BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5184
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 159 bits (402), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 94/116 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNYSER+G GA V+LAA LEYL AEILELAGN
Sbjct: 13 KARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGN 72
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYY 138
AA DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++
Sbjct: 73 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 128
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 73 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 124
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 94/116 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNYSER+G GA V+LAA LEYL AEILELAGN
Sbjct: 29 KARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGN 88
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYY 138
AA DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++
Sbjct: 89 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 144
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 89 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 140
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 94/116 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNYSER+G GA V+LAA LEYL AEILELAGN
Sbjct: 10 KARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGN 69
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYY 138
AA DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++
Sbjct: 70 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 125
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 70 AARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 94/115 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A ++RS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEY 137
AA DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT+ +
Sbjct: 69 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 123
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTN 199
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT+
Sbjct: 69 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 121
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 94/115 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A ++RS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 10 KARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 69
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEY 137
AA DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT+ +
Sbjct: 70 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTN 199
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL KKT+
Sbjct: 70 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 122
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 92/112 (82%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 69 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++ S+
Sbjct: 70 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSTKSK 129
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 92/112 (82%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 69 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++ S+
Sbjct: 70 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK 129
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 92/112 (82%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 69 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++ S+
Sbjct: 70 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK 129
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKK 89
+RS +A + FPV RI R L++GNY+ER+G GA V+LAA +EYL AE+LELAGNAA DNKK
Sbjct: 15 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 74
Query: 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
+RI PR+L LAI+NDEEL KLL GVTIAQGGVLP+I+ VLL KKT
Sbjct: 75 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 119
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201
A DNKK+RI PR+L LAI+NDEEL KLL GVTIAQGGVLP+I+ VLL KKT K
Sbjct: 68 AARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 122
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKK 89
+RS +A + FPV RI R L++GNY+ER+G GA V+LAA +EYL AE+LELAGNAA DNKK
Sbjct: 15 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 74
Query: 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
+RI PR+L LAI+NDEEL KLL GVTIAQGGVLP+I+ VLL KKT
Sbjct: 75 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 119
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK+RI PR+L LAI+NDEEL KLL GVTIAQGGVLP+I+ VLL KKT
Sbjct: 68 AARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 119
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KK
Sbjct: 69 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 197
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KK
Sbjct: 70 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 91/111 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 6 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 65
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KK
Sbjct: 66 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 116
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 197
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KK
Sbjct: 67 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 116
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%)
Query: 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
+TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGNAA DNK
Sbjct: 2 KTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 61
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
K+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 62 KTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 107
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 57 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 107
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT
Sbjct: 69 WERDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 150 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL KKT ++ S+
Sbjct: 72 DNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSTKSK 129
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 89/108 (82%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K+ A +TRS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGN
Sbjct: 9 KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGN 68
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLL 130
AA DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL
Sbjct: 69 AARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLL 116
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLL 194
A DNKK+RI PR+L LA++NDEEL KLL VTIAQGGVLP+I+ VLL
Sbjct: 70 ARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLL 116
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 86/106 (81%)
Query: 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
++RSAKA + FPV R+ R L+RGNY++RIG GA V+L A LEYL AEILELAGNAA DNK
Sbjct: 16 QSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNK 75
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
K+RI PR+L LAI+ND+EL KLL VTIAQGGVLP+I LL KK+
Sbjct: 76 KTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 121
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK+RI PR+L LAI+ND+EL KLL VTIAQGGVLP+I LL KK+ K T SQ
Sbjct: 71 ARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS-AKATKASQ 129
Query: 208 E 208
E
Sbjct: 130 E 130
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 88/111 (79%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K + + +RSAKA ++FPV R+ RY+K+G+ RIG+GA V++AA LEYL AEILELA N
Sbjct: 7 KKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVN 66
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
AA DNKK R+TPR+++LA+ NDEEL +LL GVTIA GGVLP+I P LL KK
Sbjct: 67 AARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 43/56 (76%)
Query: 142 EYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 197
E + A DNKK R+TPR+++LA+ NDEEL +LL GVTIA GGVLP+I P LL KK
Sbjct: 62 ELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 80/95 (84%)
Query: 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
++RS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGNAA DNK
Sbjct: 1 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 60
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLP 123
K+RI PR+L LAI+NDEEL KLL VTIAQGGVLP
Sbjct: 61 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLP 95
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 34/41 (82%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLP 187
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP
Sbjct: 55 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLP 95
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 91
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 76/91 (83%)
Query: 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
++RS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGNAA DNK
Sbjct: 1 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 60
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQG 119
K+RI PR+L LAI+NDEEL KLL VTIAQG
Sbjct: 61 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 91
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 30/37 (81%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQG 183
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQG
Sbjct: 55 AARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 91
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 87/140 (62%), Gaps = 13/140 (9%)
Query: 1 MANGKEKISKTASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLK-RGNYSERIGI 59
MA GK GKD G K K+ A +RS +A + FPV RI R+LK R R+G
Sbjct: 1 MAGGKA--------GKDSG-KAKTKAV--SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGA 49
Query: 60 GASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQG 119
A+V+ AA LEYL AE+LELAGNA+ D K RITPR+L LAI+ DEEL L+ TIA G
Sbjct: 50 TAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
Query: 120 GVLPHIEPVLLTKKTNEYYI 139
GV+PHI L+ KK + +
Sbjct: 109 GVIPHIHKSLIGKKGQQKTV 128
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 150 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKN 202
D K RITPR+L LAI+ DEEL L+ TIA GGV+PHI L+ KK K
Sbjct: 76 DLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKT 127
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Query: 34 KANIVFPVSRIQRYLKR-GNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRI 92
+A + FPV RI+RYLKR R+G A+++L A LEYL AE+LELAGNAA D K RI
Sbjct: 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 160
Query: 93 TPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHI 125
TPR+L LAI+ D+EL L+ TIA GGVLPHI
Sbjct: 161 TPRHLQLAIRGDDELDSLIRA-TIASGGVLPHI 192
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHI 189
A D K RITPR+L LAI+ D+EL L+ TIA GGVLPHI
Sbjct: 152 AKDLKVKRITPRHLQLAIRGDDELDSLIRA-TIASGGVLPHI 192
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 2 ANGKEKISKTASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGA 61
++ +E++ K+ D + + +A R + + PV +I LK +I
Sbjct: 68 SDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQV 126
Query: 62 SVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEEL 107
SV++ A LEY+ A+IL+LAGN + + IT + + +A D+ L
Sbjct: 127 SVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAXCADKVL 172
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 5 KEKISKTASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVF 64
+E++ K+ D + + +A R + + PV +I LK +I SV+
Sbjct: 71 EERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKE-VLGYKIDHQVSVY 129
Query: 65 LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111
+ A LEY+ A+IL+L GN + + IT + + +A+ D+ L +
Sbjct: 130 IVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 176
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 106 ELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTAS 149
EL +L + I GG P E + L KK N I +D FTAS
Sbjct: 135 ELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTAS 178
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 106 ELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTAS 149
EL +L + I GG P E + L KK N I +D FTAS
Sbjct: 132 ELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTAS 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,784,088
Number of Sequences: 62578
Number of extensions: 218062
Number of successful extensions: 391
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 48
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)