Your job contains 1 sequence.
>psy518
MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI
KRIIMGLDKYKKTPCGFCFLE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy518
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp... 333 3.8e-30 1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 314 3.9e-28 1
ZFIN|ZDB-GENE-020419-31 - symbol:ncbp2 "nuclear cap bindi... 313 5.0e-28 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 312 6.4e-28 1
UNIPROTKB|C0H859 - symbol:ncbp2 "Nuclear cap-binding prot... 310 1.0e-27 1
UNIPROTKB|C1BY64 - symbol:ncbp2 "Nuclear cap-binding prot... 310 1.0e-27 1
UNIPROTKB|Q3ZBJ1 - symbol:NCBP2 "Nuclear cap-binding prot... 309 1.3e-27 1
UNIPROTKB|E2RFC9 - symbol:NCBP2 "Uncharacterized protein"... 309 1.3e-27 1
UNIPROTKB|P52298 - symbol:NCBP2 "Nuclear cap-binding prot... 309 1.3e-27 1
UNIPROTKB|F2Z5Q9 - symbol:NCBP2 "Uncharacterized protein"... 309 1.3e-27 1
MGI|MGI:1915342 - symbol:Ncbp2 "nuclear cap binding prote... 309 1.3e-27 1
RGD|1596188 - symbol:Ncbp2 "nuclear cap binding protein s... 309 1.3e-27 1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot... 302 7.3e-27 1
UNIPROTKB|F1NIR6 - symbol:NCBP2 "Nuclear cap-binding prot... 299 1.5e-26 1
UNIPROTKB|A2SW84 - symbol:ncbp2 "Nuclear cap-binding prot... 299 1.5e-26 1
UNIPROTKB|E2RBE5 - symbol:NCBP2L "Uncharacterized protein... 298 1.9e-26 1
UNIPROTKB|Q6DES0 - symbol:ncbp2 "Nuclear cap-binding prot... 298 1.9e-26 1
WB|WBGene00009141 - symbol:ncbp-2 species:6239 "Caenorhab... 282 9.7e-25 1
UNIPROTKB|F1RXK2 - symbol:NCBP2L "Uncharacterized protein... 268 2.9e-23 1
TAIR|locus:2167649 - symbol:CBP20 "CAP-binding protein 20... 267 3.8e-23 1
UNIPROTKB|A6PVI3 - symbol:NCBP2L "Nuclear cap-binding pro... 253 1.1e-21 1
UNIPROTKB|I3LIU9 - symbol:LOC100621482 "Uncharacterized p... 252 1.5e-21 1
UNIPROTKB|G4N872 - symbol:MGG_06296 "Nuclear cap-binding ... 239 3.5e-20 1
DICTYBASE|DDB_G0287197 - symbol:ncbp2 "nuclear cap-bindin... 229 4.0e-19 1
SGD|S000006099 - symbol:CBC2 "Small subunit of the hetero... 221 2.8e-18 1
POMBASE|SPBC13A2.01c - symbol:SPBC13A2.01c "nuclear cap-b... 218 5.8e-18 1
CGD|CAL0001895 - symbol:orf19.763 species:5476 "Candida a... 209 5.3e-17 1
GENEDB_PFALCIPARUM|PFD0750w - symbol:PFD0750w "nuclear ca... 182 3.8e-14 1
UNIPROTKB|Q8I1T2 - symbol:PFD0750w "Nuclear cap-binding p... 182 3.8e-14 1
ASPGD|ASPL0000003062 - symbol:AN6142 species:162425 "Emer... 154 3.5e-11 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 109 2.1e-06 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 108 2.6e-06 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 108 2.6e-06 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 111 5.5e-06 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 105 7.3e-06 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 107 7.3e-06 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 108 1.0e-05 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 102 1.1e-05 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 108 1.2e-05 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 108 1.2e-05 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 108 1.3e-05 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 108 1.3e-05 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 108 1.3e-05 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 108 1.3e-05 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 104 1.4e-05 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 107 1.5e-05 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 107 1.5e-05 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 104 1.6e-05 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 106 1.7e-05 1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 100 1.9e-05 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 100 1.9e-05 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 105 2.3e-05 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 102 2.9e-05 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 100 3.2e-05 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 98 4.7e-05 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 109 5.1e-05 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 102 5.4e-05 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 102 5.4e-05 1
CGD|CAL0004922 - symbol:orf19.6766 species:5476 "Candida ... 89 6.1e-05 2
UNIPROTKB|Q5ADS5 - symbol:NOP13 "Putative uncharacterized... 89 6.1e-05 2
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 106 6.2e-05 1
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 108 6.2e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 95 6.3e-05 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 97 7.0e-05 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 100 8.6e-05 1
UNIPROTKB|E9PAR5 - symbol:NCBP2 "Nuclear cap-binding prot... 93 0.00010 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 93 0.00010 1
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 106 0.00010 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 98 0.00011 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 93 0.00012 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 98 0.00013 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 105 0.00014 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 93 0.00019 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 93 0.00019 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 96 0.00021 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 90 0.00021 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 90 0.00021 1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 99 0.00022 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 96 0.00023 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 89 0.00027 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 89 0.00027 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 93 0.00028 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 102 0.00028 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 89 0.00032 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 89 0.00032 1
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 92 0.00035 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 88 0.00035 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 88 0.00035 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 101 0.00036 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 90 0.00038 1
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 100 0.00044 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 87 0.00045 1
TAIR|locus:2177033 - symbol:AT5G12190 species:3702 "Arabi... 87 0.00045 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 96 0.00045 1
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 92 0.00047 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 91 0.00050 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 91 0.00051 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 97 0.00056 1
UNIPROTKB|E5RG67 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 87 0.00057 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 88 0.00060 1
WARNING: Descriptions of 20 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 59/74 (79%), Positives = 70/74 (94%)
Query: 8 SVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67
SVELSSYRDQHFKGSR+EQE+ LR + TLYVGNLS+YTTEEQ++ELFS+CGD++ I+MGL
Sbjct: 4 SVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGL 63
Query: 68 DKYKKTPCGFCFLE 81
DKYKKTPCGFCF+E
Sbjct: 64 DKYKKTPCGFCFVE 77
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+S YRDQHF+GSR QEK L+ +STLYVGNLS+YTTEEQ+ ELFSKCGD+KRI+MGLDK
Sbjct: 19 EISQYRDQHFRGSRQLQEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
Query: 70 YKKTPCGFCFLE 81
KKTPCGFCF+E
Sbjct: 79 IKKTPCGFCFVE 90
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 57/82 (69%), Positives = 72/82 (87%)
Query: 1 MTTVISPS-VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGD 59
+ + S S V++S YRDQHFKG+R EQEKLL+ ++TLYVGNLS+YTTEEQ++ELF+KCGD
Sbjct: 5 LNALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQSATLYVGNLSFYTTEEQVHELFAKCGD 64
Query: 60 IKRIIMGLDKYKKTPCGFCFLE 81
+KRII+GLDK KKT CGFCF+E
Sbjct: 65 VKRIIIGLDKIKKTACGFCFVE 86
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 55/72 (76%), Positives = 65/72 (90%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+S YRDQHF+GS+ QEK L+ +STLYVGNLS+YTTEEQ+ ELFSKCGD+KRI+MGLDK
Sbjct: 19 EISRYRDQHFRGSKKLQEKFLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
Query: 70 YKKTPCGFCFLE 81
KKTPCGFCF+E
Sbjct: 79 IKKTPCGFCFVE 90
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 58/82 (70%), Positives = 70/82 (85%)
Query: 1 MTTVISPS-VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGD 59
+ + S S V++S YRDQHFKG+R EQEKLL+ +TLYVGNLS+YTTEEQ+YELFSK GD
Sbjct: 5 LNALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQANTLYVGNLSFYTTEEQVYELFSKSGD 64
Query: 60 IKRIIMGLDKYKKTPCGFCFLE 81
+KRII+GLDK KKT CGFCF+E
Sbjct: 65 VKRIIIGLDKVKKTACGFCFVE 86
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 56/73 (76%), Positives = 67/73 (91%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
V++S YRDQHFKG+R EQEKLL+ ++TLYVGNLS+YTTEEQ+YELFSK GD+KRII+GLD
Sbjct: 14 VDVSQYRDQHFKGNRYEQEKLLKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLD 73
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 74 KVKKTACGFCFVE 86
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLD
Sbjct: 15 VELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 75 KMKKTACGFCFVE 87
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
V+LS YRDQHF+G+R++QE LL+ + TLYVGNLS+YTTEEQ++ELFSK GD+KRI+MGLD
Sbjct: 12 VDLSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLD 71
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 72 KVKKTACGFCFVE 84
>UNIPROTKB|F1NIR6 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
IPI:IPI00597191 ProteinModelPortal:F1NIR6
Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
Length = 158
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 54/73 (73%), Positives = 65/73 (89%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
V+LS YRDQHF+G+R +QE+LLR + TLYVGNLS+YTTEEQ++ELF K GDIK+IIMGLD
Sbjct: 17 VDLSQYRDQHFRGTRYDQERLLRKSCTLYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLD 76
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 77 KVKKTACGFCFVE 89
>UNIPROTKB|A2SW84 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
SMR:A2SW84 Uniprot:A2SW84
Length = 165
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
+++S YRDQHFKG+R +QEKLL+ + TLYVGNLS+YTTEEQ++ELFSK GD+KRII+GLD
Sbjct: 14 IDVSQYRDQHFKGNRYDQEKLLKQSHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLD 73
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 74 KVKKTACGFCFVE 86
>UNIPROTKB|E2RBE5 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
Length = 163
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 53/74 (71%), Positives = 63/74 (85%)
Query: 8 SVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67
S+ELS Y+DQ F G EQEKLL+ +STLYVGNLS+YTTEEQ+YELFS+CGD+K + MGL
Sbjct: 15 SLELSEYQDQQFGGDNDEQEKLLKDSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGL 74
Query: 68 DKYKKTPCGFCFLE 81
DK KKT CGFCF+E
Sbjct: 75 DKIKKTACGFCFIE 88
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 53/73 (72%), Positives = 66/73 (90%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G+R++QE LL+ + TLYVGNLS+YTTEEQ++ELFSK GD+K+I+MGLD
Sbjct: 12 VELSQYRDQHFRGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLD 71
Query: 69 KYKKTPCGFCFLE 81
K KKT CGFCF+E
Sbjct: 72 KIKKTACGFCFVE 84
>WB|WBGene00009141 [details] [associations]
symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
Length = 158
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 49/79 (62%), Positives = 67/79 (84%)
Query: 3 TVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR 62
T+ +P E+S+YRDQ ++G+ +QE LRT+ TLYVGNLSYYT E+Q+YELF + GD++R
Sbjct: 7 TLDNPK-EISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRR 65
Query: 63 IIMGLDKYKKTPCGFCFLE 81
+IMGLD++KKTPCGFCF+E
Sbjct: 66 VIMGLDRFKKTPCGFCFVE 84
>UNIPROTKB|F1RXK2 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:FP245415 ProteinModelPortal:F1RXK2 Ensembl:ENSSSCT00000013736
Uniprot:F1RXK2
Length = 156
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
ELS Y+DQ F+G E EKLL +STLYV NLS YTTEEQ++ELFS+CGD+K + MGLD
Sbjct: 15 ELSEYQDQQFRGDNEEHEKLLMESSTLYVENLSIYTTEEQIFELFSRCGDVKNVFMGLDN 74
Query: 70 YKKTPCGFCFLE 81
KKT CGFCF+E
Sbjct: 75 IKKTACGFCFVE 86
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 46/80 (57%), Positives = 65/80 (81%)
Query: 1 MTTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDI 60
M ++ +LS+YRD+ F G++ E ++ LR ++T+Y+GN+S+YTTEEQLYELFS+ G+I
Sbjct: 1 MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60
Query: 61 KRIIMGLDKYKKTPCGFCFL 80
K+IIMGLDK KTPCGFCF+
Sbjct: 61 KKIIMGLDKNTKTPCGFCFV 80
>UNIPROTKB|A6PVI3 [details] [associations]
symbol:NCBP2L "Nuclear cap-binding protein subunit 2-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AL109946
IPI:IPI00398274 ProteinModelPortal:A6PVI3 SMR:A6PVI3 PRIDE:A6PVI3
Ensembl:ENST00000372379 GeneCards:GC0XP107037 HGNC:HGNC:31795
HPA:HPA010664 neXtProt:NX_A6PVI3 HOGENOM:HOG000217589
HOVERGEN:HBG052581 InParanoid:A6PVI3 OMA:GFREGQQ OrthoDB:EOG470TJG
Genevestigator:A6PVI3 PANTHER:PTHR18847 Uniprot:A6PVI3
Length = 153
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 47/75 (62%), Positives = 61/75 (81%)
Query: 7 PSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMG 66
P++ELS YRD F G + +QEKLL+ +STL +GNLS+YTTEE+++ELFS+ DI+ I MG
Sbjct: 12 PALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELFSR-SDIRNIFMG 70
Query: 67 LDKYKKTPCGFCFLE 81
LDK KKT CGFCF+E
Sbjct: 71 LDKIKKTACGFCFVE 85
>UNIPROTKB|I3LIU9 [details] [associations]
symbol:LOC100621482 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
Length = 148
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 50/73 (68%), Positives = 57/73 (78%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD 68
VELS YRDQHF+G EQEKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIM
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMA-- 72
Query: 69 KYKKTPCGFCFLE 81
CGFCF+E
Sbjct: 73 ------CGFCFVE 79
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 41/56 (73%), Positives = 51/56 (91%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
QE L ++TLYVGNLS+YTTEEQ+YELFSKCG+IKR++MGLD++ KTPCGFCF+E
Sbjct: 40 QEDPLANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVE 95
>DICTYBASE|DDB_G0287197 [details] [associations]
symbol:ncbp2 "nuclear cap-binding protein subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000339 "RNA cap binding"
evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
Length = 234
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 43/68 (63%), Positives = 55/68 (80%)
Query: 14 YRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT 73
Y D+ ++ E + + +ST+YVG LS+YTTEEQLYELFSKCG+IKRIIMGLD+ +KT
Sbjct: 12 YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKT 71
Query: 74 PCGFCFLE 81
PCGFCF+E
Sbjct: 72 PCGFCFVE 79
>SGD|S000006099 [details] [associations]
symbol:CBC2 "Small subunit of the heterodimeric cap binding
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
Uniprot:Q08920
Length = 208
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 38/48 (79%), Positives = 46/48 (95%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
+ST+YVGNLS+YT+EEQ+YELFSKCG IKRIIMGLD++K TPCGFCF+
Sbjct: 45 SSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFI 92
>POMBASE|SPBC13A2.01c [details] [associations]
symbol:SPBC13A2.01c "nuclear cap-binding complex small
subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000243 "commitment complex" evidence=ISO] [GO:0000339 "RNA cap
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005819 "spindle" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC13A2.01c
GO:GO:0005829 GO:GO:0048471 GO:GO:0005819 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0051028 GO:GO:0000243 eggNOG:COG0724 GO:GO:0045292
GO:GO:0000339 HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846
HSSP:P52298 KO:K12883 RefSeq:NP_596414.1 ProteinModelPortal:Q9P383
SMR:Q9P383 STRING:Q9P383 EnsemblFungi:SPBC13A2.01c.1 GeneID:2539791
KEGG:spo:SPBC13A2.01c OMA:EIRRIIM OrthoDB:EOG4W11PG
NextBio:20800940 Uniprot:Q9P383
Length = 182
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 11 LSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY 70
+S Y + FK + + + ++ +YVGNLS+YTTEEQ+Y LFSKCG+I+RIIMG+D++
Sbjct: 10 VSPYLIRRFKNDLRALDAV-KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF 68
Query: 71 KKTPCGFCFLE 81
KTPCGFCF+E
Sbjct: 69 TKTPCGFCFVE 79
>CGD|CAL0001895 [details] [associations]
symbol:orf19.763 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0005846 "nuclear
cap binding complex" evidence=IEA] [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0001895 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000123 EMBL:AACQ01000122
PANTHER:PTHR18847 KO:K12883 RefSeq:XP_713573.1 RefSeq:XP_713608.1
ProteinModelPortal:Q59VH0 SMR:Q59VH0 STRING:Q59VH0 GeneID:3644742
GeneID:3644772 KEGG:cal:CaO19.763 KEGG:cal:CaO19.8383
Uniprot:Q59VH0
Length = 224
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 12 SSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYK 71
S+Y + + + E E+ + T+ T+YVGNLS++TTEEQ++ELFSKCG I RIIMGLD+ K
Sbjct: 19 SAYLIRKARHNYGELERAM-TSKTVYVGNLSHFTTEEQIHELFSKCGAIDRIIMGLDRNK 77
Query: 72 KTPCGFCFL 80
TPCGFCF+
Sbjct: 78 LTPCGFCFV 86
>GENEDB_PFALCIPARUM|PFD0750w [details] [associations]
symbol:PFD0750w "nuclear cap-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005846 "nuclear
cap binding complex" evidence=ISS] [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL844503 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298
KO:K12883 RefSeq:XP_001351463.1 ProteinModelPortal:Q8I1T2
PRIDE:Q8I1T2 EnsemblProtists:PFD0750w:mRNA GeneID:812555
KEGG:pfa:PFD0750w EuPathDB:PlasmoDB:PF3D7_0415500
ProtClustDB:CLSZ2433273 Uniprot:Q8I1T2
Length = 234
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 14 YRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT 73
Y D+ E + +R + T+Y+GNLS YTT++Q+YE SK GD++ IIMGL + +K+
Sbjct: 14 YFDRALCNDYEEWQDKIRESKTVYIGNLSIYTTQQQIYEHMSKAGDVENIIMGLHRTEKS 73
Query: 74 PCGFCFL 80
PCGFCF+
Sbjct: 74 PCGFCFV 80
>UNIPROTKB|Q8I1T2 [details] [associations]
symbol:PFD0750w "Nuclear cap-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000339 "RNA cap
binding" evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL844503 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298
KO:K12883 RefSeq:XP_001351463.1 ProteinModelPortal:Q8I1T2
PRIDE:Q8I1T2 EnsemblProtists:PFD0750w:mRNA GeneID:812555
KEGG:pfa:PFD0750w EuPathDB:PlasmoDB:PF3D7_0415500
ProtClustDB:CLSZ2433273 Uniprot:Q8I1T2
Length = 234
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 14 YRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT 73
Y D+ E + +R + T+Y+GNLS YTT++Q+YE SK GD++ IIMGL + +K+
Sbjct: 14 YFDRALCNDYEEWQDKIRESKTVYIGNLSIYTTQQQIYEHMSKAGDVENIIMGLHRTEKS 73
Query: 74 PCGFCFL 80
PCGFCF+
Sbjct: 74 PCGFCFV 80
>ASPGD|ASPL0000003062 [details] [associations]
symbol:AN6142 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 HOGENOM:HOG000217589
PANTHER:PTHR18847 OMA:YRTDYDV ProteinModelPortal:C8V2B3
EnsemblFungi:CADANIAT00006868 Uniprot:C8V2B3
Length = 185
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 11 LSSYRDQHFKGSRAEQEKL----LRTTSTLYVGNLSYYTTEEQLYE------LFSK--CG 58
LS + + + +E++K LR +TLYVGNLS ++ + + L ++ CG
Sbjct: 21 LSKNKRRKYSSDESEEQKDPMEGLRDATTLYVGNLSTSSSPSSVSQPHNPDLLLTRFRCG 80
Query: 59 DIKRIIMGLDKYKKTPCGFCFLE 81
+IKR++MGLD+Y KTPCGFCF+E
Sbjct: 81 EIKRLVMGLDRYNKTPCGFCFVE 103
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 16 DQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPC 75
D + R ++E + ++YVGN+ Y T E+L F+ CG + R+ + DK+ P
Sbjct: 39 DNETEALRNDKESI--DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPK 96
Query: 76 GFCFLE 81
GF ++E
Sbjct: 97 GFAYIE 102
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 36 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 91
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 36 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 91
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DKY P GF ++E
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIE 210
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 105 (42.0 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+ + DQ + + ++E + +++VGN+ Y + E++ F CG I R+ + LDK
Sbjct: 46 EMQATLDQQSESLKEDKEDI--DARSIFVGNVDYGASPEEIQAHFQSCGSINRVTILLDK 103
Query: 70 YKKTPCGFCFLE 81
+ P G+ ++E
Sbjct: 104 FTGQPKGYAYVE 115
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 107 (42.7 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
AE++K + S +YVGN+ Y +T + L FS CG I RI + DK+ P G+ ++E
Sbjct: 84 AEEKKEIDKRS-VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 140
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 108 (43.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 133 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 188
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
A+QE++ ++YVGN+ Y +T EQL E F G I+R+ + D++ P G+ ++E
Sbjct: 20 AKQEEI--DGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIE 75
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 215
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 215
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 219
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 104 (41.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK ++YVGN+ Y T E++ + F CG + R+ + D++ P GF ++E
Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVE 125
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIE 209
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIE 210
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
AE++K + S +YVGN+ Y T + L FS CG I RI + DK+ P G+ ++E
Sbjct: 84 AEEKKEIDKRS-VYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 140
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 106 (42.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
S +EK+ ++YVGN+ Y + E+L FS+CG++ R+ + DK+ P G+ ++E
Sbjct: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
S +E E+ TT TLYVGNL Y E + ELF++ G++ + + DK GF F+
Sbjct: 52 SSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
S +E E+ TT TLYVGNL Y E + ELF++ G++ + + DK GF F+
Sbjct: 52 SSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 105 (42.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK+ ++YVGN+ Y T E+L F CG + R+ + DK+ P GF ++E
Sbjct: 90 EEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIE 145
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 102 (41.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+QE++ + ++YVGN+ Y +T +Q+ F CG + RI + DK P G C++E
Sbjct: 94 DQEEI--DSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVE 148
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 100 (40.3 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+++VGN+ Y + E++ F CG I R+ + LDK+ P GF ++E
Sbjct: 74 SIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVE 120
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 98 (39.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 23 RAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
R + K+ ++YVGN+ Y T E+L F+ CG I R+ + DK+ P G+ ++E
Sbjct: 41 RMTEGKVEADQRSIYVGNVDYGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIE 99
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 109 (43.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 2 TTVISPSVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIK 61
TT +P S++ + G E+E L + L+V NL Y +TEE L +LFSK G +
Sbjct: 372 TTKGAPKNTTKSWQGR-ILGENEEEEDLAES-GRLFVRNLPYTSTEEDLEKLFSKYGPLS 429
Query: 62 RIIMGLDKYKKTPCGFCFL 80
+ +D K P GF F+
Sbjct: 430 ELHYPIDSLTKKPKGFAFI 448
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 102 (41.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 11 LSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY 70
LS ++ F S EK+ ++YVGN+ Y T +L F+ CG+I R+ + DK+
Sbjct: 140 LSPEKEAGFP-SDTPTEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKF 198
Query: 71 KKTPCGFCFLE 81
P G+ ++E
Sbjct: 199 SGHPKGYAYIE 209
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 102 (41.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 11 LSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY 70
LS ++ F S EK+ ++YVGN+ Y T +L F+ CG+I R+ + DK+
Sbjct: 140 LSPEKEAGFP-SDTPTEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKF 198
Query: 71 KKTPCGFCFLE 81
P G+ ++E
Sbjct: 199 SGHPKGYAYIE 209
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 89 (36.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT-PC-GFCFLE 81
L+VGNLS+ TTE+ L E F CG+I +I M ++ T C GF F++
Sbjct: 217 LFVGNLSFDTTEDLLEEHFRHCGEIVKIRMAT--FQDTGKCKGFAFID 262
Score = 34 (17.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLR 31
++ + LS + + K + + EKL R
Sbjct: 42 LNAQIPLSKKQQRQLKKGKLDLEKLAR 68
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 89 (36.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT-PC-GFCFLE 81
L+VGNLS+ TTE+ L E F CG+I +I M ++ T C GF F++
Sbjct: 217 LFVGNLSFDTTEDLLEEHFRHCGEIVKIRMAT--FQDTGKCKGFAFID 262
Score = 34 (17.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 5 ISPSVELSSYRDQHFKGSRAEQEKLLR 31
++ + LS + + K + + EKL R
Sbjct: 42 LNAQIPLSKKQQRQLKKGKLDLEKLAR 68
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 106 (42.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L+V NL + +TEE L ++FSK G + I +D+ K P GF F+
Sbjct: 69 EEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFI 124
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ + + L++ N+ Y TEE L ELFSK G + ++ +D K P GF F+
Sbjct: 390 EEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFV 445
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++YVGN + TTEE+L FS G I + + D+ P GF F+E
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIE 52
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 97 (39.2 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+E++ ++YVGN+ Y T ++L F+ CG + R+ + +++ P GF ++E
Sbjct: 58 EERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIE 113
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 100 (40.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
EK ++YVGN+ Y T ++L F+ CG+I R+ + DK+ P G+ ++E
Sbjct: 152 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIE 206
>UNIPROTKB|E9PAR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR027157 GO:GO:0005634
PANTHER:PTHR18847 KO:K12883 CTD:22916 RefSeq:NP_001036005.1
UniGene:Hs.591671 DNASU:22916 GeneID:22916 KEGG:hsa:22916
HGNC:HGNC:7659 ChiTaRS:NCBP2 GenomeRNAi:22916 NextBio:43603
EMBL:AC011322 IPI:IPI00784189 ProteinModelPortal:E9PAR5 SMR:E9PAR5
PRIDE:E9PAR5 Ensembl:ENST00000427641 UCSC:uc003fxe.1
ArrayExpress:E9PAR5 Bgee:E9PAR5 Uniprot:E9PAR5
Length = 103
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQL 50
VELS YRDQHF+G EQEKLL+ + Y N Y +L
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKS---YAENAMRYINGTRL 53
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
S L++G LS+ TTE+ L E FSKCG + + +D+ GF F+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFV 80
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L+V NL + +TEE L ++FSK G + I +D+ K P GF F+
Sbjct: 393 EEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFI 448
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 8 SVELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGL 67
S+E + Q +L + +++VGN++ T EQ+ + F CG IKRI +
Sbjct: 38 SIEGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLY 97
Query: 68 DKYKKTPCGFCFLE 81
D+ TP G+ ++E
Sbjct: 98 DRNTGTPKGYGYIE 111
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 93 (37.8 bits), Expect = 0.00012, P = 0.00012
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L+VG L++ TTEE L ++FSK G + +++ D+ K GF F+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFV 52
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
SR +E + +++VGN+ Y + +L FS CG+I R+ + DK+ P G+ ++E
Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIE 190
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L++ NL Y +TEE L LFSK G + + +D K P GF F+
Sbjct: 396 EEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFV 451
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 93 (37.8 bits), Expect = 0.00019, P = 0.00019
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++EK ++Y+GN+ Y +T +L + FS G + R+ + +K+ P GF +LE
Sbjct: 54 DEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLE 110
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 93 (37.8 bits), Expect = 0.00019, P = 0.00019
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++EK ++Y+GN+ Y +T +L + FS G + R+ + +K+ P GF +LE
Sbjct: 54 DEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLE 110
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 96 (38.9 bits), Expect = 0.00021, P = 0.00021
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
A +E + ++YVGN+ Y + +L FS CG+I R+ + DK+ P G+ ++E
Sbjct: 129 APKENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIE 186
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++YVGN + TTE+ L FS+ G++ + + D+ P GF F+E
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++YVGN + TTE+ L FS+ G++ + + D+ P GF F+E
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 23 RAEQEKLL-RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+A+++ ++ ++ +++VGN+ Y TEE+L E+FS+ G + + + D+ P GF F E
Sbjct: 4 KAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCE 63
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 96 (38.9 bits), Expect = 0.00023, P = 0.00023
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 24 AEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
A +E + ++YVGN+ Y + +L FS CG+I R+ + DK+ P G+ ++E
Sbjct: 144 APKENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIE 201
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
+STL+V +S+ +TEE L + FS+ G + ++ + +DK + P GF ++
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
R ++ L+V LS YTT++ L +LFS G IK + D + P GF F+
Sbjct: 4 RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFI 53
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 93 (37.8 bits), Expect = 0.00028, P = 0.00028
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 10 ELSSYRDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDK 69
E+ + +D + E ++ + S +YVGN+ Y T E++ F CG + R+ + +DK
Sbjct: 66 EMGATQDPASMAANQEGKEEVDARS-VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
Query: 70 YKKTPCGFCFLE 81
+ + P GF ++E
Sbjct: 125 FGQ-PKGFAYVE 135
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L+V NL Y ++EE L +LFSK G + + +D K P GF F+
Sbjct: 394 EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFV 449
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 89 (36.4 bits), Expect = 0.00032, P = 0.00032
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TLYVGNL Y E + ELFS+ G + + + DK+ GF F+E
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 89 (36.4 bits), Expect = 0.00032, P = 0.00032
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TLYVGNL Y E + ELFS+ G + + + DK+ GF F+E
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 92 (37.4 bits), Expect = 0.00035, P = 0.00035
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+T+YVGN+ T+EQLYELF + + RI DK + G+ F+E
Sbjct: 9 NTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIE 56
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T L+VG + E+ LY++FS GDI+ I + L+ K GF F+E
Sbjct: 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVE 55
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T L+VG + E+ LY++FS GDI+ I + L+ K GF F+E
Sbjct: 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVE 55
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 101 (40.6 bits), Expect = 0.00036, P = 0.00036
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L+V NLSY ++EE L +LFS G + + +D K P GF F+
Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 446
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 90 (36.7 bits), Expect = 0.00038, P = 0.00038
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
LYV LS+ TTE+ L + F + G++ + M +DK P GF FL
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 100 (40.3 bits), Expect = 0.00044, P = 0.00044
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
E+E+ L + L+V NL Y ++EE L +LFS+ G + + +D K P GF F+
Sbjct: 354 EEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFV 409
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TLYVGNLS TE + +LFS+ G K M +D P +CF+E
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVE 52
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKK 72
LYV NL + T E++Y++F K G I++I +G DK K
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATK 57
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 96 (38.9 bits), Expect = 0.00045, P = 0.00045
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIK--RIIMGLDKYKKTPCGFCF 79
T++VG+L Y TEEQL E+FS CG+I R + DK K CF
Sbjct: 261 TIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCF 307
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TL+V L+ TTEE+L E+FS+ GDI++I + D G+ F+E
Sbjct: 57 TLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIE 103
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 91 (37.1 bits), Expect = 0.00050, P = 0.00050
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK T ++YVGN+ Y + E+L F CG I R+ + +K P GF ++E
Sbjct: 88 EEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIE 143
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 91 (37.1 bits), Expect = 0.00051, P = 0.00051
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+EK T ++YVGN+ Y + E+L F CG I R+ + +K P GF ++E
Sbjct: 88 EEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIE 143
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 97 (39.2 bits), Expect = 0.00056, P = 0.00056
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 15 RDQHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRI-IMGLDKYKKT 73
R+Q FK + E++K++ S +YV N++ TEE+L + FS+CG I +M +K K
Sbjct: 287 REQ-FK-EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK 344
Query: 74 PCGF-CF 79
GF CF
Sbjct: 345 GFGFVCF 351
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 87 (35.7 bits), Expect = 0.00057, P = 0.00057
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TLYVGNLS TE + +LFS+ G K M +D P +CF+E
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVE 52
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 88 (36.0 bits), Expect = 0.00060, P = 0.00060
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
EQEK ++YVGN+ + +T ++ E F+ CG + R+ + DK+ F F+E
Sbjct: 39 EQEKT--DARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVE 93
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 86 (35.3 bits), Expect = 0.00063, P = 0.00063
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++A+ E+ + T TLYVGNL Y E ++ LF + G + + + D+ GF F+E
Sbjct: 52 AQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVE 111
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 86 (35.3 bits), Expect = 0.00063, P = 0.00063
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 22 SRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++A+ E+ + T TLYVGNL Y E ++ LF + G + + + D+ GF F+E
Sbjct: 52 AQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVE 111
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 87 (35.7 bits), Expect = 0.00064, P = 0.00064
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L++G L++ T EE L ++FSK G I +++ D+ K GF F+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFV 51
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 29 LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L + ST+YV NL + T LY +FSK G + ++ + DK + G F+
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 56
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 88 (36.0 bits), Expect = 0.00081, P = 0.00081
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
E++K + S +++GN+ + +T E++ E F CG I R + DK+ K F ++E
Sbjct: 53 EEQKAIDAKS-VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIE 108
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 89 (36.4 bits), Expect = 0.00081, P = 0.00081
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+++VGN+ Y T E++ + F CG + R+ + DK+ + P GF ++E
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQ-PKGFAYVE 138
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 97 (39.2 bits), Expect = 0.00082, P = 0.00082
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 17 QHFKGSRAEQEK---LLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKT 73
Q + + +EQE+ L+ T L++ NL+Y E+ L LF G ++++ M +DK
Sbjct: 303 QKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN 362
Query: 74 PCGFCFLE 81
P GF +++
Sbjct: 363 PKGFAYID 370
>UNIPROTKB|J9NZ89 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:AAEX03000805 ProteinModelPortal:J9NZ89
Ensembl:ENSCAFT00000045168 Uniprot:J9NZ89
Length = 166
Score = 86 (35.3 bits), Expect = 0.00084, P = 0.00083
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TL+V ++Y TTE +L F G IKRI M K P G+ F+E
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150
>DICTYBASE|DDB_G0293924 [details] [associations]
symbol:DDB_G0293924 "RNA-binding protein 7"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0293924 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000224
RefSeq:XP_628876.1 ProteinModelPortal:Q54B40
EnsemblProtists:DDB0192199 GeneID:8629492 KEGG:ddi:DDB_G0293924
eggNOG:NOG247261 InParanoid:Q54B40 OMA:LERCEIP Uniprot:Q54B40
Length = 886
Score = 97 (39.2 bits), Expect = 0.00088, P = 0.00088
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
RT+ST+YV N+ + T ++ +FSK G ++R + +K+ KT GF F+E
Sbjct: 13 RTSSTIYVSNIRHSTPINSIFNIFSKFGPLERCEIPENKFGKTR-GFAFIE 62
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 90 (36.7 bits), Expect = 0.00088, P = 0.00088
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++LY GN+ TE +YELF + G +K I M D+ KT G+ F+E
Sbjct: 17 ASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVE 64
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 85 (35.0 bits), Expect = 0.00091, P = 0.00091
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 RAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
RA+ K ++VG LS T EE++ E F G+++ I + +D GFCF+
Sbjct: 23 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 80
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
TL+VGNL TEE L+ELF + G + ++ + DK K P F F+
Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFV 55
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L+VG LS+ T E+ L ++FSK G I +++ D+ + GF F+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L+VG LS+ T E+ L ++FSK G I +++ D+ + GF F+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L+VG LS+ T E+ L ++FSK G I +++ D+ + GF F+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
L+VG LS+ T E+ L ++FSK G I +++ D+ + GF F+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 52
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++YVGN+ Y TEE++ F+ G + + + D+ P GF F+E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVE 53
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 84 (34.6 bits), Expect = 0.00094, P = 0.00094
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
TL+VGNL TEE L+ELF + G + ++ + DK K P F F+
Sbjct: 8 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFV 52
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 84 (34.6 bits), Expect = 0.00097, P = 0.00097
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
TL+VGNL TEE L+ELF + G + ++ + DK K P F F+
Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFV 55
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 87 (35.7 bits), Expect = 0.00097, P = 0.00097
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 25 EQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
E++K + S +++GN+ + +T E++ E F CG I + + DK+ K F ++E
Sbjct: 47 EEQKAIDAKS-VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIE 102
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 81 0.00091 102 3 11 22 0.41 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 120
No. of states in DFA: 512 (54 KB)
Total size of DFA: 96 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.18u 0.11s 10.29t Elapsed: 00:00:00
Total cpu time: 10.19u 0.11s 10.30t Elapsed: 00:00:00
Start: Thu Aug 15 14:23:45 2013 End: Thu Aug 15 14:23:45 2013
WARNINGS ISSUED: 1