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~ 63 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQ 63 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEE
Confidence 34456789999999998 99999999999999999999882 7899995
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.42 E-value=1.5e-13 Score=79.43 Aligned_cols=47 Identities=28% Similarity=0.530 Sum_probs=42.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+.+|++||.|.+++++.+ ++|||||+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~ 116 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVE 116 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEE
Confidence 356789999999999999999999999999999999876 58999995
No 152
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=71.55 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=40.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.++ +|||||+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~ 48 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVH 48 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEE
Confidence 3567899999999999999999999999999999986 6899985
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.1e-13 Score=71.23 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|.+||.|.+| +.++.+|+ ||||+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~ 51 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVE 51 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEE
Confidence 456799999999999999999999999999987 66777776 99985
No 154
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=3.9e-13 Score=78.29 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++|||||+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~ 142 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVT 142 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEE
Confidence 56789999999999999999999999999999999996 69999999995
No 155
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=72.47 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=40.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|. +.++. ++++|||||+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~ 62 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLH 62 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEE
Confidence 4578999999999999999999999999996 66664 4678999995
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.7e-13 Score=71.92 Aligned_cols=44 Identities=32% Similarity=0.653 Sum_probs=39.1
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.++.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~ 51 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQ 51 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEE
Confidence 46788999999999 99999999999999999999883 7899995
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=3.4e-14 Score=81.61 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=41.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE--Eee---cCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRII--MGL---DKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~--~~~---d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+.+|++||.|..+. ++. ...+|+++|||||+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~ 98 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIG 98 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEE
Confidence 4678999999999999999999999999987641 111 13479999999995
No 158
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.39 E-value=9.9e-13 Score=82.20 Aligned_cols=51 Identities=27% Similarity=0.364 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 143 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAE 143 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEE
Confidence 456799999999999999999999999999999999999999999999995
No 159
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=1e-13 Score=74.63 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 59 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 59 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEE
Confidence 456899999999999999999999999987665 3578999999995
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.4e-13 Score=74.78 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+.+|++||.|.+|.++. ++|||||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~ 52 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVE 52 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEE
Confidence 467899999999999999999999999999998864 47899995
No 161
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=1e-12 Score=81.73 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=46.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+|||+|||+.+++++|+++|+.||.|.+|.++.| .+|+++|||||+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~ 143 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVE 143 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEE
Confidence 5678999999999999999999999999999999999 599999999995
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.7e-13 Score=75.41 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=39.6
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYV--GNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++||| |||++.+++++|+++|++||.|.+|.++. .+|||||+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~ 69 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFAR 69 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEE
Confidence 45788999 77999999999999999999999998753 27899995
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=4.1e-13 Score=74.80 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=38.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||+.+++++|+++|.+||.|..|.++.+ |||||+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~ 57 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVE 57 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEE
Confidence 45689999999999999999999999999999999765 899995
No 164
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.36 E-value=1.1e-12 Score=72.26 Aligned_cols=43 Identities=23% Similarity=0.501 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~ 68 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQ 68 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEE
Confidence 45689999999999 999999999999999999988 57999995
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.35 E-value=1.6e-12 Score=69.09 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++| .|.++.+. +++|||||+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~ 46 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVT 46 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEE
Confidence 456889999999999999999999999 99999884 678999996
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.34 E-value=1.8e-12 Score=78.64 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=41.5
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLS-YYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~ 48 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVE 48 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEE
Confidence 357899999999 899999999999999999999998763 7999995
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=2e-12 Score=80.72 Aligned_cols=49 Identities=27% Similarity=0.435 Sum_probs=44.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLY----ELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+ ++|.+||.|.+|.+++ +|+++|||||+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~ 58 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVI 58 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEE
Confidence 3567899999999999999976 8999999999998875 78899999995
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.34 E-value=1.9e-12 Score=78.45 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=44.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+|||+.+++++|+++|++||.|..++|+.|+ +.++|||||+
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~ 149 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 149 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEE
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEE
Confidence 346789999999999999999999999999999999985 4579999995
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.2e-12 Score=69.13 Aligned_cols=45 Identities=33% Similarity=0.631 Sum_probs=40.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKC----G-------DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++| | .|.++.+..+ +|||||+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~ 59 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLE 59 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEE
Confidence 456899999999999999999999999 8 8999988754 7999995
No 170
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=1.8e-12 Score=76.62 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....+|||+||++.+++++|+++|++||.|.+|.+..+ +++||||||
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVe 90 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQ 90 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEE
Confidence 34467999999999999999999999999999998653 257999996
No 171
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.32 E-value=2e-12 Score=70.50 Aligned_cols=43 Identities=30% Similarity=0.464 Sum_probs=38.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+.++ +|||||+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~ 51 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIH 51 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEE
Confidence 456899999999999999999999999999999886 4599985
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.31 E-value=1.5e-12 Score=78.91 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=43.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDI--KRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+.++|||+|||+.+++++|+++|++||.| .+++++.++ |..+||||||
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~ 171 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLE 171 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEE
Confidence 456789999999999999999999999999 899998875 5667999996
No 173
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.6e-12 Score=69.58 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=37.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGD-IKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~ 50 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVD 50 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEE
Confidence 46689999999999999999999999999 6666552 47999996
No 174
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.9e-12 Score=68.42 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=39.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKC--GDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+.+|++| |.|..+.++ +|||||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~ 57 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVH 57 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEE
Confidence 3567899999999999999999999999 899998764 5799985
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.30 E-value=4.4e-12 Score=72.46 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=40.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccce-EEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGF-CFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~-~fVe 81 (81)
......|||+||++.+++++|+.+|++||.|.+|.++.+. +|| ||||
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVe 72 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQ 72 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEE
Confidence 3455678999999999999999999999999999887642 688 9996
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=3e-12 Score=80.25 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=46.5
Q ss_pred hcCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCC-CCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIMGLDKY-KKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~d~~-tg~~~G~~fVe 81 (81)
.....++|||+|||+. +++++|+++|++||.|..+.++.+.. ||+++|||||+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEE
Confidence 3456789999999999 99999999999999999999999876 69999999995
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.4e-12 Score=67.95 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=39.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+.+|++||.|..+.+++ |||||+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~ 49 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVH 49 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEE
Confidence 35678999999999999999999999999999999873 489985
No 178
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=67.73 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=39.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+.+++++|+++|++||.|..+.+++ +||||+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~ 50 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVH 50 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEE
Confidence 35678999999999999999999999999999999863 499985
No 179
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=4e-12 Score=79.71 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=42.5
Q ss_pred hhcCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 28 KLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 28 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
......++|||+|||+.+++++|+++|+.||.|..|.++.++.+ ++|||||+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~ 87 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIE 87 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEE
Confidence 34567889999999999999999999999999999999998633 47999995
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=5e-12 Score=77.31 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=43.2
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+..++|||+|||+ .+++++|+++|++||.|.+|+++.++ +|||||+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~ 78 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQ 78 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEE
Confidence 45778999999999 99999999999999999999998875 7899995
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-12 Score=69.21 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRI-IMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+.+|.+||.|..+ .++.++.+|. |||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~ 60 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVT 60 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEE
Confidence 356889999999999999999999999999999 5888876554 8874
No 182
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.5e-11 Score=66.36 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=38.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|+ .+++++|+++|++||.|..|.+. +++|||||+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~ 55 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVT 55 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEE
Confidence 356789999995 89999999999999999999883 568999995
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.24 E-value=1.6e-11 Score=76.75 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYT-TEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+ ++++|+++|+.||.|..+.++.++ +|+++|||||+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~ 232 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLE 232 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEE
Confidence 467899999999995 999999999999999999999996 89999999995
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=5.3e-13 Score=78.07 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=43.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+++|..||.+.. .++.+..+|+++|||||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~ 60 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVD 60 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEE
Confidence 356789999999999999999999999998766 345556789999999995
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=2.6e-11 Score=68.70 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=37.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccce-EEEC
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGF-CFLE 81 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~-~fVe 81 (81)
...|||+||++.+++++|+.+|++||.|.+|.++. + .|| ||||
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVe 68 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVE 68 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEE
Confidence 34578999999999999999999999999999865 2 286 9996
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=8.7e-12 Score=74.29 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=41.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+++|||+|||+ .+++++|+++|++||.|.+|.++.++ +|||||+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~ 47 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQ 47 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEE
Confidence 357899999999 99999999999999999999998875 7899985
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.21 E-value=1.5e-11 Score=76.43 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=41.3
Q ss_pred hcCCCCeEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 29 LLRTTSTLYVGNLSYYT---------TEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 29 ~~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.....++||||||+..+ ++++|+.+|++||+|.+|+++. ++|||||+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~ 185 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVK 185 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEE
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEE
Confidence 34577899999999998 7999999999999999999985 37999994
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=1.6e-11 Score=76.32 Aligned_cols=46 Identities=30% Similarity=0.556 Sum_probs=40.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|||+++++++|+.+|++||.|..|.+.+ ++|||||+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~ 64 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIR 64 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEE
Confidence 35667999999999999999999999999999999854 37999995
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.18 E-value=2.8e-11 Score=70.67 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=40.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 142 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 142 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEE
Confidence 356799999999999999999999999987765 4689999999995
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.17 E-value=1.2e-10 Score=64.16 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEeecCCC-CCccceEEEC
Q psy518 31 RTTSTLYVGNLSY-----YTTEEQLYELFSKCGDIKRIIMGLDKYK-KTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~~~~~~d~~t-g~~~G~~fVe 81 (81)
.+++.|++.|+.. +-++++|++.|++||.|.++.++.++.+ ++++|||||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~ 62 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLE 62 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEE
Confidence 5678999999962 2368999999999999999999998754 6899999995
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.17 E-value=4.3e-11 Score=67.26 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=38.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
....++|||+|+ .+++++|+++|++||.|.+|.+. +++|||||+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~ 79 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVT 79 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEE
Confidence 356789999995 69999999999999999999885 568999995
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=2.6e-11 Score=78.76 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=39.9
Q ss_pred cCCCCeEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGN--LSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++.+||||| |++.+++++|+++|++||.|.+|.+.. +||||||+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~ 62 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFAR 62 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEE
Confidence 35678999999 588999999999999999999987743 47999996
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.16 E-value=6.6e-11 Score=73.82 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||..+++++|+++|++||.|.+++++.++ +|||||+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~ 250 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVE 250 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEE
Confidence 456889999999999999999999999999999998664 6899995
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.06 E-value=2.1e-10 Score=67.91 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=36.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKC----G-------DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..++|||+|||+.+++++|+++|++| | .|.++.+ ++++|||||+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~ 57 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLE 57 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEE
Confidence 46899999999999999999999999 4 4555544 5668999995
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.04 E-value=2.3e-10 Score=66.42 Aligned_cols=44 Identities=32% Similarity=0.624 Sum_probs=37.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeecCCCCCccceEEEC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKC----G-------DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.++|||+|||+.+++++|+++|++| | .|.++.+. +++|||||+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~ 57 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLE 57 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEE
Confidence 46899999999999999999999999 6 66676653 458999995
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=3.6e-10 Score=67.21 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++.++|||+|||..+++++|+++|++|| .|..+.++.+. +|||||+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~ 164 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQ 164 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEE
Confidence 4578999999999999999999999999 99999986642 7899985
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.01 E-value=7e-10 Score=67.71 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCG-DIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|||+|||+.+++++|+++|++|| .|..+.++.+ .+|||||+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~ 195 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQ 195 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEE
Confidence 4578999999999999999999999999 9999998653 36899985
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=8.5e-10 Score=59.81 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=33.8
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTST-LYVGNLSYYTTEEQ----LYELFSKC-GDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~-l~v~nl~~~~~~~~----l~~~f~~~-G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++..+ |||+|||+.+++++ |+++|.+| |.|.+| +| |||||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~ 52 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILR 52 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEE
Confidence 34555 99999999999887 55899999 599998 44 999984
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=59.10 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 43 YYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 43 ~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
..+++++|+++|++||.|.+|.++ ++++||||||
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVe 60 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVE 60 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEE
Confidence 568999999999999999999987 4779999995
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.82 E-value=4.4e-10 Score=61.66 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=34.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 38 VGNLSYYTTEEQLYELF------------SKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 38 v~nl~~~~~~~~l~~~f------------~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
+.+|++.+++++|++.| ++||.|.+|.+++++ +|+++|||||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~ 74 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVK 74 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEE
Confidence 45677777777776666 999999999999986 58999999995
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=9.3e-09 Score=56.68 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=38.1
Q ss_pred cCCCCeEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 30 LRTTSTLYVGNLSYYTT-----------EEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...+++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~ 70 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVS 70 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEE
Confidence 35678999999944332 5799999999999999955 554 379999995
No 202
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=7e-09 Score=58.49 Aligned_cols=41 Identities=27% Similarity=0.129 Sum_probs=37.9
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCC
Q psy518 30 LRTTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIMGLDKY 70 (81)
Q Consensus 30 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~d~~ 70 (81)
.+.+..|||+||+.. +++++|+++|++||+|..|.++.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 467899999999999 99999999999999999999988864
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.74 E-value=1.4e-08 Score=55.71 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=40.7
Q ss_pred CCCCeEEEcCC--CCCC--------CHHHHHHHhhcCCCeeEEEEeecCCC--CCccceEEEC
Q psy518 31 RTTSTLYVGNL--SYYT--------TEEQLYELFSKCGDIKRIIMGLDKYK--KTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl--~~~~--------~~~~l~~~f~~~G~v~~~~~~~d~~t--g~~~G~~fVe 81 (81)
.+++.|.+.|+ +... .+++|++.|++||.|.++.|++++.+ ++++|||||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~ 65 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 65 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEE
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEE
Confidence 35678899998 3233 24689999999999999999998765 4689999995
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.71 E-value=1.8e-08 Score=56.43 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=41.8
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHhhcCCCeeEEEEeecCC----CCCccceEEEC
Q psy518 31 RTTSTLYVGNLSY--Y---TTEEQLYELFSKCGDIKRIIMGLDKY----KKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~--~---~~~~~l~~~f~~~G~v~~~~~~~d~~----tg~~~G~~fVe 81 (81)
++++.|++.|+-. + -.+++|++.|++||.|.+|.|+.++. +++++||+||+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~ 77 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 77 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEE
Confidence 4688999999832 2 23689999999999999999999865 46788999995
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.98 E-value=4.9e-06 Score=46.20 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYT----------TEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
.+++.|.+.|+=-.- .+++|++.|++||.|.++.+.++. ++|||||+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~ 61 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVK 61 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEE
Confidence 356778888872211 245789999999999999986653 48999985
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.78 E-value=3.3e-05 Score=46.67 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.6
Q ss_pred CHHHHHHHhhcCCCeeEEEEeec----CCCCCccceEEEC
Q psy518 46 TEEQLYELFSKCGDIKRIIMGLD----KYKKTPCGFCFLE 81 (81)
Q Consensus 46 ~~~~l~~~f~~~G~v~~~~~~~d----~~tg~~~G~~fVe 81 (81)
.+++|+..|++||.|.++.++++ +.+++++|++||+
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~ 181 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 181 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEE
Confidence 46789999999999999999855 4456899999995
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00094 Score=35.69 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCCCeEEEcCCCC----C-CCH---HHHHHHhhcCCCeeEEEEeecC
Q psy518 31 RTTSTLYVGNLSY----Y-TTE---EQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 31 ~~~~~l~v~nl~~----~-~~~---~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
++..+|+|.-.+. . ..+ .+|...|.+||+|..++++.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 4567888887662 2 232 5688999999999999998874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.0037 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHhhcCCCeeEEEEeecC
Q psy518 31 RTTSTLYVGNLSYY------TTE---EQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 31 ~~~~~l~v~nl~~~------~~~---~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
++..+|+|.-++.. ..+ .+|.+.|.+||+|..++++.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 56788999988642 232 4588899999999999998885
No 209
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.023 Score=30.79 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=28.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
+-+++ ++|.+....+|..+|++|| ...|.|+.|-
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT 40 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT 40 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC
Confidence 34556 9999999999999999999 5678887763
No 210
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.84 E-value=0.006 Score=41.14 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=33.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
...++|+|. .|...++.+|.++|++||+|.++.+-.++ | -|+.||
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~ve 95 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVE 95 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEE
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEE
Confidence 345789998 79999999999999999999998776543 2 477775
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.84 E-value=0.01 Score=32.09 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
..+-+++ ++|......+|..+|++|| -..|+++.|
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD 49 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD 49 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC
Confidence 3445666 9999999999999999999 456777766
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.42 E-value=0.059 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=30.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYK 71 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~~t 71 (81)
.+|.|++||+..|++++.+.+.....+.....+..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s 39 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTS 39 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccC
Confidence 47899999999999999999999887766666554433
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.12 Score=28.67 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEeecC
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKC-----GDIKRIIMGLDK 69 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~~~~~~d~ 69 (81)
..++|-+-|||-.++++.++.+.+++ |.+.++.+..|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH 62 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF 62 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC
Confidence 47889999999999999999999999 999999998874
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.43 E-value=0.33 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-----CCCeeEEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSK-----CGDIKRIIM 65 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~-----~G~v~~~~~ 65 (81)
....+|.|.|||..+.++.|.-+|+. -|+|..+..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 56789999999999999999999997 247777654
No 215
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=91.40 E-value=0.05 Score=29.36 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCeEEEcCCCCCCCHHH
Q psy518 31 RTTSTLYVGNLSYYTTEEQ 49 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~ 49 (81)
....+|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456799999999998764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.01 E-value=0.39 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDI 60 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 60 (81)
.+-+|.|+.||+..|++++.+.+...-.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~ 36 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAH 36 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCcc
Confidence 35679999999999999998887765443
No 217
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=78.42 E-value=5.8 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCHHHHHHHhhcCCCee---EEEEeecCCCCCccceEEE
Q psy518 45 TTEEQLYELFSKCGDIK---RIIMGLDKYKKTPCGFCFL 80 (81)
Q Consensus 45 ~~~~~l~~~f~~~G~v~---~~~~~~d~~tg~~~G~~fV 80 (81)
.++++|+++-.+.|.+. +.++..|..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 57899999999999774 5667777448999999874
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.36 E-value=3.4 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=25.3
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEE
Q psy518 31 RTTSTLYVGNLSYYT-T----EEQLYELFSKCGDIKRII 64 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~-~----~~~l~~~f~~~G~v~~~~ 64 (81)
.-.++|+|.||+.++ . .+.++++|..|+++....
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~ 41 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQ 41 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCccee
Confidence 346789999998766 2 257899999999766543
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=71.04 E-value=5.3 Score=22.06 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=27.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q psy518 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65 (81)
Q Consensus 31 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 65 (81)
.....|.|-+.|+.. ...+...|++||+|.+...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 346779999999885 6778889999999998765
No 220
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=68.90 E-value=4.7 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
.-+.|+|+|+.++...|..++.. ..+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46799999999999999999987 77777766654
No 221
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=68.60 E-value=1.2 Score=25.48 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=12.5
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCccceEEEC
Q psy518 49 QLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81 (81)
Q Consensus 49 ~l~~~f~~~G~v~~~~~~~d~~tg~~~G~~fVe 81 (81)
++..++...|.|+. ..+ .+|||||+
T Consensus 3 ~~~~l~~~~G~Vkw---fn~-----~kGfGFI~ 27 (148)
T 3ts2_A 3 DEPQLLHGAGICKW---FNV-----RMGFGFLS 27 (148)
T ss_dssp ---CCEEEEEEEEE---EET-----TTTEEEEE
T ss_pred cccccccceeEEEE---EEC-----CCCeeEEe
Confidence 44455555554443 322 27899984
No 222
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=65.38 E-value=2.5 Score=26.37 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=29.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
....|+|||+.++..-|..++.....+....++..+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 457899999999999999999876667777666543
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.23 E-value=14 Score=25.04 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 33 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
...++|+ +|..+...+|.++|+.||. .+|+++.|
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd 473 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD 473 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC
Confidence 3456666 8888889999999999994 46666655
No 224
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=56.11 E-value=2.7 Score=25.80 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=28.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecC
Q psy518 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d~ 69 (81)
-..|+|+|+.++...|..++.....+....++..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 45899999999999999999877777777666543
No 225
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=53.11 E-value=10 Score=23.09 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~ 67 (81)
.-+.|+|+|+.++...+..++.....+....++.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 4689999999999998888887544555555443
No 226
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=52.48 E-value=8.1 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec
Q psy518 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68 (81)
Q Consensus 34 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~d 68 (81)
..+.|+|+|+.++...+..++.....+....++..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence 45899999999999999999886555555555443
No 227
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=49.55 E-value=7.7 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q psy518 35 TLYVGNLSYYTTEEQLYELFSK 56 (81)
Q Consensus 35 ~l~v~nl~~~~~~~~l~~~f~~ 56 (81)
...|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999888877763
No 228
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=44.37 E-value=15 Score=20.98 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=5.9
Q ss_pred cceEEEC
Q psy518 75 CGFCFLE 81 (81)
Q Consensus 75 ~G~~fVe 81 (81)
||||||+
T Consensus 74 KGfGFI~ 80 (147)
T 3aqq_A 74 KGHGFIT 80 (147)
T ss_dssp TTEEEEE
T ss_pred CCeEEec
Confidence 8999984
No 229
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=43.94 E-value=6.8 Score=20.29 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=5.8
Q ss_pred cceEEEC
Q psy518 75 CGFCFLE 81 (81)
Q Consensus 75 ~G~~fVe 81 (81)
+|||||+
T Consensus 28 kGfGFI~ 34 (88)
T 2yty_A 28 DNFGFIE 34 (88)
T ss_dssp SSEEEEE
T ss_pred CCccEEe
Confidence 6999984
No 230
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=43.86 E-value=11 Score=15.13 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHhhcCCCee
Q psy518 40 NLSYYTTEEQLYELFSKCGDIK 61 (81)
Q Consensus 40 nl~~~~~~~~l~~~f~~~G~v~ 61 (81)
|.|+++.-..-.+-|++||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 5567766666667778888653
No 231
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=42.70 E-value=7.2 Score=20.54 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=6.3
Q ss_pred ccceEEEC
Q psy518 74 PCGFCFLE 81 (81)
Q Consensus 74 ~~G~~fVe 81 (81)
.+|||||+
T Consensus 27 ~KGfGFI~ 34 (97)
T 2ytx_A 27 KEAFGFIE 34 (97)
T ss_dssp CSSEEEEE
T ss_pred eCCceEEe
Confidence 47999984
No 232
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=41.55 E-value=7.7 Score=20.12 Aligned_cols=7 Identities=14% Similarity=0.691 Sum_probs=5.9
Q ss_pred cceEEEC
Q psy518 75 CGFCFLE 81 (81)
Q Consensus 75 ~G~~fVe 81 (81)
+|||||+
T Consensus 28 KGfGFI~ 34 (89)
T 1wfq_A 28 TSYGFIQ 34 (89)
T ss_dssp SSEEEEE
T ss_pred CCeeEEe
Confidence 7999984
No 233
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.68 E-value=17 Score=19.30 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=14.5
Q ss_pred EcCCCCCCCHHHHHH-HhhcCCC
Q psy518 38 VGNLSYYTTEEQLYE-LFSKCGD 59 (81)
Q Consensus 38 v~nl~~~~~~~~l~~-~f~~~G~ 59 (81)
|.++...+|-.++-. +.+..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 346788889877655 4454554
No 234
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=26.98 E-value=20 Score=18.76 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=5.7
Q ss_pred cceEEEC
Q psy518 75 CGFCFLE 81 (81)
Q Consensus 75 ~G~~fVe 81 (81)
+|||||+
T Consensus 28 kGfGFI~ 34 (101)
T 2bh8_A 28 KGFGFIT 34 (101)
T ss_dssp GTEEEEE
T ss_pred CCCEEEE
Confidence 7899983
No 235
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=25.05 E-value=50 Score=18.49 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKR 62 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 62 (81)
....|.|-+.|+.. ...+...|++||.|.+
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILE 35 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCS
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEee
Confidence 34568888887765 4667778999998866
No 236
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=24.94 E-value=77 Score=16.70 Aligned_cols=29 Identities=3% Similarity=-0.051 Sum_probs=22.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCe
Q psy518 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDI 60 (81)
Q Consensus 32 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 60 (81)
.+.++|+.+..+......|+.++-.||..
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 57889998887655667889999888743
No 237
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.47 E-value=32 Score=18.42 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=7.5
Q ss_pred HHHHHHhhcCC
Q psy518 48 EQLYELFSKCG 58 (81)
Q Consensus 48 ~~l~~~f~~~G 58 (81)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45778888886
No 238
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.98 E-value=66 Score=16.37 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=16.6
Q ss_pred cCCCCCCCHHHHHHHhhcC
Q psy518 39 GNLSYYTTEEQLYELFSKC 57 (81)
Q Consensus 39 ~nl~~~~~~~~l~~~f~~~ 57 (81)
|.|+..++++.|..++.+.
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999999875
No 239
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=20.79 E-value=16 Score=17.47 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=14.8
Q ss_pred EEcCCCCCCCHHHHHHHhhcC
Q psy518 37 YVGNLSYYTTEEQLYELFSKC 57 (81)
Q Consensus 37 ~v~nl~~~~~~~~l~~~f~~~ 57 (81)
|+.|+|..+....+++.+.+|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 567888888777776665544
Done!