Query psy5180
Match_columns 192
No_of_seqs 183 out of 1410
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:24:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00252 SH2 Src homology 2 99.9 2.2E-21 4.8E-26 135.9 10.3 80 31-118 1-83 (84)
2 cd00173 SH2 Src homology 2 dom 99.8 1.1E-20 2.4E-25 134.5 10.6 78 32-117 1-81 (94)
3 PF00017 SH2: SH2 domain; Int 99.8 4.8E-21 1E-25 132.2 8.3 73 33-113 1-77 (77)
4 KOG0790|consensus 99.7 2.5E-18 5.4E-23 150.7 7.0 102 11-121 90-204 (600)
5 KOG4637|consensus 99.7 4.7E-18 1E-22 145.8 7.3 112 25-175 17-131 (464)
6 KOG4792|consensus 99.7 2.3E-17 5E-22 133.8 7.4 96 25-121 5-102 (293)
7 KOG0194|consensus 99.7 7.8E-17 1.7E-21 144.8 9.4 106 26-171 44-155 (474)
8 KOG4226|consensus 99.7 1.4E-16 3.1E-21 132.3 7.9 89 21-118 271-362 (379)
9 KOG4278|consensus 99.6 3.8E-16 8.2E-21 142.6 7.4 91 24-121 145-237 (1157)
10 KOG1264|consensus 99.6 7.9E-16 1.7E-20 142.5 6.1 113 14-145 632-747 (1267)
11 KOG1264|consensus 99.6 8.4E-15 1.8E-19 135.8 8.9 86 29-118 532-626 (1267)
12 KOG2996|consensus 99.5 3.4E-15 7.4E-20 134.5 4.6 99 26-145 680-782 (865)
13 KOG0197|consensus 99.4 2.5E-13 5.4E-18 121.4 7.5 89 26-121 76-176 (468)
14 KOG4637|consensus 99.4 2.6E-13 5.6E-18 116.8 4.5 122 31-166 332-456 (464)
15 KOG0790|consensus 99.2 4.7E-11 1E-15 105.4 7.6 79 30-117 3-85 (600)
16 KOG3601|consensus 99.2 3E-12 6.5E-17 103.0 -0.6 86 24-117 51-138 (222)
17 KOG3697|consensus 98.8 3.4E-09 7.4E-14 89.0 5.1 99 28-166 198-344 (345)
18 KOG1930|consensus 98.8 8.7E-09 1.9E-13 90.3 4.7 94 29-128 210-320 (483)
19 KOG3751|consensus 98.4 1.4E-07 3.1E-12 84.9 3.1 86 27-117 515-606 (622)
20 PF14633 SH2_2: SH2 domain; PD 97.9 0.00012 2.5E-09 60.4 9.3 84 29-114 36-122 (220)
21 KOG4566|consensus 96.9 0.0018 4E-08 54.5 5.2 79 27-114 48-136 (258)
22 KOG1856|consensus 96.1 0.011 2.4E-07 58.2 5.9 87 26-114 1103-1192(1299)
23 PF14633 SH2_2: SH2 domain; PD 95.8 0.0069 1.5E-07 50.0 2.7 95 12-116 113-219 (220)
24 KOG1856|consensus 93.0 0.23 4.9E-06 49.5 6.1 83 26-118 1200-1289(1299)
25 cd00173 SH2 Src homology 2 dom 91.8 0.22 4.9E-06 34.4 3.4 31 131-163 64-94 (94)
26 PF02762 Cbl_N3: CBL proto-onc 77.9 9.7 0.00021 26.4 5.5 43 31-73 2-48 (86)
27 smart00252 SH2 Src homology 2 67.7 5.1 0.00011 27.0 2.4 17 131-147 65-81 (84)
28 KOG4226|consensus 61.5 3.8 8.3E-05 35.1 0.9 46 112-164 330-378 (379)
29 KOG4792|consensus 59.5 4.2 9E-05 34.0 0.8 52 110-168 57-113 (293)
30 smart00557 IG_FLMN Filamin-typ 55.4 17 0.00036 25.3 3.3 24 50-73 55-78 (93)
31 PF00630 Filamin: Filamin/ABP2 52.0 16 0.00034 25.3 2.7 24 50-73 69-92 (101)
32 KOG3667|consensus 46.8 33 0.00071 32.9 4.6 55 27-81 559-616 (682)
33 KOG3508|consensus 43.5 12 0.00027 36.9 1.4 53 31-83 81-137 (932)
34 KOG0197|consensus 37.0 10 0.00023 34.8 -0.2 57 104-165 129-185 (468)
35 PF07935 SSV1_ORF_D-335: ORF D 36.9 1.1E+02 0.0024 20.8 4.7 14 104-117 36-49 (72)
36 KOG3554|consensus 32.9 57 0.0012 30.2 3.7 36 157-192 353-393 (693)
37 COG1724 Predicted RNA binding 32.5 59 0.0013 21.7 2.8 23 37-59 6-28 (66)
38 PF15517 TBPIP_N: TBP-interact 30.7 48 0.001 23.6 2.3 11 38-48 47-57 (99)
39 COG5453 Uncharacterized conser 30.0 1.4E+02 0.0031 21.2 4.5 21 50-70 28-49 (96)
40 KOG1785|consensus 25.2 1.1E+02 0.0024 27.8 4.2 43 31-73 256-302 (563)
41 PF07240 Turandot: Stress-indu 24.0 54 0.0012 23.0 1.6 41 102-149 8-48 (85)
42 KOG3508|consensus 23.2 4.3 9.3E-05 40.0 -5.4 80 27-114 226-309 (932)
43 PF09430 DUF2012: Protein of u 22.0 90 0.0019 23.0 2.6 36 46-83 25-61 (123)
No 1
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.86 E-value=2.2e-21 Score=135.91 Aligned_cols=80 Identities=36% Similarity=0.704 Sum_probs=70.0
Q ss_pred CcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCC-CCcCCHH
Q psy5180 31 HAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFED-DLFDTVP 107 (192)
Q Consensus 31 ~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~-~~F~sL~ 107 (192)
++||||.|+|++||++|.+ +|+||||.|.+.++.|+||++.++.++|++|.... .+.|.+++ ..|+||.
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~--------~~~~~l~~~~~F~sl~ 72 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNE--------DGKFYLDGGRKFPSLV 72 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECC--------CCcEEECCCCccCCHH
Confidence 4899999999999999986 79999999988789999999999999999998863 25677775 7888998
Q ss_pred HHHHHhHHhcc
Q psy5180 108 DLITFYVVIQP 118 (192)
Q Consensus 108 eLI~~Y~~~~l 118 (192)
+||+||+.+++
T Consensus 73 eLI~~y~~~~~ 83 (84)
T smart00252 73 ELVEHYQKNSL 83 (84)
T ss_pred HHHHHHhhCCC
Confidence 88888887654
No 2
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.85 E-value=1.1e-20 Score=134.46 Aligned_cols=78 Identities=37% Similarity=0.715 Sum_probs=61.5
Q ss_pred cccccCCCHHHHHHhhh--cCCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeC-CCCcCCHHH
Q psy5180 32 AWYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFE-DDLFDTVPD 108 (192)
Q Consensus 32 ~WyhG~isr~eAe~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~-~~~F~sL~e 108 (192)
+||||.|+|++||++|+ .+|+||||.|.+.++.|+||++.++.++|++|.... ++.+... ...|+||.|
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~--------~~~~~~~~~~~f~sl~e 72 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTD--------DGYYLLGEGRSFPSLPE 72 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECC--------CCeEEecCCCccCCHHH
Confidence 69999999999999999 699999999988889999999999999999998863 2333332 445555555
Q ss_pred HHHHhHHhc
Q psy5180 109 LITFYVVIQ 117 (192)
Q Consensus 109 LI~~Y~~~~ 117 (192)
||+||+.+.
T Consensus 73 Lv~~y~~~~ 81 (94)
T cd00173 73 LIEHYQKNP 81 (94)
T ss_pred HHHHHhhCc
Confidence 555554443
No 3
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.85 E-value=4.8e-21 Score=132.19 Aligned_cols=73 Identities=36% Similarity=0.726 Sum_probs=64.4
Q ss_pred ccccCCCHHHHHHhhhc---CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEe-CCCCcCCHHH
Q psy5180 33 WYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQF-EDDLFDTVPD 108 (192)
Q Consensus 33 WyhG~isr~eAe~lL~~---~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~-~~~~F~sL~e 108 (192)
||||.|+|++||++|++ +|+||||.|.+.+|.|+|||+..++++|++|.+.. ++.|.+ ++..|+||.+
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~--------~~~~~~~~~~~F~sl~~ 72 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTE--------NGGYFLSDGKKFPSLSD 72 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEET--------TSEEESSTSSEBSSHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecC--------CceEEccCCCcCCCHHH
Confidence 99999999999999986 99999999998899999999999999999999874 343444 4577888888
Q ss_pred HHHHh
Q psy5180 109 LITFY 113 (192)
Q Consensus 109 LI~~Y 113 (192)
||+||
T Consensus 73 LV~~y 77 (77)
T PF00017_consen 73 LVEHY 77 (77)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88887
No 4
>KOG0790|consensus
Probab=99.74 E-value=2.5e-18 Score=150.68 Aligned_cols=102 Identities=25% Similarity=0.515 Sum_probs=88.6
Q ss_pred HHHHHHhhhhhcCCccCCCCCcccccCCCHHHHHHhhh---cCCcEEEEecCCCCCcEEEEEeeCC---------eEEEE
Q psy5180 11 LQLKKALEWELSLDNRDLRSHAWYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSKT---------QYLHF 78 (192)
Q Consensus 11 ~~~~~~~~~~~~~~~~~L~~~~WyhG~isr~eAe~lL~---~~G~FLVR~S~~~~g~~~LSv~~~~---------~v~H~ 78 (192)
||-...++...|+++.+-.++.||||.++.++||+||. ++|+||||+|.+.||+|||||+.++ +|.|+
T Consensus 90 ekng~~ielK~pl~cAdptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHv 169 (600)
T KOG0790|consen 90 EKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHV 169 (600)
T ss_pred hcCCCEEEecCCCccCCchhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEE
Confidence 44445677788889998999999999999999999995 3999999999999999999999976 89999
Q ss_pred EEEEeeecCCccccceeEEeC-CCCcCCHHHHHHHhHHhccccc
Q psy5180 79 VINKVVIQPDTVYERVQFQFE-DDLFDTVPDLITFYVVIQPDTV 121 (192)
Q Consensus 79 ~I~~~~~~~~~~~~~~~~~~~-~~~F~sL~eLI~~Y~~~~l~~~ 121 (192)
.|++. .++|.++ +.+|.||.+||+||+.+++...
T Consensus 170 mI~~q---------~~kydVGgge~F~sltdLidhykknpmvEt 204 (600)
T KOG0790|consen 170 MIRCQ---------EGKYDVGGGERFDSLTDLVEHYKKNPMVET 204 (600)
T ss_pred EEEec---------ccccccCCccccchHHHHHHHhccCchhhh
Confidence 99996 4678887 6789999999999998887544
No 5
>KOG4637|consensus
Probab=99.73 E-value=4.7e-18 Score=145.77 Aligned_cols=112 Identities=23% Similarity=0.435 Sum_probs=91.5
Q ss_pred ccCCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCCC
Q psy5180 25 NRDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDDL 102 (192)
Q Consensus 25 ~~~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
.++|..++||||.|+|+++.+.|+. ||+||||+..+-+|.|+|+++.+|.++-++|.+.+ |+|-+.
T Consensus 17 ~~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~D---------gKyGF~--- 84 (464)
T KOG4637|consen 17 EDELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRD---------GKYGFS--- 84 (464)
T ss_pred chhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEec---------CccCCC---
Confidence 4558999999999999999999984 99999999888899999999999999999999874 445333
Q ss_pred cCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcC-CCCceecCcccCCCCCcccccC
Q psy5180 103 FDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISS-LSGAKIKSPKNRYSCDILVVSN 175 (192)
Q Consensus 103 F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~-~~~~~L~~Pv~r~~~~~~~~~~ 175 (192)
+...|+||.+||+||......+-. +-.++|..||.|...++.+.+.
T Consensus 85 ---------------------------d~ltf~SVVelIn~yr~~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~ 131 (464)
T KOG4637|consen 85 ---------------------------DPLTFNSVVELINHYRNESLAQYNPKLDVRLLYPVSRYRQDQNVKPD 131 (464)
T ss_pred ---------------------------CchhhHHHHHHHHHHhhhHHHhhCcccceeeechHHHhhhccccCCC
Confidence 256788888888888876655533 3468999999998887776554
No 6
>KOG4792|consensus
Probab=99.71 E-value=2.3e-17 Score=133.81 Aligned_cols=96 Identities=30% Similarity=0.624 Sum_probs=81.2
Q ss_pred ccCCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCCC
Q psy5180 25 NRDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDDL 102 (192)
Q Consensus 25 ~~~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
.+.-+...||+|.|+|+||.++|+. .|.||||+|.+.+|+|+|||+-+.+|.||.|......+.+- .-..|.|+++.
T Consensus 5 FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~-~~~~~rIgdQ~ 83 (293)
T KOG4792|consen 5 FDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQP-PPSRLRIGDQE 83 (293)
T ss_pred cChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCC-Ccceeeecccc
Confidence 3455667899999999999999984 89999999999999999999999999999998753322211 12379999999
Q ss_pred cCCHHHHHHHhHHhccccc
Q psy5180 103 FDTVPDLITFYVVIQPDTV 121 (192)
Q Consensus 103 F~sL~eLI~~Y~~~~l~~~ 121 (192)
|++|+.|++||+.+.|++.
T Consensus 84 Fd~lPaLL~fykihyLdtt 102 (293)
T KOG4792|consen 84 FDSLPALLEFYKIHYLDTT 102 (293)
T ss_pred ccchHHHHhheeEeeeccc
Confidence 9999999999999998765
No 7
>KOG0194|consensus
Probab=99.69 E-value=7.8e-17 Score=144.83 Aligned_cols=106 Identities=31% Similarity=0.543 Sum_probs=87.6
Q ss_pred cCCCCCcccccCCCHHHHHHhhhcCCcEEEEecCCCCCc---E-EEEEeeC--CeEEEEEEEEeeecCCccccceeEEeC
Q psy5180 26 RDLRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGN---Y-VLSCMSK--TQYLHFVINKVVIQPDTVYERVQFQFE 99 (192)
Q Consensus 26 ~~L~~~~WyhG~isr~eAe~lL~~~G~FLVR~S~~~~g~---~-~LSv~~~--~~v~H~~I~~~~~~~~~~~~~~~~~~~ 99 (192)
..+..++||||.+.|++|+.+|.++|+||||.|+..+|. + +|||++. .+++||.|.... +++|...
T Consensus 44 ~~~~~~~~yHG~l~red~~~lL~~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~--------~~~~~~~ 115 (474)
T KOG0194|consen 44 KDLRELPYYHGLLPREDAEKLLKNDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNG--------NLFFFEG 115 (474)
T ss_pred hHhhcCccccccccHhHHHHHhCCCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcC--------CeeEEec
Confidence 445568999999999999999999999999999876652 4 9999985 789999999863 3334333
Q ss_pred CCCcCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcCCCCceecCcccCCCCCcc
Q psy5180 100 DDLFDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISSLSGAKIKSPKNRYSCDIL 171 (192)
Q Consensus 100 ~~~F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~~~~~~L~~Pv~r~~~~~~ 171 (192)
...|+++.+||.||+.+..++.... ..|++||.|++|++.
T Consensus 116 -------------------------------~~~F~si~~li~~~~~~~~~~~~~~-~~L~~PI~r~~Wel~ 155 (474)
T KOG0194|consen 116 -------------------------------LRKFPTISELVNYYKFSKLEITGKN-FFLKRPIPRQKWELS 155 (474)
T ss_pred -------------------------------cccCCcHHHHHHHHHhcccceeccc-eeecccccccccEEe
Confidence 5788999999999999888887655 489999999999765
No 8
>KOG4226|consensus
Probab=99.67 E-value=1.4e-16 Score=132.35 Aligned_cols=89 Identities=29% Similarity=0.514 Sum_probs=76.8
Q ss_pred hcCCccCCCCCcccccCCCHHHHHHhhh---cCCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEE
Q psy5180 21 LSLDNRDLRSHAWYHGAIPRSRAEEIIE---NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQ 97 (192)
Q Consensus 21 ~~~~~~~L~~~~WyhG~isr~eAe~lL~---~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~ 97 (192)
.|.....+...+||.|.|+|.+||.+|. .+|+||||+|++.+|+|.+|++..++-+||+++.. .+.|.
T Consensus 271 ~p~~sg~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~---------d~~yc 341 (379)
T KOG4226|consen 271 GPSSSGRFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLV---------DNVYC 341 (379)
T ss_pred CCCccccccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEe---------cceEE
Confidence 3334455888999999999999999995 39999999999999999999999999999999886 46899
Q ss_pred eCCCCcCCHHHHHHHhHHhcc
Q psy5180 98 FEDDLFDTVPDLITFYVVIQP 118 (192)
Q Consensus 98 ~~~~~F~sL~eLI~~Y~~~~l 118 (192)
|+..+|.++.+||+||+..++
T Consensus 342 IGqRkF~tmd~Lv~HY~kaPI 362 (379)
T KOG4226|consen 342 IGQRKFHTMDELVEHYKKAPI 362 (379)
T ss_pred eccceeccHHHHHHhhhcCCc
Confidence 998888888888888876553
No 9
>KOG4278|consensus
Probab=99.63 E-value=3.8e-16 Score=142.63 Aligned_cols=91 Identities=29% Similarity=0.572 Sum_probs=80.7
Q ss_pred CccCCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCC
Q psy5180 24 DNRDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDD 101 (192)
Q Consensus 24 ~~~~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+..+|+.+.||||.++|..||.+|.. +|+||||+|++.+|+|+||++++|+|+||+|.... ++..|...+.
T Consensus 145 PvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~-------dgK~yvt~Es 217 (1157)
T KOG4278|consen 145 PVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDN-------DGKMYVTQES 217 (1157)
T ss_pred cccchhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccC-------CccEEEeehh
Confidence 56789999999999999999999985 99999999999999999999999999999998764 1346777788
Q ss_pred CcCCHHHHHHHhHHhccccc
Q psy5180 102 LFDTVPDLITFYVVIQPDTV 121 (192)
Q Consensus 102 ~F~sL~eLI~~Y~~~~l~~~ 121 (192)
+|.+|.|||-|+...+-+.|
T Consensus 218 rF~TLaELVHHHStvADGLi 237 (1157)
T KOG4278|consen 218 RFRTLAELVHHHSTVADGLI 237 (1157)
T ss_pred hhhHHHHHHhhcccccccee
Confidence 99999999999988875554
No 10
>KOG1264|consensus
Probab=99.60 E-value=7.9e-16 Score=142.54 Aligned_cols=113 Identities=21% Similarity=0.412 Sum_probs=91.2
Q ss_pred HHHhhhhhcCCccCCCCCcccccCCCHHHHHHhhhc---CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCcc
Q psy5180 14 KKALEWELSLDNRDLRSHAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTV 90 (192)
Q Consensus 14 ~~~~~~~~~~~~~~L~~~~WyhG~isr~eAe~lL~~---~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~ 90 (192)
+++|.+-+| ++..+++++|||..++|++||++|.. ||+||||.+ .....|+||++.+|+++|++|.+.
T Consensus 632 ~m~LtePvP-qp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~-~~~nsy~iSfr~~gkikHcRi~rd------- 702 (1267)
T KOG1264|consen 632 EMRLTEPVP-QPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKR-EGSNSYAISFRARGKIKHCRINRD------- 702 (1267)
T ss_pred EEEecCCCC-CCCcccCCccccccccHHHHHHHHhhCccCcceEEEec-cCCceEEEEEEEcCcEeEEEEccC-------
Confidence 344555555 66889999999999999999999984 899999944 556789999999999999999874
Q ss_pred ccceeEEeCCCCcCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHH
Q psy5180 91 YERVQFQFEDDLFDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYV 145 (192)
Q Consensus 91 ~~~~~~~~~~~~F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~ 145 (192)
+..|.++...|+||.+||+||..+++-.- + .-.|+--.++|++|.
T Consensus 703 --Gr~fvl~t~~FesLv~lv~yY~k~~lyR~---m-----kLr~PVnee~l~~~~ 747 (1267)
T KOG1264|consen 703 --GRHFVLGTSAFESLVELVSYYEKHPLYRK---M-----KLRYPVNEELLERYN 747 (1267)
T ss_pred --ceEEEeccHHHHHHHHHHHHHhcChhhhc---c-----cccCcCCHHHHHHhh
Confidence 46799999999999999999999987221 1 224555567777766
No 11
>KOG1264|consensus
Probab=99.56 E-value=8.4e-15 Score=135.83 Aligned_cols=86 Identities=24% Similarity=0.472 Sum_probs=69.6
Q ss_pred CCCcccccCCC-HHHHHHhhh--------cCCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeC
Q psy5180 29 RSHAWYHGAIP-RSRAEEIIE--------NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFE 99 (192)
Q Consensus 29 ~~~~WyhG~is-r~eAe~lL~--------~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~ 99 (192)
-.+.||||.+- |.+|+++|+ .+|+||||+|+...|+|+||+..+|+|.|++|+....+. ....|..+
T Consensus 532 ~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~g----t~Kyyl~d 607 (1267)
T KOG1264|consen 532 FGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGG----TLKYYLTD 607 (1267)
T ss_pred cchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCC----ceeEEEec
Confidence 45799999999 999999996 299999999999999999999999999999998875321 13456666
Q ss_pred CCCcCCHHHHHHHhHHhcc
Q psy5180 100 DDLFDTVPDLITFYVVIQP 118 (192)
Q Consensus 100 ~~~F~sL~eLI~~Y~~~~l 118 (192)
+..|+||++||.||+.+.|
T Consensus 608 N~vfdslY~LI~~Y~~~~L 626 (1267)
T KOG1264|consen 608 NLVFDSLYALIQHYRETHL 626 (1267)
T ss_pred chhHHHHHHHHHHHHhccc
Confidence 6667777777666666654
No 12
>KOG2996|consensus
Probab=99.55 E-value=3.4e-15 Score=134.47 Aligned_cols=99 Identities=22% Similarity=0.514 Sum_probs=87.1
Q ss_pred cCCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeC-CCC
Q psy5180 26 RDLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFE-DDL 102 (192)
Q Consensus 26 ~~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~-~~~ 102 (192)
.++..++||.|.|-|..||.+|++ +|+||||.+....+.|+||+++++.|+|++|... .|++.+. +..
T Consensus 680 ~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~---------dg~~~i~E~k~ 750 (865)
T KOG2996|consen 680 TDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN---------DGKVHITEDKK 750 (865)
T ss_pred cchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEec---------CCeEEechhhh
Confidence 467788999999999999999985 9999999998778899999999999999999876 3555555 789
Q ss_pred cCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHH-HH
Q psy5180 103 FDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITF-YV 145 (192)
Q Consensus 103 F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~-y~ 145 (192)
|.|+.|||+||+.|.| .+.|.++...+.| |.
T Consensus 751 F~sl~ELVeyYq~~sL------------ke~Fk~LDTtLk~Pyk 782 (865)
T KOG2996|consen 751 FNSLVELVEYYQSHSL------------KEIFKALDTTLKFPYK 782 (865)
T ss_pred hhhHHHHHHHHHhccH------------HHHHHHhhhhhcCCCc
Confidence 9999999999999998 7788888888877 44
No 13
>KOG0197|consensus
Probab=99.43 E-value=2.5e-13 Score=121.45 Aligned_cols=89 Identities=26% Similarity=0.507 Sum_probs=72.3
Q ss_pred cCCCCCcccccCCCHHHHHHhhhc----CCcEEEEecCCCCCcEEEEEeeCC------eEEEEEEEEeeecCCcccccee
Q psy5180 26 RDLRSHAWYHGAIPRSRAEEIIEN----EGDFLIRDCTSQPGNYVLSCMSKT------QYLHFVINKVVIQPDTVYERVQ 95 (192)
Q Consensus 26 ~~L~~~~WyhG~isr~eAe~lL~~----~G~FLVR~S~~~~g~~~LSv~~~~------~v~H~~I~~~~~~~~~~~~~~~ 95 (192)
..++.++||+|.|+|++||+.|.. .|+||||+|++.+|.|+|||+... .|+|++|...+. +++
T Consensus 76 ~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~-------~~~ 148 (468)
T KOG0197|consen 76 IKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDG-------GGL 148 (468)
T ss_pred cccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCC-------CCe
Confidence 678899999999999999966642 699999999999999999999876 899999998752 223
Q ss_pred E-EeC-CCCcCCHHHHHHHhHHhccccc
Q psy5180 96 F-QFE-DDLFDTVPDLITFYVVIQPDTV 121 (192)
Q Consensus 96 ~-~~~-~~~F~sL~eLI~~Y~~~~l~~~ 121 (192)
+ .++ ...|.+|.+||+||+.+..+..
T Consensus 149 ~~~~~~~~~F~~l~~lv~~~~~~~~gl~ 176 (468)
T KOG0197|consen 149 YPYIDERELFSSLQQLVNYYSKNADGLC 176 (468)
T ss_pred ecCCCHHHhhhhHHHHHhhhhccCcchh
Confidence 3 244 5688888888888888775443
No 14
>KOG4637|consensus
Probab=99.39 E-value=2.6e-13 Score=116.83 Aligned_cols=122 Identities=23% Similarity=0.383 Sum_probs=91.6
Q ss_pred CcccccCCCHHHHHHhhh--cCCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCCCcCCHHH
Q psy5180 31 HAWYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDDLFDTVPD 108 (192)
Q Consensus 31 ~~WyhG~isr~eAe~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~F~sL~e 108 (192)
.-|+.+.+.|..||.||+ .+|+||||.| +..|+|+|||..++.|+|+.|..+..+- .|.-....+.||.+
T Consensus 332 ~~w~~~~a~r~kAe~llrg~~dGtFLIR~s-s~~g~yalSV~~~~~V~HClIy~tatG~-------GFa~pyn~y~tlk~ 403 (464)
T KOG4637|consen 332 KTWRVRDANRDKAEELLRGKPDGTFLIRES-SKGGCYALSVVHDGEVKHCLIYQTATGF-------GFAEPYNLYSTLKE 403 (464)
T ss_pred hHhHHhhhhHHHHHHHhcCCCCCeEEEeec-cCCCceEEEEEECCceeeeEEeeccccc-------cccchhHHHHHHHH
Confidence 379999999999999998 4999999996 6789999999999999999999885321 13333457899999
Q ss_pred HHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcCCC-CceecCcccCC
Q psy5180 109 LITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISSLS-GAKIKSPKNRY 166 (192)
Q Consensus 109 LI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~~~-~~~L~~Pv~r~ 166 (192)
||.||+..+|+..+..|.+.+.-+.|.-+.. .+..|+.... .+.+.-|+.|.
T Consensus 404 lV~hY~h~SLe~HnDal~ttLr~Pv~~~~~~------~~s~~l~n~~~qv~~a~~~s~k 456 (464)
T KOG4637|consen 404 LVLHYQHTSLEQHNDALTTTLRYPVFAQVTS------DTSKPLRNGPGQVFTALPISRK 456 (464)
T ss_pred HHHHHhhhhHHhhccccccccccceecccCC------ccchhhhcCcchhhhhhhhhhc
Confidence 9999999999888888887777776643221 1223443332 35555666653
No 15
>KOG0790|consensus
Probab=99.19 E-value=4.7e-11 Score=105.38 Aligned_cols=79 Identities=25% Similarity=0.571 Sum_probs=69.5
Q ss_pred CCcccccCCCHHHHHHhhhc---CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEE-eCCCCcCC
Q psy5180 30 SHAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQ-FEDDLFDT 105 (192)
Q Consensus 30 ~~~WyhG~isr~eAe~lL~~---~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~-~~~~~F~s 105 (192)
+..|||..++..+||.||+. +|+||.|.|++.+|+|+|+++.++.+.|++|.... ..|. .++.+|.+
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~---------~~~~l~~gekfat 73 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSG---------DFYDLYGGEKFAT 73 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecC---------ccccccCCccccc
Confidence 46899999999999999984 99999999999999999999999999999998752 3343 45889999
Q ss_pred HHHHHHHhHHhc
Q psy5180 106 VPDLITFYVVIQ 117 (192)
Q Consensus 106 L~eLI~~Y~~~~ 117 (192)
++|||+||..+.
T Consensus 74 ~~ELvqyyme~~ 85 (600)
T KOG0790|consen 74 LAELVQYYMEHH 85 (600)
T ss_pred hHHHHHHHHhhh
Confidence 999999998776
No 16
>KOG3601|consensus
Probab=99.17 E-value=3e-12 Score=103.05 Aligned_cols=86 Identities=26% Similarity=0.497 Sum_probs=76.9
Q ss_pred CccCCCCCcccccCCCHHHHHHhhh--cCCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCC
Q psy5180 24 DNRDLRSHAWYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDD 101 (192)
Q Consensus 24 ~~~~L~~~~WyhG~isr~eAe~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+...+..++||+|.++|..||++|. ++|+||+|.+++.+|.|.+|++....|.|+++.+.. .++|.+...
T Consensus 51 Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa--------~~k~~lw~s 122 (222)
T KOG3601|consen 51 NAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPA--------FGKYFLWSS 122 (222)
T ss_pred cccccccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccC--------ccccccchh
Confidence 4445567899999999999999997 499999999999999999999999999999998753 578888889
Q ss_pred CcCCHHHHHHHhHHhc
Q psy5180 102 LFDTVPDLITFYVVIQ 117 (192)
Q Consensus 102 ~F~sL~eLI~~Y~~~~ 117 (192)
+|.|+.+|++||+.+.
T Consensus 123 kfnslnplv~Y~rt~s 138 (222)
T KOG3601|consen 123 KFNSLNPLVSYHRTAS 138 (222)
T ss_pred hccCCCCCcccCcccc
Confidence 9999999999997765
No 17
>KOG3697|consensus
Probab=98.85 E-value=3.4e-09 Score=88.98 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCCCcccccCCCHHHHHHhhhcCCcEEEEecCCCCCc-------------------------------------------
Q psy5180 28 LRSHAWYHGAIPRSRAEEIIENEGDFLIRDCTSQPGN------------------------------------------- 64 (192)
Q Consensus 28 L~~~~WyhG~isr~eAe~lL~~~G~FLVR~S~~~~g~------------------------------------------- 64 (192)
....+||||.+++++++..|..+|+|++|.+...++.
T Consensus 198 p~k~pp~~g~l~~~~~q~~l~~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~~ 277 (345)
T KOG3697|consen 198 PSKMPPPGGFLDTRLKQRPLAPDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDETT 277 (345)
T ss_pred cccCCCCCCccchhhhhccCCcccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccccC
Confidence 3457999999999999999999999999977655544
Q ss_pred ----EEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCCCcCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHH
Q psy5180 65 ----YVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDL 140 (192)
Q Consensus 65 ----~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~L 140 (192)
|+|+-..++..+|..+. +....+..++..|+||..|
T Consensus 278 ~~gqyvltgl~~~~~khlllv----------------------------------------dpegvvrtkd~~fdsishl 317 (345)
T KOG3697|consen 278 TPGQYVLTGLQSGQPKHLLLV----------------------------------------DPEGVVRTKDRRFDSISHL 317 (345)
T ss_pred CCccEEEecccCCCcceEEEE----------------------------------------CCccceecccchhhHHHHH
Confidence 44444444444444432 2222234457899999999
Q ss_pred HHHHHhCCCCCcC-CCCceecCcccCC
Q psy5180 141 ITFYVGSGKPISS-LSGAKIKSPKNRY 166 (192)
Q Consensus 141 i~~y~~~~~pi~~-~~~~~L~~Pv~r~ 166 (192)
|+||+.+..||.. ++...|.+||.|.
T Consensus 318 i~yh~~~~lpiis~~sel~l~~pv~r~ 344 (345)
T KOG3697|consen 318 INYHMDNHLPIISAGSELCLQQPVERK 344 (345)
T ss_pred HHHhhhccCceecCcchhhhhCccccc
Confidence 9999999999965 4579999999985
No 18
>KOG1930|consensus
Probab=98.75 E-value=8.7e-09 Score=90.34 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=70.9
Q ss_pred CCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeC---------------CeEEEEEEEEeeecCCccc
Q psy5180 29 RSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSK---------------TQYLHFVINKVVIQPDTVY 91 (192)
Q Consensus 29 ~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~---------------~~v~H~~I~~~~~~~~~~~ 91 (192)
.+.-||...|+|++|-.||+. +|+||||+|.+.+|.|-|.++.. .-|+||.|.... +++.
T Consensus 210 TSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~sp---kGVk 286 (483)
T KOG1930|consen 210 TSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSP---KGVK 286 (483)
T ss_pred ccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCC---Ccee
Confidence 345799999999999999984 99999999999999999998872 238999998763 2210
Q ss_pred cceeEEeCCCCcCCHHHHHHHhHHhccccchhhhccc
Q psy5180 92 ERVQFQFEDDLFDTVPDLITFYVVIQPDTVYERVQFQ 128 (192)
Q Consensus 92 ~~~~~~~~~~~F~sL~eLI~~Y~~~~l~~~~~~l~~~ 128 (192)
-+---++..|.||..||--|...+|.+ .+.|.++
T Consensus 287 --LKGC~nEP~FGSLSALV~QHSIt~LAL-PckL~iP 320 (483)
T KOG1930|consen 287 --LKGCDNEPVFGSLSALVYQHSITALAL-PCKLVIP 320 (483)
T ss_pred --ccCCCCCCccchhHHHHhhccchhhhc-ceeEecc
Confidence 011123569999999999888888743 3444443
No 19
>KOG3751|consensus
Probab=98.42 E-value=1.4e-07 Score=84.92 Aligned_cols=86 Identities=31% Similarity=0.557 Sum_probs=70.9
Q ss_pred CCCCCcccccCCCHHHHHHhhhc----CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeC--C
Q psy5180 27 DLRSHAWYHGAIPRSRAEEIIEN----EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFE--D 100 (192)
Q Consensus 27 ~L~~~~WyhG~isr~eAe~lL~~----~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~--~ 100 (192)
....+.||||.|+|+++..++++ +|.||+|+|.+.|..|+++.....+|+||+|.....+ + .-++..+ .
T Consensus 515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~--~---~~~~t~~~g~ 589 (622)
T KOG3751|consen 515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDD--G---CTFFTLDDGP 589 (622)
T ss_pred hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCC--C---ceeeccCCCC
Confidence 34568999999999999998874 8999999999999999999999999999999986421 1 2233333 4
Q ss_pred CCcCCHHHHHHHhHHhc
Q psy5180 101 DLFDTVPDLITFYVVIQ 117 (192)
Q Consensus 101 ~~F~sL~eLI~~Y~~~~ 117 (192)
.+|.++..|+++|+.+.
T Consensus 590 t~~sd~~ql~~~~ql~k 606 (622)
T KOG3751|consen 590 TKFSDLIQLVEFYQLNK 606 (622)
T ss_pred ccccccccccchhhcCC
Confidence 58999999999998873
No 20
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=97.87 E-value=0.00012 Score=60.39 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeC-CeEEEEEEEEeeecCCccccceeEEeCCCCcCC
Q psy5180 29 RSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSK-TQYLHFVINKVVIQPDTVYERVQFQFEDDLFDT 105 (192)
Q Consensus 29 ~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~F~s 105 (192)
-.+|-|+ +++-.+|+++|.. .|+++||.|.......+++++.. |...|+.|...+... ...-+....+++..|.+
T Consensus 36 I~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n-~~slG~~L~i~~~~yeD 113 (220)
T PF14633_consen 36 IKHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKEN-EFSLGKTLKIGGEEYED 113 (220)
T ss_dssp HCSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSS-TTS-SSEEEETTEEESS
T ss_pred ccCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcC-ccccCcEEEECCeEECC
Confidence 3468888 9999999999984 79999999976566688999864 556799998764221 11223457788999999
Q ss_pred HHHHHHHhH
Q psy5180 106 VPDLITFYV 114 (192)
Q Consensus 106 L~eLI~~Y~ 114 (192)
|.|||..|-
T Consensus 114 LDEii~r~V 122 (220)
T PF14633_consen 114 LDEIIARHV 122 (220)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHHH
Confidence 999999883
No 21
>KOG4566|consensus
Probab=96.87 E-value=0.0018 Score=54.48 Aligned_cols=79 Identities=25% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEe------
Q psy5180 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQF------ 98 (192)
Q Consensus 27 ~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~------ 98 (192)
.+..-+||+|.+++.+|+..|.. .|+||||+|...+-.+.|+++....-+..+|...+ +.|..
T Consensus 48 ~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~---------~sfr~ds~~~~ 118 (258)
T KOG4566|consen 48 LLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQD---------SSFRLDSSHRH 118 (258)
T ss_pred ccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccc---------cceeccccccc
Confidence 34566899999999999998875 89999999988787899999998888888887653 22222
Q ss_pred CC--CCcCCHHHHHHHhH
Q psy5180 99 ED--DLFDTVPDLITFYV 114 (192)
Q Consensus 99 ~~--~~F~sL~eLI~~Y~ 114 (192)
.. ..|++...++.||.
T Consensus 119 ~~pl~~~e~~~~~~~~y~ 136 (258)
T KOG4566|consen 119 TPPLISFEDVEVLIHHYR 136 (258)
T ss_pred CCCcccChhHHHHHHhhh
Confidence 11 25666667777763
No 22
>KOG1856|consensus
Probab=96.11 E-value=0.011 Score=58.23 Aligned_cols=87 Identities=15% Similarity=0.335 Sum_probs=64.9
Q ss_pred cCCCCCcccccCCCHHHHHHhhh--cCCcEEEEecCCCCCcEEEEEeeCC-eEEEEEEEEeeecCCccccceeEEeCCCC
Q psy5180 26 RDLRSHAWYHGAIPRSRAEEIIE--NEGDFLIRDCTSQPGNYVLSCMSKT-QYLHFVINKVVIQPDTVYERVQFQFEDDL 102 (192)
Q Consensus 26 ~~L~~~~WyhG~isr~eAe~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~-~v~H~~I~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
...-.+|.|| +++-++|+.+|. +.|.++||.|.......+++++..+ ...|+.|...... ...+-++.+.+++..
T Consensus 1103 ~RvI~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKE-n~fslg~~l~i~~e~ 1180 (1299)
T KOG1856|consen 1103 SRVIAHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKE-NYFSLGKTLWIGGEE 1180 (1299)
T ss_pred hhhhcCcccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhcc-ccccccceEEECCcc
Confidence 4556789999 899999999997 4999999999765566788887654 4577888654211 112224456788999
Q ss_pred cCCHHHHHHHhH
Q psy5180 103 FDTVPDLITFYV 114 (192)
Q Consensus 103 F~sL~eLI~~Y~ 114 (192)
|..|.++|.-|-
T Consensus 1181 feDLDEiI~r~v 1192 (1299)
T KOG1856|consen 1181 FEDLDEIIARYV 1192 (1299)
T ss_pred cccHHHHHHHHH
Confidence 999999998873
No 23
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=95.80 E-value=0.0069 Score=49.98 Aligned_cols=95 Identities=15% Similarity=0.304 Sum_probs=57.9
Q ss_pred HHHHHhhhhhcC---CccCCCCCcccccCCCHHHHHHhhhc-------CCcEEEEecCCCCCcEEEEEeeCCeEEEEE--
Q psy5180 12 QLKKALEWELSL---DNRDLRSHAWYHGAIPRSRAEEIIEN-------EGDFLIRDCTSQPGNYVLSCMSKTQYLHFV-- 79 (192)
Q Consensus 12 ~~~~~~~~~~~~---~~~~L~~~~WyhG~isr~eAe~lL~~-------~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~-- 79 (192)
+|.+++...+.- ..+++..+..|.. -++++++++|.. --.|.+-.+...||.|.|+...+...+|..
T Consensus 113 DLDEii~r~V~pm~~~v~~~~~h~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~ 191 (220)
T PF14633_consen 113 DLDEIIARHVEPMARNVEEMMNHRKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWP 191 (220)
T ss_dssp SHHHHHHHCHHHHHHHHHHHHCSTTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEee
Confidence 344444444431 2345666777764 467788888862 235666667778999999998866555444
Q ss_pred EEEeeecCCccccceeEEeCCCCcCCHHHHHHHhHHh
Q psy5180 80 INKVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVVI 116 (192)
Q Consensus 80 I~~~~~~~~~~~~~~~~~~~~~~F~sL~eLI~~Y~~~ 116 (192)
|..+. . .|.+....|+++.+|+.+++.+
T Consensus 192 v~V~p--------~-Gf~~r~~~f~~~~~L~~~FK~~ 219 (220)
T PF14633_consen 192 VKVTP--------D-GFRFRKQVFPSLDRLINWFKKH 219 (220)
T ss_dssp EEE-S--------S-SEEETTEEESSHHHHHHHHHHH
T ss_pred EEEec--------C-cEEEecccCCCHHHHHHHHhhc
Confidence 55442 2 3667777777777777777654
No 24
>KOG1856|consensus
Probab=93.00 E-value=0.23 Score=49.45 Aligned_cols=83 Identities=17% Similarity=0.368 Sum_probs=60.1
Q ss_pred cCCCCCcccccCCCHHHHHHhhhc----CCcE---EEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEe
Q psy5180 26 RDLRSHAWYHGAIPRSRAEEIIEN----EGDF---LIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQF 98 (192)
Q Consensus 26 ~~L~~~~WyhG~isr~eAe~lL~~----~G~F---LVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~ 98 (192)
.++..+.+|. .=++++.|++|.. ++.+ ....|...||.|+|+.+.+.+++|=-|..+. ..|.+
T Consensus 1200 ~em~nhkyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p---------~g~~~ 1269 (1299)
T KOG1856|consen 1200 REMTNHKYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVP---------EGFRF 1269 (1299)
T ss_pred HHHHhhhHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcc---------cceEE
Confidence 4566677887 3469999999972 4444 3456777899999999999999998877663 23666
Q ss_pred CCCCcCCHHHHHHHhHHhcc
Q psy5180 99 EDDLFDTVPDLITFYVVIQP 118 (192)
Q Consensus 99 ~~~~F~sL~eLI~~Y~~~~l 118 (192)
.++.|+|+.+|..+++.+..
T Consensus 1270 rg~~f~tld~L~~~FK~h~~ 1289 (1299)
T KOG1856|consen 1270 RGQNFGTLDELCRWFKRHYK 1289 (1299)
T ss_pred ecccchhHHHHHHHHHHHhc
Confidence 66777777777776666554
No 25
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=91.79 E-value=0.22 Score=34.42 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHhCCCCCcCCCCceecCcc
Q psy5180 131 DDLFDTVPDLITFYVGSGKPISSLSGAKIKSPK 163 (192)
Q Consensus 131 ~~~f~sv~~Li~~y~~~~~pi~~~~~~~L~~Pv 163 (192)
...|+||.+||+||..+.. ....+..|+.|+
T Consensus 64 ~~~f~sl~eLv~~y~~~~~--~~~~~~~L~~p~ 94 (94)
T cd00173 64 GRSFPSLPELIEHYQKNPL--SDGLGVKLRYPV 94 (94)
T ss_pred CCccCCHHHHHHHHhhCcc--CCCcccEeCCcC
Confidence 6799999999999998554 334467888775
No 26
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=77.89 E-value=9.7 Score=26.38 Aligned_cols=43 Identities=12% Similarity=0.377 Sum_probs=33.8
Q ss_pred CcccccCCCHHHHHHhhh----cCCcEEEEecCCCCCcEEEEEeeCC
Q psy5180 31 HAWYHGAIPRSRAEEIIE----NEGDFLIRDCTSQPGNYVLSCMSKT 73 (192)
Q Consensus 31 ~~WyhG~isr~eAe~lL~----~~G~FLVR~S~~~~g~~~LSv~~~~ 73 (192)
+|=|...|+=.|+...|+ ++|+|+.|-|-++-|.+++-....+
T Consensus 2 HpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~d 48 (86)
T PF02762_consen 2 HPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQD 48 (86)
T ss_dssp -TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEETT
T ss_pred CCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcCC
Confidence 355777899999999997 3999999999999999999776543
No 27
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=67.71 E-value=5.1 Score=27.02 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHhC
Q psy5180 131 DDLFDTVPDLITFYVGS 147 (192)
Q Consensus 131 ~~~f~sv~~Li~~y~~~ 147 (192)
...|++|.+||+||..+
T Consensus 65 ~~~F~sl~eLI~~y~~~ 81 (84)
T smart00252 65 GRKFPSLVELVEHYQKN 81 (84)
T ss_pred CCccCCHHHHHHHHhhC
Confidence 47999999999999974
No 28
>KOG4226|consensus
Probab=61.49 E-value=3.8 Score=35.08 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=30.3
Q ss_pred HhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcCC---CCceecCccc
Q psy5180 112 FYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISSL---SGAKIKSPKN 164 (192)
Q Consensus 112 ~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~~---~~~~L~~Pv~ 164 (192)
|++.+-.+++++. ..+.|.++.+||+||++ .||... ....|.+++.
T Consensus 330 HFkVq~~d~~ycI-----GqRkF~tmd~Lv~HY~k--aPIfts~qgEKLyLvr~Lp 378 (379)
T KOG4226|consen 330 HFKVQLVDNVYCI-----GQRKFHTMDELVEHYKK--APIFTSEQGEKLYLVRALP 378 (379)
T ss_pred ceEEEEecceEEe-----ccceeccHHHHHHhhhc--CCceecCCCceEEEeccCC
Confidence 4444444444443 46799999999999998 777432 3466666654
No 29
>KOG4792|consensus
Probab=59.46 E-value=4.2 Score=33.96 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=33.8
Q ss_pred HHHhHHhc-----cccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcCCCCceecCcccCCCC
Q psy5180 110 ITFYVVIQ-----PDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISSLSGAKIKSPKNRYSC 168 (192)
Q Consensus 110 I~~Y~~~~-----l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~~~~~~L~~Pv~r~~~ 168 (192)
|.||-.+. -++..++++ ..+..|++++.|++||+- .-+. -..|+.|..|+.-
T Consensus 57 VshYiIn~~~p~~~~~~~~~~r--IgdQ~Fd~lPaLL~fyki--hyLd---tttLi~p~~r~~~ 113 (293)
T KOG4792|consen 57 VSHYIINSSPPSPAQPPPSRLR--IGDQEFDSLPALLEFYKI--HYLD---TTTLIEPAKRSRQ 113 (293)
T ss_pred eeeeeecCCCCCccCCCcceee--eccccccchHHHHhheeE--eeec---ccccccccccccc
Confidence 56665444 222233444 467899999999999984 2222 2568888888776
No 30
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=55.41 E-value=17 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=21.5
Q ss_pred CCcEEEEecCCCCCcEEEEEeeCC
Q psy5180 50 EGDFLIRDCTSQPGNYVLSCMSKT 73 (192)
Q Consensus 50 ~G~FLVR~S~~~~g~~~LSv~~~~ 73 (192)
+|+|.|+-.....|.|.|+|++++
T Consensus 55 dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 55 DGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCEEEEEEEeCCCEeEEEEEEECC
Confidence 899999988888899999999886
No 31
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=52.05 E-value=16 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=19.7
Q ss_pred CCcEEEEecCCCCCcEEEEEeeCC
Q psy5180 50 EGDFLIRDCTSQPGNYVLSCMSKT 73 (192)
Q Consensus 50 ~G~FLVR~S~~~~g~~~LSv~~~~ 73 (192)
+|.|.|+-....+|.|.|+|++++
T Consensus 69 ~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 69 DGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp SSEEEEEEEESSSEEEEEEEEESS
T ss_pred CCEEEEEEEeCccEeEEEEEEECC
Confidence 788888887777888888888876
No 32
>KOG3667|consensus
Probab=46.85 E-value=33 Score=32.91 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred CCCCCcccccCCCHHHHHHhhhc--CCcEEEEecCCCCCcEEEEEeeCC-eEEEEEEE
Q psy5180 27 DLRSHAWYHGAIPRSRAEEIIEN--EGDFLIRDCTSQPGNYVLSCMSKT-QYLHFVIN 81 (192)
Q Consensus 27 ~L~~~~WyhG~isr~eAe~lL~~--~G~FLVR~S~~~~g~~~LSv~~~~-~v~H~~I~ 81 (192)
.|-......|.++++.+.++|.. +|+||+|.|.+..|..++....+. ...|+-|.
T Consensus 559 ~Lw~dg~Imgfinkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 559 PLWNDGVIMGFINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred HHhhcceeeeecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence 34445666889999999999974 999999999887776655443322 22466665
No 33
>KOG3508|consensus
Probab=43.51 E-value=12 Score=36.93 Aligned_cols=53 Identities=26% Similarity=0.463 Sum_probs=43.3
Q ss_pred CcccccCCCHHHHHHhhhc---CCcEEEEecCCCCCcEEEEEeeC-CeEEEEEEEEe
Q psy5180 31 HAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSK-TQYLHFVINKV 83 (192)
Q Consensus 31 ~~WyhG~isr~eAe~lL~~---~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~ 83 (192)
-.||||++.|.-++..+++ .|.++||++...++.+.++.... +.+.|+++...
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s~ 137 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTISK 137 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhhh
Confidence 3799999999999999874 78999999999999988877432 34888888654
No 34
>KOG0197|consensus
Probab=36.96 E-value=10 Score=34.76 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=38.2
Q ss_pred CCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCCCCcCCCCceecCcccC
Q psy5180 104 DTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGKPISSLSGAKIKSPKNR 165 (192)
Q Consensus 104 ~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~pi~~~~~~~L~~Pv~r 165 (192)
..+.+.|+||+...++.-.-.. ..-+...|+++.+|++||..+...+. .+|..|+..
T Consensus 129 ~~~~~~v~hyri~~~~~~~~~~-~~~~~~~F~~l~~lv~~~~~~~~gl~----~~l~~p~~~ 185 (468)
T KOG0197|consen 129 GGLGAKVKHYRIRQLDGGGLYP-YIDERELFSSLQQLVNYYSKNADGLC----TRLRDPCSK 185 (468)
T ss_pred cCCccceeeeeeeEcCCCCeec-CCCHHHhhhhHHHHHhhhhccCcchh----hcccCchhc
Confidence 3456789999888775442110 11235689999999999998666654 456666654
No 35
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=36.86 E-value=1.1e+02 Score=20.79 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=9.7
Q ss_pred CCHHHHHHHhHHhc
Q psy5180 104 DTVPDLITFYVVIQ 117 (192)
Q Consensus 104 ~sL~eLI~~Y~~~~ 117 (192)
.+|.+.|++|-...
T Consensus 36 GpL~~VVe~Yik~K 49 (72)
T PF07935_consen 36 GPLDDVVETYIKLK 49 (72)
T ss_pred ccHHHHHHHHHhcc
Confidence 36788888876553
No 36
>KOG3554|consensus
Probab=32.92 E-value=57 Score=30.17 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=24.5
Q ss_pred ceecCcccCCCCCcccccChhhhc---cccC--ccccccCC
Q psy5180 157 AKIKSPKNRYSCDILVVSNAKQSK---SLSN--IRMCINCS 192 (192)
Q Consensus 157 ~~L~~Pv~r~~~~~~~~~~~~~~~---~~~~--~~~~~~~~ 192 (192)
.+-.-+.+++.+..+.+.|.+-+- .|-| -|.|-||.
T Consensus 353 qvYIP~ynKPnpnqI~~~n~k~g~~gtt~~~~~g~~CEsC~ 393 (693)
T KOG3554|consen 353 QVYIPTYNKPNPNQISPYNTKPGMNGTTFQNQDGRACESCY 393 (693)
T ss_pred eeeccCCCCCCcceecccCCCcCcccccccCCCCCcccccc
Confidence 344557788888888888887332 3443 68999994
No 37
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.51 E-value=59 Score=21.73 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.7
Q ss_pred CCCHHHHHHhhhcCCcEEEEecC
Q psy5180 37 AIPRSRAEEIIENEGDFLIRDCT 59 (192)
Q Consensus 37 ~isr~eAe~lL~~~G~FLVR~S~ 59 (192)
.++-++++++|..+|-|+||..-
T Consensus 6 ~~~~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 6 RMKAKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred cCCHHHHHHHHHhCCcEEEEeec
Confidence 56778899999999999999863
No 38
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=30.65 E-value=48 Score=23.63 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=8.7
Q ss_pred CCHHHHHHhhh
Q psy5180 38 IPRSRAEEIIE 48 (192)
Q Consensus 38 isr~eAe~lL~ 48 (192)
=+|++|++|-.
T Consensus 47 ~skE~AdKla~ 57 (99)
T PF15517_consen 47 ESKEEADKLAE 57 (99)
T ss_dssp SSHHHHHHHSS
T ss_pred CCHHHHHHhhh
Confidence 47899998875
No 39
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=1.4e+02 Score=21.21 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=14.8
Q ss_pred CCcEEEEecC-CCCCcEEEEEe
Q psy5180 50 EGDFLIRDCT-SQPGNYVLSCM 70 (192)
Q Consensus 50 ~G~FLVR~S~-~~~g~~~LSv~ 70 (192)
.++|||+... +..|.|-|+-+
T Consensus 28 hkdflI~atP~~eggQyr~aG~ 49 (96)
T COG5453 28 HKDFLIYATPISEGGQYRLAGR 49 (96)
T ss_pred ccCeEEEeeecccCCeEEEeeE
Confidence 6889999775 34567766554
No 40
>KOG1785|consensus
Probab=25.17 E-value=1.1e+02 Score=27.78 Aligned_cols=43 Identities=12% Similarity=0.362 Sum_probs=35.7
Q ss_pred CcccccCCCHHHHHHhhh----cCCcEEEEecCCCCCcEEEEEeeCC
Q psy5180 31 HAWYHGAIPRSRAEEIIE----NEGDFLIRDCTSQPGNYVLSCMSKT 73 (192)
Q Consensus 31 ~~WyhG~isr~eAe~lL~----~~G~FLVR~S~~~~g~~~LSv~~~~ 73 (192)
++=|...++=.|+.+.|+ +.|+|+.|-|-++.|.++|-....+
T Consensus 256 HPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~d 302 (563)
T KOG1785|consen 256 HPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTAD 302 (563)
T ss_pred CCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCC
Confidence 455677889999999886 4999999999999999999876643
No 41
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=23.97 E-value=54 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=26.6
Q ss_pred CcCCHHHHHHHhHHhccccchhhhcccccCCCCCCHHHHHHHHHhCCC
Q psy5180 102 LFDTVPDLITFYVVIQPDTVYERVQFQFEDDLFDTVPDLITFYVGSGK 149 (192)
Q Consensus 102 ~F~sL~eLI~~Y~~~~l~~~~~~l~~~~~~~~f~sv~~Li~~y~~~~~ 149 (192)
+-.++++||++|...+. +|+ +....=..+..+|+-|.....
T Consensus 8 K~rni~eLi~fY~ky~~-----~~~--L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 8 KIRNIQELIAFYEKYSP-----RLP--LTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred HHhhHHHHHHHHHHcCc-----cCC--CCHHHHHHHHHHHHHHHHHhh
Confidence 45689999999987763 211 122333557788888887543
No 42
>KOG3508|consensus
Probab=23.23 E-value=4.3 Score=40.02 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCCCcccccCCCHHHHHHhhhc---CCcEEEEecCCCCCcEEEEEeeCCeEEEEEEEEeeecCCccccceeEEeCCCCc
Q psy5180 27 DLRSHAWYHGAIPRSRAEEIIEN---EGDFLIRDCTSQPGNYVLSCMSKTQYLHFVINKVVIQPDTVYERVQFQFEDDLF 103 (192)
Q Consensus 27 ~L~~~~WyhG~isr~eAe~lL~~---~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~F 103 (192)
......|+|++|...+|..+|.. .+.|++|.+...++.|.+-......+.|+.|.... ...|..+...+
T Consensus 226 ~~~~ar~q~i~i~~~e~y~~~~e~~~~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s~~~--------ak~fl~Dl~~~ 297 (932)
T KOG3508|consen 226 PRIKARWQSINILPMEAYDELAETGTYNYFLLCPVLNPPLDVSLKEELANALVRVLISTGR--------AKQFLMDLRMK 297 (932)
T ss_pred ccccccccccccCchHHHHHHHHHhccceeeeecccCCCcchhHHHHHHHHHHHHHHhcch--------HHHHhhcchhH
Confidence 34456999999999999999984 66899999877777654433334456666665431 23454444444
Q ss_pred CCHHH-HHHHhH
Q psy5180 104 DTVPD-LITFYV 114 (192)
Q Consensus 104 ~sL~e-LI~~Y~ 114 (192)
..+-. -++||.
T Consensus 298 e~~r~~~idhli 309 (932)
T KOG3508|consen 298 EVLRLGDIDHLI 309 (932)
T ss_pred hhhhccchhhhh
Confidence 44444 355553
No 43
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=21.97 E-value=90 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.582 Sum_probs=25.5
Q ss_pred hhhcCCcEEEEecCCCCCcEEEEEeeCCe-EEEEEEEEe
Q psy5180 46 IIENEGDFLIRDCTSQPGNYVLSCMSKTQ-YLHFVINKV 83 (192)
Q Consensus 46 lL~~~G~FLVR~S~~~~g~~~LSv~~~~~-v~H~~I~~~ 83 (192)
.++.+|+|.+++-. +|.|.|.|.+.+- ...++|...
T Consensus 25 ~v~~dG~F~f~~Vp--~GsY~L~V~s~~~~F~~~RVdV~ 61 (123)
T PF09430_consen 25 FVRSDGSFVFHNVP--PGSYLLEVHSPDYVFPPYRVDVS 61 (123)
T ss_pred EecCCCEEEeCCCC--CceEEEEEECCCccccCEEEEEe
Confidence 44569999999864 6999999977543 344566544
Done!