RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy518
(81 letters)
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 62.3 bits (151), Expect = 3e-15
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
EKLL+ + TLYVGNLS+YTTEEQ+YELFSK GDIK+IIMGLDK KKT CGFCF+E
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 55
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 55.7 bits (134), Expect = 1e-12
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLD-KYKKTPCGFCFLE 81
+TTS + V N+ + + ++ ELFS G++K + + GF F++
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 57
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.4 bits (133), Expect = 2e-12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++ ++ TS L V L + TTE+ L E FS G++ + + D GF F+
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVR 56
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 53.8 bits (129), Expect = 4e-12
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+LYVG+L TE LYE FS G I I + D + G+ ++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN 48
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.9 bits (129), Expect = 5e-12
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ LYV L T+++L +LFS+ G I + +D+ G F+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 54
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 53.8 bits (129), Expect = 5e-12
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ LYV NL T++QL +F K G I + + DK P G F+
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 54
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.0 bits (124), Expect = 2e-11
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
G+RA + L V LS YTTE L E+FSK G I + + D+ + GF F+
Sbjct: 1 GNRANPD----PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 56
Query: 81 E 81
Sbjct: 57 Y 57
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 51.1 bits (122), Expect = 4e-11
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+++G LS+ TT+E L E F + G++K ++ D K GF F+
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 48
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 53.5 bits (127), Expect = 4e-11
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L++G LS+ TT+E L F + G + ++ D K GF F+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 54
Score = 41.9 bits (97), Expect = 8e-07
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T ++VG + T E L + F + G I+ I + D+ GF F+
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 145
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.6 bits (123), Expect = 6e-11
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
R T++ L+ L + FS G ++ + + D+ + G ++E
Sbjct: 16 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 66
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.3 bits (120), Expect = 1e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++VG LS T EE++ E F G+++ I + +D GFCF+
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 47
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 50.4 bits (120), Expect = 1e-10
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
G +E+ + +T+YVG L +E L+ELF + G + M D+ G+ F+
Sbjct: 1 GPISERNQ----DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 56
Query: 81 E 81
E
Sbjct: 57 E 57
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 49.9 bits (119), Expect = 2e-10
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 32 TTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
S +++GNL+ + + +FSK G I GF F++
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGC--------SVHKGFAFVQ 56
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 49.6 bits (118), Expect = 2e-10
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ + L V L T+ +LY LF G I + D G+ F++
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVD 50
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 49.7 bits (118), Expect = 2e-10
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
+YVGNL + + ++F K G I+ I + + F
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEF 60
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.8 bits (116), Expect = 3e-10
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+++G LS+ TT++ L + FSK G++ + LD GF F+
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 47
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 3e-10
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFC 78
TLYVGNLS TE + +LFS+ G K M + P F
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFV 53
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 49.3 bits (117), Expect = 4e-10
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L++G LS+ TTEE L + + G + ++ D K GF F+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 49.6 bits (118), Expect = 5e-10
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
LY+ NL Y T E++Y++F K G I++I +G + G ++
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVV 52
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.7 bits (113), Expect = 1e-09
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+T+ V NLS T E L ELF G I RI + DK GF F+
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFIS 56
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 47.8 bits (113), Expect = 1e-09
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T L+V N+ + + L ++F + G I + + ++ GF E
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 59
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 47.7 bits (113), Expect = 1e-09
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T LYVG L+ ++ L+ F GDI I + LD + GF F+E
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVE 53
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.4 bits (112), Expect = 2e-09
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRII-----MGLDKYKKTPCGFCFLE 81
LYVGN+ + TEE + + F+ + + L F FLE
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLE 54
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 47.3 bits (112), Expect = 2e-09
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L++G LS+ TT+E L F + G + ++ D K GF F+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 54
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 47.0 bits (111), Expect = 3e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T + ++VG L Y+TT+ L + F GDI+ ++ D+ G+ F+
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 58
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 46.5 bits (110), Expect = 5e-09
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
T+Y G ++ T++ + + FS G I I +
Sbjct: 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV 50
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 45.9 bits (108), Expect = 6e-09
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T ++VG + T E L + F + G I+ I + D+ GF F+
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 50
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 45.9 bits (108), Expect = 6e-09
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDI-KRIIMGLDKYKKTPCGFCFLE 81
+++GNL E+ LY+ FS G I + + D G+ F+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 47
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 45.4 bits (107), Expect = 1e-08
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
L++ NL++ TTEE L +FSK G IK +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTI 30
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 45.2 bits (106), Expect = 1e-08
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
TL++ N T+ + +L + I T F +++
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYID 49
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.0 bits (106), Expect = 1e-08
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+S ++VG + TE++L E FS+ GD+ + K F F+
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVT 48
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 45.0 bits (106), Expect = 1e-08
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 26 QEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
K +R TL NLS+ TE++L E+F +I+ + F
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 64
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 44.7 bits (105), Expect = 2e-08
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ + V N+ + + +++ + F I + K P G +
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 57
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.1 bits (106), Expect = 2e-08
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
GSR + T ++GNL Y TEE + E F + + GF +
Sbjct: 7 GSRLPKSP----PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 81 E 81
E
Sbjct: 63 E 63
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 44.7 bits (105), Expect = 2e-08
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPC--GFCFLE 81
L++G + E++ E +K + ++ GF F+E
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVE 51
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 44.2 bits (104), Expect = 3e-08
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L V NL + ++ + ELF++ G +K+ + G +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDRSGRSLGTADVH 47
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 43.9 bits (103), Expect = 3e-08
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++VG LS TT E + F + G + ++ DK GF F+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 47
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 44.3 bits (104), Expect = 3e-08
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+++ NL + LY+ FS G+I + D+ GF E
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 56
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 43.6 bits (102), Expect = 6e-08
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L+V ++ E+++ E F G+IK I + LD+ G+ +E
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 55
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 43.9 bits (103), Expect = 6e-08
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ L+V NLSY ++EE L +LFS G + + +D K P GF F+
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 56
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 43.3 bits (101), Expect = 8e-08
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T+++ NLS+ + EE L E+ + GD+K + + L + G F +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQ 56
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 42.7 bits (100), Expect = 1e-07
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKY 70
E + + LYV NL T+EE + + F+ + +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 45
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 42.5 bits (99), Expect = 1e-07
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFC 78
+T+ V NL + ++Y+ F CG I + + K
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARI 45
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 42.8 bits (100), Expect = 2e-07
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKR--------IIMGLDKYKKTPCGFCFLE 81
S +YV L+ T + L + F +CG +K I + LDK P G +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 42.3 bits (99), Expect = 2e-07
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L++G L Y ++Q+ EL + G +K + D G+ F E
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 49
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 42.7 bits (100), Expect = 2e-07
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFC 78
+ V NL Y T + L+++FSK G + +II
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF--TKNNQFQALL 50
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 42.0 bits (98), Expect = 2e-07
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ LY+GNLS T + L +LF + L G+ F++
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFVD 43
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 42.5 bits (99), Expect = 2e-07
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
LY+ NLS TE L LF++ + K + G F+
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 66
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.5 bits (97), Expect = 3e-07
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 27 EKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
EK S L+VGNL TEE++ +LF K G + +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI 40
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 41.6 bits (97), Expect = 4e-07
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
+ L++ +L ++ L ++F G++ + +DK F F+
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 65
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 41.2 bits (96), Expect = 4e-07
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ L V L T+E+ LF G+I+ + DK G+ F+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 50
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.4 bits (96), Expect = 5e-07
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++ N+ + T+ + + + + L G ++
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQ 56
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 41.3 bits (96), Expect = 6e-07
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
GS K+ + ++V L E L E K G I ++M
Sbjct: 4 GSSGSHHKV-SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM----MPFKRQALVEF 58
Query: 81 E 81
E
Sbjct: 59 E 59
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.4 bits (94), Expect = 8e-07
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
R +TLYV T L FS G+I + M F+
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVT 45
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.5 bits (94), Expect = 1e-06
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
R+ +++VGN+ Y TEEQL ++FS+ G + + D+ P G+ F E
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 56
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 40.3 bits (93), Expect = 1e-06
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
GS + T L++GNL+ + +L S+ + + +
Sbjct: 1 GSHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYV 59
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 40.0 bits (93), Expect = 1e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
T+ L+VG L T+ L F + G I+ I
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH 49
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 39.4 bits (91), Expect = 3e-06
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 35 TLYVGNLSYYTTEEQL---YELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
++V LS + ++ E F K G I ++++ G
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSA 57
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.4 bits (91), Expect = 3e-06
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 20 KGSRAEQEKLLRTTST-LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFC 78
G +A+ K T LY+ NL E++L + G + + D +
Sbjct: 4 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 63
Query: 79 F 79
Sbjct: 64 A 64
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.6 bits (89), Expect = 4e-06
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
++TL++ N+ +EE L LFS G + + + + ++
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK----FFQKDRKMALIQ 54
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 38.5 bits (89), Expect = 5e-06
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 31 RTTSTLYVGNLSYYTTEEQL----YELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
R T+Y+ NL+ +++L + +FS+ G I I++ G F+
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV---SRSLKMRGQAFVI 52
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.7 bits (89), Expect = 6e-06
Identities = 6/49 (12%), Positives = 19/49 (38%)
Query: 32 TTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
+ + L + ++E++ + FS + + ++ G F+
Sbjct: 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFV 62
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 37.1 bits (85), Expect = 2e-05
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCG 76
R+ + V L + + L + + GD+ + D
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYL 58
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 36.7 bits (84), Expect = 2e-05
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
LY+ L TT++ L +L G I LDK G+ F++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVD 46
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 36.8 bits (84), Expect = 5e-05
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L V + E QL +LF + G I+ + + D+ + G+ F++
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVK 90
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 36.3 bits (83), Expect = 5e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
+ G+L T E L+ LFS G+IK I
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDF 43
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 36.2 bits (83), Expect = 5e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 31 RTTSTLYV--GNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T +L V G L + QL + KCG + ++M P F
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM----PPNKPYSFARYR 64
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.2 bits (83), Expect = 6e-05
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 17 QHFKGSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCG 76
++ + S + L S + + EE E+ K G+++ + + D G
Sbjct: 11 RNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDNLGDHLVG 69
Query: 77 FCFLE 81
+++
Sbjct: 70 NVYVK 74
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 35.9 bits (82), Expect = 6e-05
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
++Y+ T + + E G + I M +K
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFV 52
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.9 bits (82), Expect = 6e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L+VG LS+ T E+ L ++FSK G I +++ D+ + GF F+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 53
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 35.4 bits (81), Expect = 7e-05
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 31 RTTSTLYVGNLSY-YTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T +++ + QL +L G I ++ K F +
Sbjct: 6 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI----LNKINEAFIEMA 53
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.1 bits (80), Expect = 1e-04
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
+S + V NL + +++++L +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD 37
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 35.3 bits (80), Expect = 1e-04
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 21 GSRAEQEKLLRTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFL 80
GS R+ + + NL T ++ E FS+ G + R+++ +
Sbjct: 1 GSSGSSG---RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP------EGGITAIV 51
Query: 81 E 81
E
Sbjct: 52 E 52
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.0 bits (77), Expect = 4e-04
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 31 RTTSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
T +++ L Y TE +Y FS ++ I G +E
Sbjct: 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVE 61
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 33.2 bits (75), Expect = 7e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 34 STLYVGNLS-YYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
S L V NL+ T + L+ LF GD++R+ + + K +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI---LFNKKENALVQMA 48
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 32.1 bits (72), Expect = 0.002
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
L++ NL T E L LF++ K + + + F
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRL---VPNRHDIAFVEFT 53
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 32.1 bits (72), Expect = 0.002
Identities = 6/56 (10%), Positives = 9/56 (16%), Gaps = 11/56 (19%)
Query: 31 RTTSTLYVGNL-----SYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+S L S T + LF +
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRIN 52
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 31.0 bits (69), Expect = 0.004
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPC 75
+ V L + + L + + GD+ + D
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEF 42
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 30.5 bits (68), Expect = 0.005
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 35 TLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
+ + NLS +E L + I K+ C
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 50
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 29.9 bits (66), Expect = 0.009
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIM 65
+ + L T +++++L S +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVD 30
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 28.8 bits (64), Expect = 0.023
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 34 STLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ + V + L + F++ G+I + +M + +
Sbjct: 5 TWVTVFGFPQASASYILLQ-FAQYGNILKHVMSNTG------NWMHIR 45
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.7 bits (63), Expect = 0.032
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 33 TSTLYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCFLE 81
+ L++ L TE ++ L G + I+M FLE
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILM------LKGKNQAFLE 50
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
{Helicobacter pylori [TaxId: 210]}
Length = 86
Score = 24.8 bits (54), Expect = 0.68
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 45 TTEEQLYELFSKCGDIKRIIMGL 67
+ E + E+F K + +++ L
Sbjct: 64 SNESERNEIFQKISQLDKVVQTL 86
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 25.0 bits (53), Expect = 0.94
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 31 RTTSTLYVGNLSYY-TTEEQLYELFSKCGDIKRIIM 65
+++ NL + ++ + +L G IK I+
Sbjct: 16 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL 51
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 166
Score = 24.8 bits (52), Expect = 1.4
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGFCF 79
L V + E E+F K D K I+G +
Sbjct: 16 LSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYAR 59
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Escherichia coli, PepA [TaxId:
562]}
Length = 178
Score = 24.0 bits (51), Expect = 2.2
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 9 VELSSYRDQHFKGSRAEQEKLLRT 32
+ + Y K +++E + LR
Sbjct: 133 AKETLYSFDQLKTNKSEPRRPLRK 156
>d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 159
Score = 23.6 bits (50), Expect = 3.3
Identities = 4/21 (19%), Positives = 4/21 (19%)
Query: 9 VELSSYRDQHFKGSRAEQEKL 29
L Y K R
Sbjct: 123 AVLGLYEYDDLKQKRKVVVSA 143
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 23.6 bits (50), Expect = 4.2
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 36 LYVGNLSYYTTEEQLYELFSKCGDIKRIIMGLDKYKKTPCGF 77
GN + FSK + I + +Y+ P
Sbjct: 375 TEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 416
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 99
Score = 22.4 bits (48), Expect = 7.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 48 EQLYELFSKCGDIKRIIMGL 67
LY+L + C I+ L
Sbjct: 29 AVLYDLLAHCIPANIILKEL 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,257
Number of extensions: 10499
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 94
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)