BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5180
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 26 RDLRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVI 85
+ L WYHGAIPR A+E+++ +GDFL+R+ +PG YVLS S Q HF+I V
Sbjct: 12 KPLAEQDWYHGAIPRIEAQELLKKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV-- 69
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLI 110
D +Y +FE F +P LI
Sbjct: 70 --DNMY-----RFEGTGFSNIPQLI 87
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 28 LRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQP 87
LR W+HG + R AE +++ GDFL+R+ T+ PG YVL+ + Q H ++ + P
Sbjct: 4 LRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL----VDP 59
Query: 88 DTVYERVQFQFEDDLFDTVPDLITFYV 114
+ V + +D F++V LI++++
Sbjct: 60 EGV-----VRTKDHRFESVSHLISYHM 81
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 28 LRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQP 87
LR W+HG + R AE +++ GDFL+R+ T+ PG YVL+ Q H ++ + P
Sbjct: 4 LRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL----VDP 59
Query: 88 DTVYERVQFQFEDDLFDTVPDLITFYV 114
+ V + +D F++V LI++++
Sbjct: 60 EGV-----VRTKDHRFESVSHLISYHM 81
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
AWY G + R A+ ++ + G FL+RD ++ PG+YVLS ++ H++IN + P+
Sbjct: 20 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSL---PNR 76
Query: 90 VYERVQFQFEDDLFDTVPDLITFYVVIQPDTV 121
+F+ D FD +P L+ FY + DT
Sbjct: 77 -----RFKIGDQEFDHLPALLEFYKIHYLDTT 103
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
AWY G + R A+ ++ + G FL+RD ++ PG+YVLS ++ H++IN + +
Sbjct: 13 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR--- 69
Query: 90 VYERVQFQFEDDLFDTVPDLITFYVVIQPDTV 121
+F+ D FD +P L+ FY + DT
Sbjct: 70 -----RFKIGDQEFDHLPALLEFYKIHYLDTT 96
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
AWY G + R A+ ++ + G FL+RD ++ PG+YVLS ++ H++IN + +
Sbjct: 13 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR--- 69
Query: 90 VYERVQFQFEDDLFDTVPDLITFYVVIQPDTV 121
+F+ D FD +P L+ FY + DT
Sbjct: 70 -----RFKIGDQEFDHLPALLEFYKIHYLDTT 96
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 25 NRDLRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
+ L WYHGAIPR+ E++ + GDFL+R+ + YVLS + HF+I +
Sbjct: 10 QKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL- 67
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVIQ 117
D +Y + E + F ++P LI + Q
Sbjct: 68 ---DNLY-----RLEGEGFPSIPLLIDHLLSTQ 92
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 25 NRDLRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
+ L WYHGAIPR+ E++ + GDFL+R+ + YVLS + HF+I +
Sbjct: 7 QKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL- 64
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVIQ 117
D +Y + E + F ++P LI + Q
Sbjct: 65 ---DNLY-----RLEGEGFPSIPLLIDHLLSTQ 89
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 25 NRDLRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
+ L WYHGAIPR+ E++ + GDFL+R+ + YVLS + HF+I +
Sbjct: 7 QKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL- 64
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVIQ 117
D +Y + E + F ++P LI + Q
Sbjct: 65 ---DNLY-----RLEGEGFPSIPLLIDHLLSTQ 89
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
+WY G + R A +++ + G FL+RD ++ PG+YVLS ++ H++IN +P
Sbjct: 11 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 70
Query: 90 VYERV---------QFQFEDDLFDTVPDLITFYVVIQPDTV 121
+ + D FD++P L+ FY + DT
Sbjct: 71 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT 111
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
+WY G + R A +++ + G FL+RD ++ PG+YVLS ++ H++IN +P
Sbjct: 14 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 73
Query: 90 VYERV---------QFQFEDDLFDTVPDLITFYVVIQPDTV 121
+ + D FD++P L+ FY + DT
Sbjct: 74 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT 114
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
+WY G + R A +++ + G FL+RD ++ PG+YVLS ++ H++IN +P
Sbjct: 12 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 71
Query: 90 VYERV---------QFQFEDDLFDTVPDLITFYVVIQPDTV 121
+ + D FD++P L+ FY + DT
Sbjct: 72 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT 112
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
+WY G + R A +++ + G FL+RD ++ PG+YVLS ++ H++IN +P
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60
Query: 90 VYERV---------QFQFEDDLFDTVPDLITFYVVIQPDT 120
+ + D FD++P L+ FY + DT
Sbjct: 61 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT 100
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 32 AWYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
+WY G + R A +++ + G FL+RD ++ PG+YVLS ++ H++IN +P
Sbjct: 12 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 71
Query: 90 VYERV---------QFQFEDDLFDTVPDLITFYVVIQPDTV 121
+ + D FD++P L+ FY + DT
Sbjct: 72 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT 112
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 9 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 65
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 8 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 64
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The
Grb2 Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 3 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 3 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 7 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 54 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 110
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 30 SHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
SH W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 SHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 28 LRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2
Domain Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
Length = 98
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 28 LRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 1 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 28 LRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
++ H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 4 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
L H+WYHG + RS AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 12 SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRIN--- 68
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F T+ +L+ + +
Sbjct: 69 ----TTADGKVYVTAESRFSTLAELVHHHSTV 96
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 30 SHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
S AW+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 31 HAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 3 HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 31 HAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
H W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 54
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 12 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN--- 68
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 69 ----TASDGKLYVSSESRFNTLAELVHHHSTV 96
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN--- 57
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 58 ----TASDGKLYVSSESRFNTLAELVHHHSTV 85
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 5 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN--- 61
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 62 ----TASDGKLYVSSESRFNTLAELVHHHSTV 89
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 66 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN--- 122
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 123 ----TASDGKLYVSSESRFNTLAELVHHHSTV 150
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 28 LRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVI 85
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 141 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN---- 196
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 197 ---TASDGKLYVSSESRFNTLAELVHHHSTV 224
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 28 LRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVI 85
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 102 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN---- 157
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 158 ---TASDGKLYVSSESRFNTLAELVHHHSTV 185
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 28 LRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVI 85
L H+WYHG + R+ AE ++ + G FL+R+ S PG +S + + H+ IN
Sbjct: 99 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIN---- 154
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116
T + + + F+T+ +L+ + +
Sbjct: 155 ---TASDGKLYVSSESRFNTLAELVHHHSTV 182
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 32 AWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
+W+ G IPR++AEE++ ++G FLIR+ S PG++ LS HF +
Sbjct: 2 SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 53
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 23 LDNRDLRSHAWYHGAIPRSRAEEIIENEGD---FLIRDCTSQPGNYVLSCMS 71
L+ D S WYHG + +AE +++ +G+ FL+R+ SQPG++VLS +S
Sbjct: 100 LNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLS 151
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 23 LDNRDLRSHAWYHGAIPRSRAEEIIENEGD---FLIRDCTSQPGNYVLSCMS 71
L+ D S WYHG + +AE +++ +G+ FL+R+ SQPG++VLS +S
Sbjct: 100 LNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLS 151
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 30 SHAWYHGAIPRSRAEEIIENEGD---FLIRDCTSQPGNYVLSCMS 71
S WYHG + +AE +++ +G+ FL+R+ SQPG++VLS +S
Sbjct: 5 SSGWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLS 49
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 24 DNRDLRSHAWYHGAIPRSRAEEII---ENE-GDFLIRDCTSQPGNYVLSCMSKTQYLHFV 79
++R L++ W+ GAI R+ AE+ + EN+ G FLIR+ SQ G++ LS + + H+
Sbjct: 9 EDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYR 68
Query: 80 INKVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVV 115
I ++ E F +F T+ + + +Y
Sbjct: 69 IRRLD-------EGGFFLTRRKVFSTLNEFVNYYTT 97
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 33 WYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSK-TQYLHFVINKVVI--Q 86
WY + RS+AE++++ EG F++RD +S+ G Y +S +K T VI V+
Sbjct: 13 WYSKHMTRSQAEQLLKQEGKEGGFIVRD-SSKAGKYTVSVFAKSTGDPQGVIRHYVVCST 71
Query: 87 PDTVYERVQFQFEDDLFDTVPDLITFY 113
P + Y + E LF T+P+LI ++
Sbjct: 72 PQSQY----YLAEKHLFSTIPELINYH 94
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 33 WYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
WY+G + R +AE + +EGDFLIRD S P ++ +S ++ + HF KV ++ +T
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHF---KVQLK-ET 58
Query: 90 VYERVQFQFEDDLFDTVPDLITFY 113
VY Q + F T+ +L+ Y
Sbjct: 59 VYCIGQRK-----FSTMEELVEHY 77
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 33 WYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
WY+G + R +AE + +EGDFLIRD S P ++ +S ++ + HF KV ++ +T
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHF---KVQLK-ET 62
Query: 90 VYERVQFQFEDDLFDTVPDLITFY 113
VY Q + F T+ +L+ Y
Sbjct: 63 VYCIGQRK-----FSTMEELVEHY 81
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 33 WYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
WY+G + R +AE + EGDFLIRD S P ++ +S + + HF + V D
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLV----DN 62
Query: 90 VYERVQFQFEDDLFDTVPDLITFY 113
VY Q +F T+ +L+ Y
Sbjct: 63 VYCIGQRRFH-----TMDELVEHY 81
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 33 WYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
WY+G + R +AE + EGDFLIRD S P ++ +S + + HF + V D
Sbjct: 3 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLV----DN 58
Query: 90 VYERVQFQFEDDLFDTVPDLITFY 113
VY Q +F T+ +L+ Y
Sbjct: 59 VYCIGQRRFH-----TMDELVEHY 77
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 33 WYHGAIPRSRAEEII--ENEGDFLIRDCTSQPGNYVL--SCMSKTQY--LHFVINKVVIQ 86
W+HG I R +AE ++ G FL+R+ T+ PG+Y L SC K ++ + + +K+ I
Sbjct: 82 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSID 141
Query: 87 PDTVYERV 94
+ +E +
Sbjct: 142 EEVYFENL 149
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 33 WYHGAIPRSRAEEII--ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI----NKVVIQ 86
W+HG I R +AE ++ G FL+R+ T+ PG+Y L S + H+ I +K+ I
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 87 PDTVYERV 94
+ +E +
Sbjct: 70 EEVYFENL 77
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQ------YLH 77
+L ++ WY+ +I R +AE+++ EG F++RD + PG Y +S +K H
Sbjct: 4 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIKH 62
Query: 78 FVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ I + P Y ++ +FD++P LI ++
Sbjct: 63 YHIKETNDSPKRYYVAEKY-----VFDSIPLLIQYH 93
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQ------YLH 77
+L ++ WY+ +I R +AE+++ EG F++RD + PG Y +S +K H
Sbjct: 5 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIKH 63
Query: 78 FVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ I + P Y ++ +FD++P LI ++
Sbjct: 64 YHIKETNDSPKRYYVAEKY-----VFDSIPLLIQYH 94
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQ------YLH 77
+L ++ WY+ +I R +AE+++ EG F++RD + PG Y +S +K H
Sbjct: 3 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIKH 61
Query: 78 FVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ I + P Y ++ +FD++P LI ++
Sbjct: 62 YHIKETNDSPKRYYVAEKY-----VFDSIPLLIQYH 92
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 33 WYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVIN 81
W+HGAI R AE ++E++ G FLIR S G Y LS +++ HF++
Sbjct: 18 WFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVK 67
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 27 DLRSHAWYHGAIPRSRAEEII---ENEGDFLIRDCTSQPGNYVLSCMSKTQ------YLH 77
+L ++ WY+ +I R +AE+++ EG F++RD + PG Y +S +K H
Sbjct: 3 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRD-SRTPGTYTVSVFTKAIISENPCIKH 61
Query: 78 FVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ I + P Y ++ +FD++P LI ++
Sbjct: 62 YHIKETNDSPKRYYVAEKY-----VFDSIPLLIQYH 92
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 17 LEWELSLDNRDLRSHAWYHGAIPRSRAEEIIENEG---DFLIRDCTSQPGNYVLSCMS-- 71
+E + L+ D S W+HG + AE+++ +G FL+R+ S PG++VLS +
Sbjct: 96 IELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGD 155
Query: 72 --------KTQYLHFVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
K++ H +I ++ D + FD++ DL+ Y
Sbjct: 156 DKGESNDGKSKVTHVMIRCQELKYDV--------GGGERFDSLTDLVEHY 197
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 28 LRSHAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
++S W+H I AE ++ +G FL R S PG+ LS H I
Sbjct: 1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYV 114
D + + F T+ +L+ +Y+
Sbjct: 61 DYYDL--------YGGEKFATLAELVQYYM 82
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 33 WYHGAIPRSRAEEII--ENEGDFLIRDCTSQPGNYVL--SCMSKTQY--LHFVINKVVIQ 86
W+HG I R +AE ++ G FL+R+ T+ PG+Y L SC K ++ + + +K+ I
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 87 PDTVYERV 94
+ +E +
Sbjct: 70 EEVYFENL 77
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
Length = 112
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 33 WYHGAIPRSRAEEII----ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPD 88
W+HG I R +E+I+ + G FLIR G+Y L + + + LH+ I+K
Sbjct: 15 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKL 73
Query: 89 TVYERVQFQFEDDLFDTVPDLITFY 113
++ E + FDT+ L+ Y
Sbjct: 74 SIPEGKK-------FDTLWQLVEHY 91
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 29 RSHAWYHGAIPRSRAEEIIENEG----DFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
RS W+H I R A+ +I +G FL+RD S P +VLS + HF I
Sbjct: 24 RSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQI 79
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 33 WYHGAIPRSRAEEII----ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPD 88
W+HG I R +E+I+ + G FLIR G+Y L + + + LH+ I+K
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKL 218
Query: 89 TVYERVQFQFEDDLFDTVPDLITFY 113
++ E + FDT+ L+ Y
Sbjct: 219 SIPEGKK-------FDTLWQLVEHY 236
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 26 RDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKV 83
+DL H WY G + R+ AE I+ N +G FL+R + +S + H I
Sbjct: 4 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKI--- 60
Query: 84 VIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ + +Y R+ E F + +L+ FY
Sbjct: 61 -MTAEGLY-RIT---EKKAFRGLTELVEFY 85
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 26 RDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKV 83
+DL H WY G + R+ AE I+ N +G FL+R + +S + H I
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKI--- 77
Query: 84 VIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ + +Y R+ E F + +L+ FY
Sbjct: 78 -MTAEGLY-RIT---EKKAFRGLTELVEFY 102
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 33 WYHGAIPRSRAEEIIE----NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
+++G+I R+ AEE ++ +G FL+R C G YVLS + ++ HF I +
Sbjct: 13 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 66
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 33 WYHGAIPRSRAEEIIE----NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
+++G+I R+ AEE ++ +G FL+R C G YVLS + ++ HF I +
Sbjct: 8 FFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 61
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 33 WYHGAIPRSRAEEIIE----NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
+++G+I R+ AEE ++ +G FL+R C G YVLS + ++ HF I +
Sbjct: 10 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 63
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 33 WYHGAIPRSRAEEII----ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
W+HG I R +E+I+ + G FLIR G+Y L + + + LH+ I+K
Sbjct: 168 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDK 220
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 33 WYHGAIPRSRAEEII----ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
W+HG I R +E+I+ + G FLIR G+Y L + + + LH+ I+K
Sbjct: 169 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDK 221
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 23 LDNRDLRSHAWYHGAIPRSRAEEI-IENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVIN 81
++NR +HG I R A+++ I EG +LIR+ QPG Y L+ +Q +F +
Sbjct: 43 VENRPKYYGREFHGMISREAADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRL- 101
Query: 82 KVVIQPDTVYERVQFQFEDDLFDTVPDLIT 111
Y+ F E F+++ DL+T
Sbjct: 102 --------YYDGKHFVGEKR-FESIHDLVT 122
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 29 RSHAWYHGAIPRSRAEEIIENE----GDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
R+ W+HG I R + II+ + G FL+RD S P +VL+ + +F I
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQI 58
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 29 RSHAWYHGAIPRSRAEEIIENE----GDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
R+ W+HG I R + II+ + G FL+RD S P +VL+ + +F I
Sbjct: 3 RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQI 58
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 29 RSHAWYHGAIPRSRAEEIIENE----GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
R+ W+HG I R ++ +I + G FL+R+ P +VLS + H+ +
Sbjct: 15 RTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHY-----L 69
Query: 85 IQPDTVYERVQFQFEDD--LFDTVPDLITFY 113
I P R+ F +D F + L+ F+
Sbjct: 70 ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFH 100
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 29 RSHAWYHGAIPRSRAEEIIENE----GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
R+ W+HG I R ++ +I + G FL+R+ P +VLS + H+ +
Sbjct: 12 RTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHY-----L 66
Query: 85 IQPDTVYERVQFQFEDD--LFDTVPDLITFY 113
I P R+ F +D F + L+ F+
Sbjct: 67 ILPSEEEGRLYFSMDDGQTRFTDLLQLVEFH 97
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 33 WYHGAIPRSRAEEII--ENEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTV 90
WY G I R++AEE++ + +G FLIR+ +SQ G Y S + H VI +
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRE-SSQRGCYACSVVVDGDTKHCVIYRTA------ 248
Query: 91 YERVQFQFED--DLFDTVPDLITFY 113
F F + +L+ ++ +L+ Y
Sbjct: 249 ---TGFGFAEPYNLYGSLKELVLHY 270
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSC-MSKTQYLHFVINK 82
+L + WYH I R++AE ++ EG F++RD + G+Y +S M + I
Sbjct: 12 NLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRD-SRHLGSYTISVFMGARRSTEAAIKH 70
Query: 83 VVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
I+ + + + E F ++P+LI ++
Sbjct: 71 YQIKKNDSGQ--WYVAERHAFQSIPELIWYH 99
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 34 YHGAIPRSRAEEIIEN-EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYE 92
+HG I R +A+E++ EG +++R+ QPG Y L+ Q L++ + D +
Sbjct: 58 FHGIISREQADELLGGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH-----DGKHF 112
Query: 93 RVQFQFEDDLFDTVPD-LITFYV 114
+ +FE + D V D LIT Y+
Sbjct: 113 VGEKRFE-SIHDLVTDGLITLYI 134
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 33 WYHGAIPRSRAEEIIENE--GDFLIRDCTSQPGNYVLSCMSKTQYLHFVINK 82
W+H + R +AE ++ + G F+IR S PG++ +S + HF + +
Sbjct: 11 WFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMR 62
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 33 WYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI-----NKVV 84
W HG I RS+AEE++ +G FL+R S Y L + + + I +K
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFY 113
+Q E V +F F + LI FY
Sbjct: 72 VQAS---EGVSMRF----FTKLDQLIEFY 93
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 33 WYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
W+HG I A + ++ +G FL+R+ PG+YVL +H+ +
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRV 55
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 33 WYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVI 80
W+HG I A + ++ +G FL+R+ PG+YVL +H+ +
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRV 56
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 27 DLRSHAWYHGAIPRSRAEEII-----ENEGDFLIRDCTSQPGNYVLS--CMSKTQYLHFV 79
+L + W+HG + R +A +++ + G F+IR ++PG VL+ K ++L
Sbjct: 7 ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 66
Query: 80 IN 81
+N
Sbjct: 67 LN 68
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 27 DLRSHAWYHGAIPRSRAEEII-----ENEGDFLIRDCTSQPGNYVLS--CMSKTQYLHFV 79
+L + W+HG + R +A +++ + G F+IR ++PG VL+ K ++L
Sbjct: 7 ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 66
Query: 80 IN 81
+N
Sbjct: 67 LN 68
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 26 RDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKV 83
R+L WY G++ + A+E ++ EG FLIRD S + YL + K
Sbjct: 12 RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDS------------SHSDYLLTISVKT 59
Query: 84 VIQPDTV---YERVQFQFEDDL--------FDTVPDLITFYVVIQPD 119
P + Y+ +F+ + + FD+V LI +YV + D
Sbjct: 60 SAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKD 106
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 32 AWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPD 88
A YHG I R E+++ +G +L+RD S PG Y L + Y ++ V Q +
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVL----YHGYIYTYRVSQTE 60
Query: 89 T 89
T
Sbjct: 61 T 61
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 28 LRSHAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVV 84
+ S W+H I AE ++ +G FL R S PG++ LS H I
Sbjct: 4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63
Query: 85 IQPDTVYERVQFQFEDDLFDTVPDLITFYV 114
D + + F T+ +L+ +Y+
Sbjct: 64 DYYDL--------YGGEKFATLAELVQYYM 85
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
A Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 32 AWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPD 88
A YHG I R E+++ +G +L+RD S PG Y L + Y ++ V Q +
Sbjct: 5 AVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVL----YHGYIYTYRVSQTE 60
Query: 89 T 89
T
Sbjct: 61 T 61
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 30 SHAWYHGAIPRSRAEEIIENEGD----FLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVI 85
S W+ G I RS A ++ EG+ FLIR +YVLS H+ I +
Sbjct: 1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLITFY 113
+ E V F ++P+L+ ++
Sbjct: 61 GRLHLNEAVSFL-------SLPELVNYH 81
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 21 LSLDNRDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHF 78
L+ + + L WY G I R AE + N +G FL+RD + LS S + LH
Sbjct: 14 LTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73
Query: 79 VI 80
I
Sbjct: 74 RI 75
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 33 WYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDT 89
W+H I AE ++ +G FL R S PG++ LS H I D
Sbjct: 4 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDL 63
Query: 90 VYERVQFQFEDDLFDTVPDLITFYV 114
+ + F T+ +L+ +Y+
Sbjct: 64 --------YGGEKFATLAELVQYYM 80
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 30 SHAWYHGAIPRSR-----AEEIIEN--------EGDFLIRDCTSQPGNYVLSCMSKTQYL 76
S W+HG + R AE ++ +G FL+R+ + G+Y LS +
Sbjct: 3 SEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQ 62
Query: 77 HFVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
H I+ + D + F ++ +FD++ DLIT Y
Sbjct: 63 HCRIHS---RQDAGTPKF-FLTDNLVFDSLYDLITHY 95
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 28 LRSHAWYHGAIPRSRAEEII-----ENEGDFLIRDCTSQPGNYVLS--CMSKTQYLHFVI 80
L + W+HG + R +A +++ + G FL+R ++ G VL+ K ++L +
Sbjct: 6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSL 65
Query: 81 NKV 83
N
Sbjct: 66 NAA 68
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam
Phosphopeptide
Length = 103
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 33 WYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMS 71
+YHG + + E ++ +G+FLIRD S PG L C+S
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCL-CVS 45
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 33 WYHGAIPRSR-----AEEIIEN--------EGDFLIRDCTSQPGNYVLSCMSKTQYLHFV 79
W+HG + R AE ++ +G FL+R+ + G+Y LS + H
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 80 INKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
I+ + D + F ++ +FD++ DLIT Y
Sbjct: 66 IHS---RQDAGTPKF-FLTDNLVFDSLYDLITHY 95
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 33 WYHGAIPRSR-----AEEIIEN--------EGDFLIRDCTSQPGNYVLSCMSKTQYLHFV 79
W+HG + R AE ++ +G FL+R+ + G+Y LS + H
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 80 INKVVIQPDTVYERVQFQFEDDLFDTVPDLITFY 113
I+ + D + F ++ +FD++ DLIT Y
Sbjct: 66 IHS---RQDAGTPKF-FLTDNLVFDSLYDLITHY 95
>pdb|2G2D|A Chain A, Crystal Structure Of A Putative Pduo-Type Atp:cobalamin
Adenosyltransferase From Mycobacterium Tuberculosis
Length = 193
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 86 QPDTVYERVQFQFEDDLFDTVPDLITFYVVIQPDTVYERVQFQFEDDLFD-------TVP 138
PDT V Q ++DLFD DL T +V P R+ + D L +P
Sbjct: 54 HPDTQITDVLRQIQNDLFDAGADLST-PIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLP 112
Query: 139 DLITFYVGSGKPISSL 154
L +F + G P+S+L
Sbjct: 113 ALKSFVLPGGSPLSAL 128
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 115 VIQPDTVYERVQFQFEDDLFDTV-PDLITFYVGSGKPISSLSGAKIKSPKNRYSCDILVV 173
+++ ++ +V + E D+ ++V P TF+V K S G I SP +R D LV+
Sbjct: 80 LLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVI 139
Query: 174 SNAKQS 179
S+ K+
Sbjct: 140 SDIKKG 145
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 27 DLRSHAWYHGAIPRSRAEEIIE---NEGDFLIRDCTSQ 61
+L WY GA R AEE + +G FLIR +
Sbjct: 19 ELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGH 56
>pdb|1XIW|B Chain B, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
pdb|1XIW|F Chain F, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
Length = 79
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 128 QFEDDLFDTVPDLITFYVGS-GKPISSLS----GAKIKSPKNRYSCDILVVSNAKQSKSL 182
+ ED +F IT+ G+ G +S ++ G +I P+ Y C+ + K+S
Sbjct: 7 ELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQ 66
Query: 183 SNIRMCINC 191
+ RMC +C
Sbjct: 67 VHYRMCQSC 75
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 33 WYHGAI-PRSRAEEIIE--------NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKV 83
W+H + R+ AE++++ +G FL+R+ + P +Y LS + H I
Sbjct: 24 WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 84 VIQPDTVYERVQFQFEDDL-FDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPD 139
+ +++ D+L F+++ LI Y +FE L D VP+
Sbjct: 84 MEN-----GVMKYYLTDNLTFNSIYALIQHYREAHLRCA------EFELRLTDPVPN 129
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 100 DDLFDTVPDLITFYVVIQPDTVY 122
DD DTV DL++ ++V+QP Y
Sbjct: 254 DDYSDTVKDLVSRFLVVQPQKRY 276
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 100 DDLFDTVPDLITFYVVIQPDTVY 122
DD DTV DL++ ++V+QP Y
Sbjct: 254 DDYSDTVKDLVSRFLVVQPQKRY 276
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 100 DDLFDTVPDLITFYVVIQPDTVY 122
DD DTV DL++ ++V+QP Y
Sbjct: 241 DDYSDTVKDLVSRFLVVQPQKRY 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,916,372
Number of Sequences: 62578
Number of extensions: 239235
Number of successful extensions: 645
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 123
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)